Wall clock time and date at job start Tue Mar 31 2020 21:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.52999 * 109.47232 * 240.00126 * 2 1 3 5 5 O 1.45198 * 109.47193 * 120.00065 * 2 1 3 6 6 C 1.34635 * 117.00226 * 59.99575 * 5 2 1 7 7 O 1.21516 * 119.99632 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00164 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00023 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.46526 * 324.99651 * 9 8 6 11 11 C 1.50698 * 109.47338 * 84.99795 * 9 8 6 12 12 H 1.07999 * 119.99664 * 240.00263 * 11 9 8 13 13 C 1.37874 * 120.00197 * 59.99854 * 11 9 8 14 14 N 1.31515 * 119.99675 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00246 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46897 * 60.00190 * 15 13 11 17 17 H 1.48497 * 109.47320 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46961 * 300.00578 * 15 13 11 19 19 C 1.50698 * 109.46781 * 205.00074 * 9 8 6 20 20 O 1.21275 * 120.00468 * 359.97438 * 19 9 8 21 21 N 1.34786 * 119.99553 * 179.97438 * 19 9 8 22 22 C 1.46497 * 119.99721 * 179.97438 * 21 19 9 23 23 C 1.52999 * 109.47250 * 180.02562 * 22 21 19 24 24 C 1.50698 * 109.47391 * 179.97438 * 23 22 21 25 25 C 1.39870 * 125.89873 * 124.99918 * 24 23 22 26 26 C 1.35318 * 107.92236 * 179.76106 * 25 24 23 27 27 N 1.34948 * 107.74290 * 0.42279 * 26 25 24 28 28 H 0.97001 * 126.03958 * 179.84649 * 27 26 25 29 29 N 1.30835 * 125.89830 * 305.02715 * 24 23 22 30 30 H 1.08998 * 109.47278 * 300.00052 * 1 2 3 31 31 H 1.09004 * 109.47043 * 60.00159 * 1 2 3 32 32 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47244 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47233 * 299.99853 * 3 2 1 35 35 H 1.08998 * 109.47027 * 59.99794 * 3 2 1 36 36 H 1.08999 * 109.47019 * 299.99978 * 4 2 1 37 37 H 1.08996 * 109.47235 * 60.00151 * 4 2 1 38 38 H 1.09002 * 109.46815 * 180.02562 * 4 2 1 39 39 H 0.97002 * 120.00009 * 359.97438 * 8 6 5 40 40 H 0.97001 * 119.99819 * 179.97438 * 14 13 11 41 41 H 0.96992 * 120.00332 * 359.97438 * 21 19 9 42 42 H 1.09002 * 109.47287 * 59.99732 * 22 21 19 43 43 H 1.09004 * 109.47331 * 300.00199 * 22 21 19 44 44 H 1.09002 * 109.47348 * 59.99582 * 23 22 21 45 45 H 1.09004 * 109.46963 * 300.00237 * 23 22 21 46 46 H 1.08008 * 126.03860 * 0.02562 * 25 24 23 47 47 H 1.07999 * 126.12849 * 180.26834 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0671 -2.6654 2.4172 9 6 1.6739 -4.0668 2.5832 10 1 0.6650 -4.2094 2.1958 11 6 2.6320 -4.9504 1.8268 12 1 2.2674 -5.5907 1.0371 13 6 3.9741 -4.9414 2.1426 14 7 4.4179 -4.1620 3.1045 15 14 5.1616 -6.0373 1.2055 16 1 5.1300 -5.6823 -0.2361 17 1 6.5359 -5.8433 1.7335 18 1 4.7627 -7.4577 1.3743 19 6 1.7059 -4.4276 4.0460 20 8 2.0261 -3.5962 4.8688 21 7 1.3786 -5.6744 4.4399 22 6 1.4103 -6.0252 5.8619 23 6 0.9995 -7.4888 6.0353 24 6 1.0327 -7.8499 7.4980 25 6 -0.0267 -8.3918 8.2332 26 6 0.4005 -8.5779 9.5037 27 7 1.6816 -8.1596 9.5723 28 1 2.2445 -8.1719 10.3622 29 7 2.0572 -7.7103 8.2996 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 2.6268 -2.2365 3.0834 40 1 5.3620 -4.1560 3.3270 41 1 1.1222 -6.3392 3.7819 42 1 0.7179 -5.3858 6.4094 43 1 2.4194 -5.8831 6.2488 44 1 1.6922 -8.1280 5.4878 45 1 -0.0095 -7.6313 5.6483 46 1 -1.0104 -8.6248 7.8530 47 1 -0.1807 -8.9856 10.3176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180782286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:16 Heat of formation + Delta-G solvation = -78.571365 kcal Electronic energy + Delta-G solvation = -29691.913540 eV Core-core repulsion = 25489.315306 eV Total energy + Delta-G solvation = -4202.598234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03442 -41.50333 -40.33826 -38.03339 -36.42873 -35.71626 -34.92646 -33.74328 -33.53854 -30.83019 -30.61246 -29.13886 -28.25759 -28.20523 -25.93752 -24.53814 -22.88710 -22.11302 -21.44064 -20.85275 -20.41056 -19.20976 -18.96204 -18.62492 -17.57364 -16.99161 -16.95285 -16.77555 -16.63996 -16.22009 -15.66121 -15.39992 -15.20655 -15.07946 -14.95948 -14.59857 -14.35104 -14.30954 -14.08405 -13.73984 -13.30960 -13.22415 -13.10498 -12.91745 -12.82824 -12.76775 -12.74193 -12.72506 -12.40448 -12.38555 -12.18295 -12.11144 -11.81235 -11.47652 -11.20156 -11.01223 -10.75379 -10.42014 -10.30314 -9.78719 -9.60769 -9.56519 -8.20251 -6.41402 1.02324 1.38747 1.42570 1.49881 1.54202 1.85108 2.08456 2.14694 2.17935 2.40281 2.72419 3.10208 3.74113 3.82075 3.89283 3.91773 3.96700 4.06599 4.18087 4.31357 4.48665 4.49998 4.61233 4.69258 4.70433 4.77053 4.82996 4.87978 4.88780 4.94410 4.96219 5.01095 5.12543 5.15807 5.20782 5.40257 5.44993 5.61895 5.68451 5.71523 5.81206 5.84201 5.99279 6.53998 6.60545 6.77931 6.90724 6.99059 7.33683 7.69948 7.80393 8.80470 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002763 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.850726 B =10130.722520 C =11352.534583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 C -0.132 4.132 4 C -0.176 4.176 5 O -0.385 6.385 6 C 0.644 3.356 7 O -0.602 6.602 8 N -0.669 5.669 9 C 0.264 3.736 10 H 0.070 0.930 11 C -0.544 4.544 12 H 0.071 0.929 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.258 1.258 19 C 0.541 3.459 20 O -0.589 6.589 21 N -0.716 5.716 22 C 0.144 3.856 23 C -0.040 4.040 24 C 0.066 3.934 25 C -0.285 4.285 26 C 0.072 3.928 27 N -0.477 5.477 28 H 0.449 0.551 29 N -0.342 5.342 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.398 0.602 40 H 0.264 0.736 41 H 0.412 0.588 42 H 0.050 0.950 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.170 0.830 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -3.705 5.567 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.233 4.233 5 O -0.301 6.301 6 C 0.397 3.603 7 O -0.495 6.495 8 N -0.325 5.325 9 C 0.159 3.841 10 H 0.088 0.912 11 C -0.583 4.583 12 H 0.090 0.910 13 C -0.165 4.165 14 N -0.517 5.517 15 Si 0.780 3.220 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.183 1.183 19 C 0.329 3.671 20 O -0.469 6.469 21 N -0.369 5.369 22 C 0.019 3.981 23 C -0.079 4.079 24 C -0.101 4.101 25 C -0.314 4.314 26 C -0.076 4.076 27 N -0.186 5.186 28 H 0.295 0.705 29 N -0.167 5.167 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.232 0.768 40 H 0.073 0.927 41 H 0.248 0.752 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.188 0.812 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.093 -2.899 5.950 10.455 hybrid contribution 0.815 -0.834 0.055 1.167 sum -7.279 -3.733 6.005 10.148 Atomic orbital electron populations 1.22424 0.93688 1.03607 1.03384 1.22423 0.95009 0.92745 0.81760 1.21857 1.01959 0.90725 1.04334 1.22429 1.00893 1.02327 0.97655 1.86311 1.72367 1.23924 1.47472 1.18102 0.79229 0.80293 0.82672 1.90747 1.43804 1.70975 1.43925 1.45117 1.52642 1.12483 1.22275 1.18320 0.96984 0.78865 0.89899 0.91217 1.21303 0.92441 1.24635 1.19907 0.91044 1.25727 0.99912 0.95977 0.94878 1.70063 1.15373 1.37543 1.28711 0.85670 0.77646 0.80095 0.78635 1.20372 1.21636 1.18262 1.20966 0.73354 0.81886 0.90921 1.90495 1.49351 1.51079 1.55995 1.45487 1.70561 1.12566 1.08279 1.20945 0.99716 0.95705 0.81708 1.20162 1.05005 0.93768 0.88967 1.22338 0.92404 0.98932 0.96395 1.21828 1.01967 1.13746 0.93907 1.23329 0.86026 0.98137 1.00073 1.46449 1.11961 1.50297 1.09888 0.70477 1.77334 1.24562 1.23829 0.90993 0.92272 0.88517 0.92212 0.92023 0.87258 0.91385 0.92368 0.88434 0.93222 0.76754 0.92732 0.75232 0.93115 0.95077 0.89388 0.86260 0.81248 0.76042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 8.37 71.98 0.60 -4.61 16 2 C 0.12 3.85 1.13 -10.80 -0.01 3.83 16 3 C -0.13 -3.16 8.85 71.98 0.64 -2.52 16 4 C -0.18 -5.73 8.37 71.98 0.60 -5.13 16 5 O -0.39 -16.63 9.94 -55.44 -0.55 -17.18 16 6 C 0.64 31.43 8.01 129.79 1.04 32.47 16 7 O -0.60 -30.08 11.54 19.79 0.23 -29.85 16 8 N -0.67 -34.51 4.36 -577.35 -2.52 -37.03 16 9 C 0.26 13.25 2.57 43.50 0.11 13.36 16 10 H 0.07 3.41 7.58 -2.38 -0.02 3.39 16 11 C -0.54 -28.26 8.66 25.60 0.22 -28.04 16 12 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 13 C 0.04 2.13 5.23 84.65 0.44 2.58 16 14 N -0.88 -49.56 11.58 21.45 0.25 -49.31 16 15 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 19 C 0.54 26.43 6.00 87.65 0.53 26.96 16 20 O -0.59 -32.62 15.79 -3.01 -0.05 -32.66 16 21 N -0.72 -28.18 5.46 -463.06 -2.53 -30.71 16 22 C 0.14 5.14 5.63 86.38 0.49 5.63 16 23 C -0.04 -1.03 5.91 29.85 0.18 -0.86 16 24 C 0.07 1.74 6.49 43.10 0.28 2.02 16 25 C -0.29 -5.48 10.72 21.99 0.24 -5.24 16 26 C 0.07 1.05 11.99 83.54 1.00 2.05 16 27 N -0.48 -9.28 7.36 -57.59 -0.42 -9.71 16 28 H 0.45 5.77 8.96 -213.33 -1.91 3.86 16 29 N -0.34 -10.16 12.67 -47.39 -0.60 -10.76 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.06 2.19 5.88 -2.39 -0.01 2.17 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 2.32 5.88 -2.39 -0.01 2.31 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.40 21.73 7.58 -92.71 -0.70 21.03 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.41 13.96 8.36 -92.71 -0.78 13.18 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.03 1.33 8.14 -2.38 -0.02 1.32 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.12 2.32 8.12 -2.38 -0.02 2.30 16 46 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 47 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -77.27 393.51 -0.18 -77.44 By element: Atomic # 1 Polarization: 54.99 SS G_CDS: -2.37 Total: 52.62 kcal Atomic # 6 Polarization: 36.15 SS G_CDS: 6.35 Total: 42.51 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -5.82 Total: -137.52 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -0.37 Total: -79.70 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -77.27 -0.18 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds