Wall clock time and date at job start Tue Mar 31 2020 21:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46868 * 2 1 4 4 C 1.53001 * 109.47498 * 240.00007 * 2 1 3 5 5 O 1.45206 * 109.47378 * 119.99686 * 2 1 3 6 6 C 1.34636 * 116.99410 * 60.00343 * 5 2 1 7 7 O 1.21508 * 120.00648 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99660 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00015 * 0.02562 * 8 6 5 10 10 C 1.50708 * 109.47213 * 269.99900 * 9 8 6 11 11 H 1.08008 * 119.99599 * 359.97438 * 10 9 8 12 12 C 1.37867 * 120.00354 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00187 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00351 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47172 * 89.99947 * 14 12 10 16 16 H 1.48494 * 109.47335 * 210.00132 * 14 12 10 17 17 H 1.48498 * 109.46932 * 330.00214 * 14 12 10 18 18 C 1.46497 * 120.00453 * 180.02562 * 8 6 5 19 19 C 1.50703 * 109.47155 * 89.99471 * 18 8 6 20 20 O 1.21276 * 120.00006 * 0.02562 * 19 18 8 21 21 N 1.34776 * 119.99907 * 180.02562 * 19 18 8 22 22 C 1.46495 * 120.00069 * 180.02562 * 21 19 18 23 23 C 1.50704 * 109.47385 * 180.02562 * 22 21 19 24 24 C 1.34664 * 126.58651 * 265.03740 * 23 22 21 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.08994 * 109.47167 * 299.99892 * 1 2 3 30 30 H 1.08996 * 109.47423 * 60.00530 * 1 2 3 31 31 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47134 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46666 * 299.99933 * 3 2 1 34 34 H 1.08994 * 109.47138 * 60.00090 * 3 2 1 35 35 H 1.08998 * 109.47223 * 299.99995 * 4 2 1 36 36 H 1.09004 * 109.46921 * 59.99874 * 4 2 1 37 37 H 1.09000 * 109.47459 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47174 * 29.99790 * 9 8 6 39 39 H 1.09000 * 109.47298 * 150.00507 * 9 8 6 40 40 H 0.96998 * 120.00671 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.46693 * 330.00443 * 18 8 6 42 42 H 1.08997 * 109.47700 * 210.00082 * 18 8 6 43 43 H 0.97001 * 120.00018 * 0.02562 * 21 19 18 44 44 H 1.08999 * 109.47661 * 59.99724 * 22 21 19 45 45 H 1.09012 * 109.46930 * 299.99842 * 22 21 19 46 46 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 47 47 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9518 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 2.9115 -2.0172 3.4239 10 6 4.3618 -2.2046 3.0595 11 1 4.6280 -2.7522 2.1673 12 6 5.3487 -1.6772 3.8648 13 7 5.0246 -1.0108 4.9514 14 14 7.1464 -1.9100 3.4134 15 1 7.5910 -0.7833 2.5543 16 1 7.9671 -1.9431 4.6505 17 1 7.3100 -3.1889 2.6766 18 6 1.6743 -4.0668 2.5832 19 6 2.7002 -4.9570 1.9303 20 8 3.6649 -4.4688 1.3809 21 7 2.5456 -6.2956 1.9571 22 6 3.5431 -7.1610 1.3230 23 6 3.1381 -8.6026 1.4926 24 6 3.5479 -9.4427 2.4619 25 7 2.9547 -10.6289 2.2611 26 6 2.1990 -10.5579 1.1995 27 7 2.2824 -9.3094 0.6914 28 1 1.8217 -8.9758 -0.0943 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.6808 -0.9525 3.4607 39 1 2.7215 -2.4642 4.3997 40 1 5.7190 -0.6400 5.5182 41 1 0.7027 -4.2293 2.1165 42 1 1.6113 -4.3032 3.6453 43 1 1.7738 -6.6860 2.3962 44 1 4.5145 -6.9987 1.7901 45 1 3.6067 -6.9244 0.2607 46 1 4.2318 -9.2027 3.2626 47 1 1.6021 -11.3628 0.7967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184845469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:23 Heat of formation + Delta-G solvation = -50.341514 kcal Electronic energy + Delta-G solvation = -30365.893370 eV Core-core repulsion = 26164.519274 eV Total energy + Delta-G solvation = -4201.374095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27446 -40.20519 -39.10259 -36.81171 -35.00706 -34.52737 -33.34818 -32.66869 -32.41013 -30.66429 -28.40356 -27.08449 -27.03189 -26.72969 -25.32814 -22.96794 -21.82909 -21.46608 -21.07193 -20.19360 -18.78448 -18.30367 -17.07929 -16.97211 -16.32232 -16.06785 -15.77580 -15.26129 -15.13968 -14.94846 -14.50826 -14.40676 -14.26511 -13.94999 -13.67804 -13.55428 -13.28964 -12.97765 -12.84948 -12.60659 -12.23773 -12.13836 -11.86426 -11.60446 -11.50898 -11.50507 -11.25489 -11.11807 -10.90505 -10.71457 -10.63481 -10.30635 -10.24641 -10.04862 -9.96922 -9.79722 -9.37499 -9.15675 -8.84013 -8.65545 -8.35920 -7.83798 -5.97278 -3.98067 1.67138 2.78205 2.86825 2.93340 3.14622 3.37557 3.43074 3.46759 3.51708 3.78947 4.39300 4.50367 4.63355 4.68988 4.96643 5.09967 5.13103 5.19450 5.27385 5.31131 5.37239 5.40614 5.51773 5.64619 5.69850 5.74078 5.81474 5.96462 6.01479 6.03356 6.11465 6.19111 6.29470 6.47216 6.51789 6.56331 6.61359 6.74701 7.08868 7.12027 7.33937 7.49022 7.72348 7.80503 8.04383 8.25077 8.29260 8.64278 9.09214 9.24872 9.67640 11.11585 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.003745 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.233549 B = 7475.602480 C = 9618.208868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.339 6.339 6 C 0.664 3.336 7 O -0.602 6.602 8 N -0.566 5.566 9 C 0.243 3.757 10 C -0.521 4.521 11 H 0.085 0.915 12 C 0.059 3.941 13 N -0.903 5.903 14 Si 0.894 3.106 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.273 1.273 18 C 0.124 3.876 19 C 0.495 3.505 20 O -0.494 6.494 21 N -0.740 5.740 22 C 0.199 3.801 23 C -0.040 4.040 24 C -0.002 4.002 25 N -0.497 5.497 26 C 0.188 3.812 27 N -0.563 5.563 28 H 0.421 0.579 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.397 0.603 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.173 0.827 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 -9.389 -8.701 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.252 6.252 6 C 0.419 3.581 7 O -0.496 6.496 8 N -0.303 5.303 9 C 0.124 3.876 10 C -0.560 4.560 11 H 0.103 0.897 12 C -0.142 4.142 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.003 4.003 19 C 0.279 3.721 20 O -0.365 6.365 21 N -0.397 5.397 22 C 0.074 3.926 23 C -0.155 4.155 24 C -0.151 4.151 25 N -0.215 5.215 26 C -0.096 4.096 27 N -0.167 5.167 28 H 0.259 0.741 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.230 0.770 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.190 0.810 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.551 -9.656 -8.697 16.128 hybrid contribution 0.446 0.466 -0.844 1.062 sum -9.105 -9.191 -9.541 16.075 Atomic orbital electron populations 1.22497 0.94771 1.04690 1.01736 1.21916 0.93684 0.91714 0.83195 1.21808 1.02626 0.92880 1.02300 1.22463 1.01832 1.03216 0.96108 1.86499 1.70569 1.23624 1.44509 1.17844 0.78142 0.80562 0.81523 1.90757 1.43906 1.71066 1.43863 1.46731 1.52221 1.08802 1.22527 1.19522 0.89398 0.93598 0.85113 1.21889 0.90157 1.33917 1.10061 0.89749 1.24909 0.99061 0.95223 0.94958 1.69941 1.33178 1.36928 1.14266 0.86549 0.84908 0.78725 0.77595 1.20807 1.21479 1.19793 1.21035 0.96679 0.80828 1.01781 1.21424 0.88117 0.81850 0.80700 1.90755 1.30152 1.73795 1.41796 1.46096 1.27091 1.06091 1.60391 1.19464 0.93028 0.81117 0.98944 1.21331 1.01014 0.96123 0.97080 1.22276 1.03393 0.89219 1.00203 1.70343 1.11018 1.24480 1.15707 1.25038 1.02686 0.87572 0.94315 1.43340 1.36476 1.11635 1.25209 0.74134 0.92455 0.91920 0.89514 0.91303 0.90938 0.91606 0.89560 0.92103 0.92129 0.93636 0.94845 0.93016 0.88030 0.87409 0.76984 0.88925 0.91114 0.80963 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.37 37.16 0.31 -2.36 16 2 C 0.13 2.25 1.13 -90.62 -0.10 2.15 16 3 C -0.14 -1.99 8.85 37.16 0.33 -1.66 16 4 C -0.18 -2.95 8.37 37.16 0.31 -2.64 16 5 O -0.34 -7.32 8.71 -40.31 -0.35 -7.67 16 6 C 0.66 14.47 7.70 54.05 0.42 14.88 16 7 O -0.60 -12.79 11.46 -19.28 -0.22 -13.01 16 8 N -0.57 -12.19 2.01 -182.24 -0.37 -12.55 16 9 C 0.24 6.06 5.21 -5.19 -0.03 6.03 16 10 C -0.52 -14.60 8.97 -34.44 -0.31 -14.90 16 11 H 0.08 2.50 5.50 -52.48 -0.29 2.21 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.12 2.09 5.93 -5.19 -0.03 2.06 16 19 C 0.49 8.75 7.90 -10.98 -0.09 8.66 16 20 O -0.49 -11.27 13.76 5.56 0.08 -11.19 16 21 N -0.74 -9.45 5.55 -61.47 -0.34 -9.79 16 22 C 0.20 2.39 6.23 -5.19 -0.03 2.36 16 23 C -0.04 -0.41 6.61 -81.60 -0.54 -0.95 16 24 C 0.00 -0.02 11.79 -17.81 -0.21 -0.23 16 25 N -0.50 -5.85 11.25 -14.66 -0.16 -6.02 16 26 C 0.19 1.55 13.04 -90.37 -1.18 0.37 16 27 N -0.56 -4.35 6.15 -10.30 -0.06 -4.42 16 28 H 0.42 2.15 8.96 -40.82 -0.37 1.78 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.61 5.88 -51.93 -0.31 1.30 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 39 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.10 1.49 7.42 -51.92 -0.39 1.11 16 42 H 0.11 1.54 7.89 -51.93 -0.41 1.13 16 43 H 0.40 3.97 8.46 -40.82 -0.35 3.63 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 46 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.21 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -36.47 391.57 -8.05 -44.52 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.98 Total: 6.99 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -1.25 Total: 15.37 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.20 Total: -58.31 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.50 Total: -31.86 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.47 -8.05 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds