Wall clock time and date at job start Tue Mar 31 2020 21:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46868 * 2 1 4 4 C 1.53001 * 109.47498 * 240.00007 * 2 1 3 5 5 O 1.45206 * 109.47378 * 119.99686 * 2 1 3 6 6 C 1.34636 * 116.99410 * 60.00343 * 5 2 1 7 7 O 1.21508 * 120.00648 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99660 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00015 * 0.02562 * 8 6 5 10 10 C 1.50708 * 109.47213 * 269.99900 * 9 8 6 11 11 H 1.08008 * 119.99599 * 359.97438 * 10 9 8 12 12 C 1.37867 * 120.00354 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00187 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00351 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47172 * 89.99947 * 14 12 10 16 16 H 1.48494 * 109.47335 * 210.00132 * 14 12 10 17 17 H 1.48498 * 109.46932 * 330.00214 * 14 12 10 18 18 C 1.46497 * 120.00453 * 180.02562 * 8 6 5 19 19 C 1.50703 * 109.47155 * 89.99471 * 18 8 6 20 20 O 1.21276 * 120.00006 * 0.02562 * 19 18 8 21 21 N 1.34776 * 119.99907 * 180.02562 * 19 18 8 22 22 C 1.46495 * 120.00069 * 180.02562 * 21 19 18 23 23 C 1.50704 * 109.47385 * 180.02562 * 22 21 19 24 24 C 1.34664 * 126.58651 * 265.03740 * 23 22 21 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.08994 * 109.47167 * 299.99892 * 1 2 3 30 30 H 1.08996 * 109.47423 * 60.00530 * 1 2 3 31 31 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47134 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46666 * 299.99933 * 3 2 1 34 34 H 1.08994 * 109.47138 * 60.00090 * 3 2 1 35 35 H 1.08998 * 109.47223 * 299.99995 * 4 2 1 36 36 H 1.09004 * 109.46921 * 59.99874 * 4 2 1 37 37 H 1.09000 * 109.47459 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47174 * 29.99790 * 9 8 6 39 39 H 1.09000 * 109.47298 * 150.00507 * 9 8 6 40 40 H 0.96998 * 120.00671 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.46693 * 330.00443 * 18 8 6 42 42 H 1.08997 * 109.47700 * 210.00082 * 18 8 6 43 43 H 0.97001 * 120.00018 * 0.02562 * 21 19 18 44 44 H 1.08999 * 109.47661 * 59.99724 * 22 21 19 45 45 H 1.09012 * 109.46930 * 299.99842 * 22 21 19 46 46 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 47 47 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9518 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4171 9 6 2.9115 -2.0172 3.4239 10 6 4.3618 -2.2046 3.0595 11 1 4.6280 -2.7522 2.1673 12 6 5.3487 -1.6772 3.8648 13 7 5.0246 -1.0108 4.9514 14 14 7.1464 -1.9100 3.4134 15 1 7.5910 -0.7833 2.5543 16 1 7.9671 -1.9431 4.6505 17 1 7.3100 -3.1889 2.6766 18 6 1.6743 -4.0668 2.5832 19 6 2.7002 -4.9570 1.9303 20 8 3.6649 -4.4688 1.3809 21 7 2.5456 -6.2956 1.9571 22 6 3.5431 -7.1610 1.3230 23 6 3.1381 -8.6026 1.4926 24 6 3.5479 -9.4427 2.4619 25 7 2.9547 -10.6289 2.2611 26 6 2.1990 -10.5579 1.1995 27 7 2.2824 -9.3094 0.6914 28 1 1.8217 -8.9758 -0.0943 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.6808 -0.9525 3.4607 39 1 2.7215 -2.4642 4.3997 40 1 5.7190 -0.6400 5.5182 41 1 0.7027 -4.2293 2.1165 42 1 1.6113 -4.3032 3.6453 43 1 1.7738 -6.6860 2.3962 44 1 4.5145 -6.9987 1.7901 45 1 3.6067 -6.9244 0.2607 46 1 4.2318 -9.2027 3.2626 47 1 1.6021 -11.3628 0.7967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184845469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:22 Heat of formation + Delta-G solvation = -75.534503 kcal Electronic energy + Delta-G solvation = -30366.985820 eV Core-core repulsion = 26164.519274 eV Total energy + Delta-G solvation = -4202.466545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.03495 -41.76359 -40.50834 -38.30555 -36.62518 -35.88975 -34.79464 -34.45773 -33.43794 -31.73294 -29.93869 -28.46113 -28.29882 -28.23564 -26.42077 -24.97085 -22.99471 -22.49274 -21.89896 -21.51179 -20.24636 -19.29981 -18.73291 -18.60560 -17.79113 -17.73760 -17.02096 -16.74384 -16.43441 -16.36647 -15.98645 -15.54518 -15.39595 -15.29090 -14.94576 -14.70100 -14.43049 -14.37330 -14.15587 -13.91569 -13.78608 -13.43277 -13.27814 -13.16554 -13.05408 -12.84092 -12.78632 -12.75577 -12.56297 -12.43818 -12.21775 -11.90873 -11.86433 -11.24716 -11.08555 -11.02622 -10.95840 -10.82525 -10.53310 -10.08737 -9.68497 -9.41761 -8.13833 -6.20451 0.86708 1.35568 1.36877 1.38727 1.51178 1.75440 1.92573 2.11465 2.18056 2.43849 2.53398 3.11762 3.17861 3.62901 3.83967 3.88076 3.93210 3.99159 4.02921 4.09388 4.21194 4.36019 4.55175 4.59909 4.60838 4.64480 4.66120 4.77998 4.80102 4.80775 4.87770 4.91590 5.13379 5.19401 5.24462 5.34467 5.38181 5.41226 5.62910 5.65974 5.68108 5.87865 6.18665 6.48941 6.50619 6.58280 6.93113 7.06193 7.38373 7.43461 7.55567 8.93707 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.003745 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.233549 B = 7475.602480 C = 9618.208868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.114 3.886 3 C -0.134 4.134 4 C -0.172 4.172 5 O -0.368 6.368 6 C 0.658 3.342 7 O -0.601 6.601 8 N -0.573 5.573 9 C 0.261 3.739 10 C -0.527 4.527 11 H 0.066 0.934 12 C 0.017 3.983 13 N -0.927 5.927 14 Si 0.947 3.053 15 H -0.279 1.279 16 H -0.276 1.276 17 H -0.281 1.281 18 C 0.116 3.884 19 C 0.493 3.507 20 O -0.552 6.552 21 N -0.716 5.716 22 C 0.205 3.795 23 C -0.042 4.042 24 C -0.017 4.017 25 N -0.538 5.538 26 C 0.207 3.793 27 N -0.552 5.552 28 H 0.435 0.565 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.413 0.587 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.170 0.830 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -10.111 -9.915 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.229 4.229 5 O -0.282 6.282 6 C 0.413 3.587 7 O -0.495 6.495 8 N -0.309 5.309 9 C 0.140 3.860 10 C -0.566 4.566 11 H 0.084 0.916 12 C -0.182 4.182 13 N -0.568 5.568 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.201 1.201 17 H -0.206 1.206 18 C -0.009 4.009 19 C 0.279 3.721 20 O -0.429 6.429 21 N -0.372 5.372 22 C 0.081 3.919 23 C -0.158 4.158 24 C -0.166 4.166 25 N -0.257 5.257 26 C -0.077 4.077 27 N -0.156 5.156 28 H 0.276 0.724 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.250 0.750 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.187 0.813 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.020 -10.420 -9.921 18.123 hybrid contribution 0.803 0.609 -0.544 1.145 sum -10.217 -9.811 -10.465 17.611 Atomic orbital electron populations 1.22405 0.92931 1.03852 1.03526 1.22459 0.95333 0.92598 0.81864 1.21854 1.01646 0.91414 1.04216 1.22397 1.00603 1.02240 0.97676 1.86485 1.71242 1.23693 1.46755 1.17994 0.78263 0.80844 0.81574 1.90742 1.43948 1.71193 1.43598 1.46693 1.51805 1.10506 1.21939 1.19044 0.88550 0.92542 0.85829 1.22025 0.91938 1.33347 1.09319 0.91587 1.25540 1.02414 0.95161 0.95049 1.70012 1.34236 1.37620 1.14919 0.85728 0.81141 0.78135 0.77630 1.20471 1.20145 1.20588 1.21401 0.97353 0.78463 1.03705 1.21573 0.87393 0.83211 0.79957 1.90733 1.32419 1.75097 1.44606 1.45864 1.27478 1.04702 1.59168 1.19323 0.92130 0.82074 0.98403 1.20875 1.02173 0.95036 0.97727 1.22379 1.03790 0.89731 1.00672 1.70343 1.12767 1.24804 1.17825 1.25851 1.01004 0.88117 0.92744 1.43282 1.35749 1.11319 1.25250 0.72422 0.92237 0.88501 0.91570 0.92879 0.87023 0.91628 0.92045 0.88306 0.93934 0.96080 0.94986 0.92763 0.85496 0.84820 0.75002 0.90558 0.91356 0.81250 0.73394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 8.37 71.98 0.60 -4.17 16 2 C 0.11 3.80 1.13 -10.79 -0.01 3.79 16 3 C -0.13 -3.66 8.85 71.98 0.64 -3.02 16 4 C -0.17 -5.57 8.37 71.98 0.60 -4.96 16 5 O -0.37 -16.24 8.71 -55.46 -0.48 -16.72 16 6 C 0.66 29.15 7.70 129.79 1.00 30.15 16 7 O -0.60 -25.61 11.46 19.82 0.23 -25.39 16 8 N -0.57 -25.05 2.01 -960.90 -1.94 -26.99 16 9 C 0.26 13.38 5.21 85.63 0.45 13.83 16 10 C -0.53 -30.30 8.97 25.60 0.23 -30.07 16 11 H 0.07 4.05 5.50 -2.91 -0.02 4.03 16 12 C 0.02 0.96 5.46 84.65 0.46 1.42 16 13 N -0.93 -54.50 13.29 21.44 0.28 -54.22 16 14 Si 0.95 46.71 29.54 68.60 2.03 48.74 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 18 C 0.12 3.87 5.93 85.63 0.51 4.38 16 19 C 0.49 17.52 7.90 87.66 0.69 18.21 16 20 O -0.55 -26.00 13.76 -3.02 -0.04 -26.04 16 21 N -0.72 -17.83 5.55 -466.78 -2.59 -20.42 16 22 C 0.21 4.91 6.23 85.64 0.53 5.44 16 23 C -0.04 -0.82 6.61 40.95 0.27 -0.54 16 24 C -0.02 -0.37 11.79 83.52 0.98 0.61 16 25 N -0.54 -11.91 11.25 -200.31 -2.25 -14.17 16 26 C 0.21 2.85 13.04 180.26 2.35 5.20 16 27 N -0.55 -7.24 6.15 -186.49 -1.15 -8.39 16 28 H 0.44 3.25 8.96 -92.71 -0.83 2.42 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.15 5.88 -2.39 -0.01 2.13 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 2.29 5.88 -2.39 -0.01 2.28 16 36 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.02 1.18 7.38 -2.39 -0.02 1.16 16 39 H 0.03 1.64 7.89 -2.39 -0.02 1.62 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.13 3.54 7.42 -2.38 -0.02 3.52 16 42 H 0.13 3.67 7.89 -2.39 -0.02 3.65 16 43 H 0.41 7.59 8.46 -92.71 -0.78 6.80 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 47 H 0.25 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -81.78 391.57 2.79 -78.99 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.60 Total: 24.35 kcal Atomic # 6 Polarization: 30.95 SS G_CDS: 9.31 Total: 40.25 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -7.64 Total: -124.18 kcal Atomic # 8 Polarization: -67.85 SS G_CDS: -0.30 Total: -68.15 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -81.78 2.79 -78.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.451 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds