Wall clock time and date at job start Tue Mar 31 2020 21:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37451 * 126.48231 * 2 1 4 4 C 1.34490 * 106.94000 * 179.97438 * 3 2 1 5 5 N 1.34269 * 108.29705 * 0.02562 * 4 3 2 6 6 C 1.31134 * 109.29715 * 359.97438 * 5 4 3 7 7 N 1.38918 * 125.78000 * 179.74075 * 6 5 4 8 8 C 1.34774 * 120.00278 * 0.02562 * 7 6 5 9 9 O 1.21274 * 120.00003 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99882 * 180.02562 * 8 7 6 11 11 N 1.46502 * 109.46816 * 179.97438 * 10 8 7 12 12 C 1.46500 * 120.00338 * 90.00027 * 11 10 8 13 13 C 1.50702 * 109.47035 * 89.99685 * 12 11 10 14 14 H 1.07992 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99723 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47356 * 60.00239 * 17 15 13 19 19 H 1.48504 * 109.46850 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47392 * 300.00221 * 17 15 13 21 21 C 1.34774 * 119.99790 * 269.99727 * 11 10 8 22 22 O 1.21512 * 120.00337 * 0.02562 * 21 11 10 23 23 O 1.34645 * 119.99987 * 179.97438 * 21 11 10 24 24 C 1.45201 * 116.99859 * 179.97438 * 23 21 11 25 25 C 1.53005 * 109.47070 * 60.00518 * 24 23 21 26 26 C 1.52999 * 109.46889 * 180.02562 * 24 23 21 27 27 C 1.52995 * 109.47337 * 300.00325 * 24 23 21 28 28 H 1.08997 * 109.47330 * 270.02426 * 1 2 3 29 29 H 1.09000 * 109.47315 * 30.02747 * 1 2 3 30 30 H 1.09004 * 109.46953 * 150.02286 * 1 2 3 31 31 H 1.07996 * 126.53294 * 359.97438 * 3 2 1 32 32 H 1.08000 * 125.84711 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99863 * 180.02562 * 7 6 5 34 34 H 1.08990 * 109.46986 * 299.99683 * 10 8 7 35 35 H 1.09003 * 109.47196 * 60.00088 * 10 8 7 36 36 H 1.08996 * 109.47194 * 210.00029 * 12 11 10 37 37 H 1.09005 * 109.46616 * 330.00050 * 12 11 10 38 38 H 0.96993 * 120.00687 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47086 * 59.99784 * 25 24 23 40 40 H 1.08997 * 109.46968 * 179.97438 * 25 24 23 41 41 H 1.09003 * 109.46677 * 299.99399 * 25 24 23 42 42 H 1.09005 * 109.47052 * 59.99969 * 26 24 23 43 43 H 1.08997 * 109.47255 * 180.02562 * 26 24 23 44 44 H 1.08998 * 109.47451 * 300.00329 * 26 24 23 45 45 H 1.08997 * 109.47219 * 60.00152 * 27 24 23 46 46 H 1.08997 * 109.47073 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.47189 * 299.99899 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2822 1.1052 0.0000 4 6 3.5497 0.6553 0.0006 5 7 3.5205 -0.6871 0.0004 6 6 2.2737 -1.0934 0.0002 7 7 1.8507 -2.4166 -0.0051 8 6 2.7572 -3.4139 -0.0103 9 8 3.9422 -3.1562 -0.0107 10 6 2.2982 -4.8494 -0.0167 11 7 3.4651 -5.7351 -0.0221 12 6 4.0499 -6.1841 1.2439 13 6 3.3913 -7.4697 1.6735 14 1 2.6152 -7.9086 1.0642 15 6 3.7798 -8.0855 2.8444 16 7 4.7246 -7.5507 3.5865 17 14 2.9629 -9.6787 3.3772 18 1 3.1777 -10.7169 2.3375 19 1 3.5549 -10.1332 4.6610 20 1 1.5063 -9.4522 3.5570 21 6 4.0006 -6.1370 -1.1917 22 8 3.5159 -5.7643 -2.2418 23 8 5.0734 -6.9506 -1.1968 24 6 5.5967 -7.3435 -2.4930 25 6 6.0230 -6.0964 -3.2701 26 6 6.8051 -8.2614 -2.2981 27 6 4.5131 -8.0870 -3.2764 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9668 2.1380 -0.0004 32 1 4.4385 1.2687 0.0003 33 1 0.9028 -2.6228 -0.0052 34 1 1.6987 -5.0431 0.8727 35 1 1.6976 -5.0349 -0.9072 36 1 5.1190 -6.3500 1.1117 37 1 3.8921 -5.4222 2.0074 38 1 4.9981 -7.9841 4.4100 39 1 6.7950 -5.5667 -2.7120 40 1 6.4163 -6.3914 -4.2430 41 1 5.1618 -5.4428 -3.4090 42 1 6.5010 -9.1499 -1.7445 43 1 7.1983 -8.5560 -3.2711 44 1 7.5773 -7.7322 -1.7398 45 1 3.6520 -7.4334 -3.4152 46 1 4.9061 -8.3823 -4.2492 47 1 4.2095 -8.9755 -2.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184845487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:15 Heat of formation + Delta-G solvation = -27.750854 kcal Electronic energy + Delta-G solvation = -30561.101694 eV Core-core repulsion = 26360.707203 eV Total energy + Delta-G solvation = -4200.394491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02310 -40.18156 -39.16322 -36.78050 -34.90377 -34.58322 -33.93415 -33.31002 -32.51595 -29.36147 -27.98370 -27.13650 -26.99411 -26.97840 -26.46612 -23.04505 -22.61380 -21.54026 -20.72127 -19.60723 -18.70190 -18.08616 -17.11256 -16.89246 -16.24368 -16.08163 -16.07186 -15.64402 -15.17257 -14.72636 -14.69467 -14.37652 -14.12714 -13.82001 -13.58339 -13.46121 -13.36993 -13.10522 -12.90046 -12.80739 -12.37142 -12.10369 -11.82803 -11.70705 -11.48561 -11.44244 -11.28355 -11.05930 -10.95034 -10.74260 -10.65260 -10.50988 -10.16741 -10.03358 -9.77568 -9.73499 -9.61114 -9.39423 -9.34224 -8.47468 -7.86455 -7.81618 -6.08091 -4.15128 1.93193 2.17011 2.88354 2.90620 3.23905 3.28398 3.33875 3.36074 3.49155 3.69010 4.36814 4.40021 4.65310 4.70666 4.79626 4.94889 5.04501 5.16005 5.20235 5.25317 5.33342 5.35378 5.49484 5.56555 5.68860 5.80909 5.87018 5.87039 6.04328 6.06639 6.16007 6.20660 6.24929 6.35383 6.54080 6.68197 6.71343 6.79564 7.16286 7.19328 7.22968 7.39456 7.55699 7.84639 8.14900 8.22695 8.26599 8.47605 8.86504 9.17143 9.50769 10.99460 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.003845 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.877178 B = 7279.585083 C = 9275.017105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C -0.072 4.072 4 C -0.011 4.011 5 N -0.470 5.470 6 C 0.442 3.558 7 N -0.646 5.646 8 C 0.493 3.507 9 O -0.453 6.453 10 C 0.129 3.871 11 N -0.565 5.565 12 C 0.248 3.752 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.665 3.335 22 O -0.600 6.600 23 O -0.338 6.338 24 C 0.133 3.867 25 C -0.180 4.180 26 C -0.139 4.139 27 C -0.179 4.179 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.411 0.589 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 11.046 -9.286 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.175 5.175 3 C -0.203 4.203 4 C -0.159 4.159 5 N -0.194 5.194 6 C 0.091 3.909 7 N -0.301 5.301 8 C 0.277 3.723 9 O -0.317 6.317 10 C 0.001 3.999 11 N -0.301 5.301 12 C 0.129 3.871 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.421 3.579 22 O -0.493 6.493 23 O -0.251 6.251 24 C 0.095 3.905 25 C -0.237 4.237 26 C -0.196 4.196 27 C -0.237 4.237 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.193 0.807 32 H 0.188 0.812 33 H 0.247 0.753 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.118 10.648 -9.434 15.908 hybrid contribution -1.748 -0.272 0.443 1.823 sum -8.866 10.376 -8.990 16.343 Atomic orbital electron populations 1.21991 0.76997 1.04531 1.03521 1.45376 1.07002 1.05706 1.59435 1.22426 0.90994 0.91495 1.15342 1.22302 0.96444 0.90876 1.06286 1.70904 1.15039 1.11136 1.22350 1.19720 0.85632 0.81734 1.03840 1.42798 1.11048 1.00582 1.75715 1.21926 0.86643 0.87332 0.76402 1.90840 1.15839 1.83022 1.42012 1.20989 0.89086 0.84060 1.05732 1.46622 1.30276 1.46610 1.06602 1.19442 0.94989 0.94686 0.77958 1.21418 1.21374 1.07822 1.06852 0.92202 1.24918 0.94992 0.97621 0.96228 1.69932 1.28910 1.39585 1.14310 0.86576 0.79474 0.83577 0.77870 1.20148 1.21203 1.20239 1.17831 0.79019 0.77256 0.83808 1.90769 1.65199 1.62388 1.30974 1.86491 1.43224 1.61706 1.33703 1.21924 0.93493 0.94479 0.80600 1.22486 1.03327 0.98315 0.99567 1.21808 0.96188 0.99434 1.02175 1.22478 1.00440 1.01204 0.99538 0.90531 0.89371 0.89997 0.80702 0.81175 0.75315 0.86265 0.87250 0.93494 0.94646 0.92530 0.92325 0.91992 0.89491 0.91353 0.90922 0.91552 0.89527 0.92005 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.01 59.85 0.66 1.08 16 2 N -0.48 -5.39 3.19 -124.84 -0.40 -5.79 16 3 C -0.07 -0.79 11.60 -16.36 -0.19 -0.97 16 4 C -0.01 -0.16 11.85 -17.81 -0.21 -0.37 16 5 N -0.47 -8.77 9.43 -13.83 -0.13 -8.90 16 6 C 0.44 6.85 8.43 -319.11 -2.69 4.16 16 7 N -0.65 -9.06 5.40 -12.53 -0.07 -9.12 16 8 C 0.49 9.07 7.86 -10.98 -0.09 8.98 16 9 O -0.45 -10.67 15.11 5.56 0.08 -10.59 16 10 C 0.13 2.24 5.89 -5.19 -0.03 2.21 16 11 N -0.57 -12.62 1.94 -182.24 -0.35 -12.97 16 12 C 0.25 6.41 5.17 -5.19 -0.03 6.38 16 13 C -0.54 -14.38 9.39 -34.44 -0.32 -14.71 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 17 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.67 15.09 7.70 54.05 0.42 15.50 16 22 O -0.60 -13.26 11.46 -19.28 -0.22 -13.48 16 23 O -0.34 -7.58 8.71 -40.34 -0.35 -7.94 16 24 C 0.13 2.35 1.13 -90.62 -0.10 2.25 16 25 C -0.18 -3.02 8.37 37.16 0.31 -2.71 16 26 C -0.14 -2.07 8.85 37.16 0.33 -1.74 16 27 C -0.18 -2.91 8.37 37.16 0.31 -2.60 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.35 7.51 -51.93 -0.39 -0.04 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 33 H 0.41 3.70 7.96 -40.82 -0.33 3.38 16 34 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 35 H 0.11 1.65 7.42 -51.93 -0.39 1.27 16 36 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 37 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.67 5.88 -51.93 -0.31 1.36 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -38.28 394.13 -8.64 -46.92 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.13 Total: 5.81 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: -1.73 Total: 19.16 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.21 Total: -61.68 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.49 Total: -32.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.28 -8.64 -46.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.171 kcal (2) G-P(sol) polarization free energy of solvation -38.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds