Wall clock time and date at job start Tue Mar 31 2020 21:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37451 * 126.48231 * 2 1 4 4 C 1.34490 * 106.94000 * 179.97438 * 3 2 1 5 5 N 1.34269 * 108.29705 * 0.02562 * 4 3 2 6 6 C 1.31134 * 109.29715 * 359.97438 * 5 4 3 7 7 N 1.38918 * 125.78000 * 179.74075 * 6 5 4 8 8 C 1.34774 * 120.00278 * 0.02562 * 7 6 5 9 9 O 1.21274 * 120.00003 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99882 * 180.02562 * 8 7 6 11 11 N 1.46502 * 109.46816 * 179.97438 * 10 8 7 12 12 C 1.46500 * 120.00338 * 90.00027 * 11 10 8 13 13 C 1.50702 * 109.47035 * 89.99685 * 12 11 10 14 14 H 1.07992 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99723 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47356 * 60.00239 * 17 15 13 19 19 H 1.48504 * 109.46850 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47392 * 300.00221 * 17 15 13 21 21 C 1.34774 * 119.99790 * 269.99727 * 11 10 8 22 22 O 1.21512 * 120.00337 * 0.02562 * 21 11 10 23 23 O 1.34645 * 119.99987 * 179.97438 * 21 11 10 24 24 C 1.45201 * 116.99859 * 179.97438 * 23 21 11 25 25 C 1.53005 * 109.47070 * 60.00518 * 24 23 21 26 26 C 1.52999 * 109.46889 * 180.02562 * 24 23 21 27 27 C 1.52995 * 109.47337 * 300.00325 * 24 23 21 28 28 H 1.08997 * 109.47330 * 270.02426 * 1 2 3 29 29 H 1.09000 * 109.47315 * 30.02747 * 1 2 3 30 30 H 1.09004 * 109.46953 * 150.02286 * 1 2 3 31 31 H 1.07996 * 126.53294 * 359.97438 * 3 2 1 32 32 H 1.08000 * 125.84711 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99863 * 180.02562 * 7 6 5 34 34 H 1.08990 * 109.46986 * 299.99683 * 10 8 7 35 35 H 1.09003 * 109.47196 * 60.00088 * 10 8 7 36 36 H 1.08996 * 109.47194 * 210.00029 * 12 11 10 37 37 H 1.09005 * 109.46616 * 330.00050 * 12 11 10 38 38 H 0.96993 * 120.00687 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47086 * 59.99784 * 25 24 23 40 40 H 1.08997 * 109.46968 * 179.97438 * 25 24 23 41 41 H 1.09003 * 109.46677 * 299.99399 * 25 24 23 42 42 H 1.09005 * 109.47052 * 59.99969 * 26 24 23 43 43 H 1.08997 * 109.47255 * 180.02562 * 26 24 23 44 44 H 1.08998 * 109.47451 * 300.00329 * 26 24 23 45 45 H 1.08997 * 109.47219 * 60.00152 * 27 24 23 46 46 H 1.08997 * 109.47073 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.47189 * 299.99899 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2822 1.1052 0.0000 4 6 3.5497 0.6553 0.0006 5 7 3.5205 -0.6871 0.0004 6 6 2.2737 -1.0934 0.0002 7 7 1.8507 -2.4166 -0.0051 8 6 2.7572 -3.4139 -0.0103 9 8 3.9422 -3.1562 -0.0107 10 6 2.2982 -4.8494 -0.0167 11 7 3.4651 -5.7351 -0.0221 12 6 4.0499 -6.1841 1.2439 13 6 3.3913 -7.4697 1.6735 14 1 2.6152 -7.9086 1.0642 15 6 3.7798 -8.0855 2.8444 16 7 4.7246 -7.5507 3.5865 17 14 2.9629 -9.6787 3.3772 18 1 3.1777 -10.7169 2.3375 19 1 3.5549 -10.1332 4.6610 20 1 1.5063 -9.4522 3.5570 21 6 4.0006 -6.1370 -1.1917 22 8 3.5159 -5.7643 -2.2418 23 8 5.0734 -6.9506 -1.1968 24 6 5.5967 -7.3435 -2.4930 25 6 6.0230 -6.0964 -3.2701 26 6 6.8051 -8.2614 -2.2981 27 6 4.5131 -8.0870 -3.2764 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9668 2.1380 -0.0004 32 1 4.4385 1.2687 0.0003 33 1 0.9028 -2.6228 -0.0052 34 1 1.6987 -5.0431 0.8727 35 1 1.6976 -5.0349 -0.9072 36 1 5.1190 -6.3500 1.1117 37 1 3.8921 -5.4222 2.0074 38 1 4.9981 -7.9841 4.4100 39 1 6.7950 -5.5667 -2.7120 40 1 6.4163 -6.3914 -4.2430 41 1 5.1618 -5.4428 -3.4090 42 1 6.5010 -9.1499 -1.7445 43 1 7.1983 -8.5560 -3.2711 44 1 7.5773 -7.7322 -1.7398 45 1 3.6520 -7.4334 -3.4152 46 1 4.9061 -8.3823 -4.2492 47 1 4.2095 -8.9755 -2.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184845487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:14 Heat of formation + Delta-G solvation = -52.057502 kcal Electronic energy + Delta-G solvation = -30562.155710 eV Core-core repulsion = 26360.707203 eV Total energy + Delta-G solvation = -4201.448506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04051 -41.80288 -40.59536 -38.35337 -36.66072 -35.90537 -34.86079 -34.83095 -34.50722 -30.77552 -29.43578 -28.35853 -28.31125 -28.24674 -27.65735 -25.04165 -23.98166 -22.72770 -21.95338 -20.85738 -20.25812 -19.19011 -18.89742 -18.45883 -17.92546 -17.68558 -17.08386 -16.83358 -16.73399 -16.41457 -16.01638 -15.89545 -15.44578 -15.09019 -14.99686 -14.71208 -14.35788 -14.34172 -14.28743 -13.87733 -13.50915 -13.41429 -13.32904 -13.17835 -13.04417 -12.88861 -12.79402 -12.70598 -12.52227 -12.47463 -12.25628 -11.98716 -11.84028 -11.75756 -11.38248 -11.25921 -10.99529 -10.64992 -10.58339 -10.56675 -9.65548 -8.86507 -8.17380 -6.33654 0.86637 1.04574 1.43748 1.46946 1.48731 1.55889 1.64716 1.90601 2.34356 2.35808 2.43800 3.06595 3.13509 3.50187 3.82634 3.87054 3.89244 4.01509 4.03800 4.13735 4.32549 4.40740 4.46517 4.58478 4.64500 4.65136 4.71137 4.72447 4.76753 4.78722 4.86784 4.87589 4.90491 5.11880 5.21635 5.26674 5.33791 5.39302 5.56208 5.59498 5.73425 5.78357 6.04172 6.09789 6.27253 6.44268 6.76814 7.02146 7.33764 7.35806 7.48066 8.90235 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.003845 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.877178 B = 7279.585083 C = 9275.017105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.471 5.471 3 C -0.034 4.034 4 C -0.058 4.058 5 N -0.536 5.536 6 C 0.406 3.594 7 N -0.624 5.624 8 C 0.496 3.504 9 O -0.517 6.517 10 C 0.126 3.874 11 N -0.573 5.573 12 C 0.272 3.728 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.014 3.986 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.658 3.342 22 O -0.599 6.599 23 O -0.368 6.368 24 C 0.113 3.887 25 C -0.171 4.171 26 C -0.134 4.134 27 C -0.171 4.171 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.180 0.820 33 H 0.434 0.566 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.006 0.994 37 H 0.014 0.986 38 H 0.267 0.733 39 H 0.045 0.955 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 11.027 -10.371 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.161 5.161 3 C -0.166 4.166 4 C -0.205 4.205 5 N -0.262 5.262 6 C 0.055 3.945 7 N -0.281 5.281 8 C 0.280 3.720 9 O -0.387 6.387 10 C 0.000 4.000 11 N -0.309 5.309 12 C 0.151 3.849 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.185 4.185 16 N -0.567 5.567 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.185 1.185 21 C 0.414 3.586 22 O -0.493 6.493 23 O -0.282 6.282 24 C 0.077 3.923 25 C -0.229 4.229 26 C -0.191 4.191 27 C -0.228 4.228 28 H 0.110 0.890 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.242 0.758 32 H 0.197 0.803 33 H 0.275 0.725 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.024 0.976 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.016 10.663 -10.546 18.034 hybrid contribution -0.897 -0.099 0.718 1.153 sum -10.913 10.564 -9.828 18.091 Atomic orbital electron populations 1.22469 0.73419 1.06835 1.05299 1.45643 1.08950 1.04215 1.57271 1.23165 0.89697 0.93131 1.10628 1.22685 0.98805 0.89848 1.09153 1.70714 1.17997 1.13804 1.23674 1.19666 0.86039 0.82702 1.06095 1.42311 1.11605 0.99862 1.74276 1.22002 0.86220 0.88322 0.75435 1.90817 1.18466 1.84002 1.45371 1.21326 0.87748 0.82807 1.08102 1.46608 1.31473 1.47492 1.05368 1.18868 0.92992 0.94110 0.78942 1.21622 1.21348 1.08033 1.07021 0.91716 1.25825 0.95397 1.01144 0.96158 1.70079 1.30427 1.41346 1.14806 0.85456 0.79126 0.78876 0.77278 1.19767 1.20994 1.18466 1.17984 0.79243 0.77450 0.83910 1.90753 1.65356 1.62505 1.30637 1.86483 1.43199 1.61664 1.36853 1.22484 0.94959 0.95501 0.79348 1.22405 1.01809 0.97426 1.01226 1.21856 0.94692 0.98246 1.04293 1.22397 0.99219 1.00134 1.01015 0.88950 0.86464 0.88490 0.75806 0.80250 0.72533 0.83863 0.84597 0.97585 0.96809 0.92422 0.93598 0.88120 0.92211 0.92008 0.86851 0.92479 0.91635 0.88325 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 11.01 127.77 1.41 1.87 16 2 N -0.47 -9.46 3.19 -548.89 -1.75 -11.22 16 3 C -0.03 -0.67 11.60 82.95 0.96 0.30 16 4 C -0.06 -1.68 11.85 83.46 0.99 -0.69 16 5 N -0.54 -20.96 9.43 -197.67 -1.86 -22.83 16 6 C 0.41 12.65 8.43 260.20 2.19 14.84 16 7 N -0.62 -17.49 5.40 -311.96 -1.68 -19.18 16 8 C 0.50 18.93 7.86 87.66 0.69 19.62 16 9 O -0.52 -26.11 15.11 -3.01 -0.05 -26.16 16 10 C 0.13 4.45 5.89 85.63 0.50 4.95 16 11 N -0.57 -26.66 1.94 -960.89 -1.87 -28.53 16 12 C 0.27 14.79 5.17 85.63 0.44 15.23 16 13 C -0.54 -29.66 9.39 25.60 0.24 -29.42 16 14 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 15 C 0.01 0.79 5.46 84.66 0.46 1.26 16 16 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 17 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 C 0.66 31.03 7.70 129.79 1.00 32.03 16 22 O -0.60 -27.13 11.46 19.80 0.23 -26.90 16 23 O -0.37 -17.24 8.71 -55.54 -0.48 -17.72 16 24 C 0.11 4.03 1.13 -10.79 -0.01 4.02 16 25 C -0.17 -5.77 8.37 71.98 0.60 -5.16 16 26 C -0.13 -3.88 8.85 71.98 0.64 -3.24 16 27 C -0.17 -5.34 8.37 71.98 0.60 -4.74 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.48 7.51 -2.38 -0.02 0.47 16 31 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.43 7.20 7.96 -92.71 -0.74 6.47 16 34 H 0.14 4.25 8.07 -2.39 -0.02 4.23 16 35 H 0.14 4.01 7.42 -2.39 -0.02 3.99 16 36 H 0.01 0.37 7.37 -2.39 -0.02 0.36 16 37 H 0.01 0.80 8.07 -2.38 -0.02 0.78 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 2.34 5.88 -2.39 -0.01 2.33 16 42 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 2.33 5.88 -2.39 -0.01 2.32 16 46 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -90.73 394.13 5.80 -84.92 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.25 Total: 26.73 kcal Atomic # 6 Polarization: 40.14 SS G_CDS: 10.72 Total: 50.86 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -6.88 Total: -136.42 kcal Atomic # 8 Polarization: -70.48 SS G_CDS: -0.30 Total: -70.78 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -90.73 5.80 -84.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.863 kcal (2) G-P(sol) polarization free energy of solvation -90.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds