Wall clock time and date at job start Tue Mar 31 2020 20:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47161 * 2 1 4 4 N 1.29949 * 126.28838 * 270.01936 * 3 2 1 5 5 O 1.21304 * 110.25218 * 179.68689 * 4 3 2 6 6 C 1.33648 * 109.80904 * 0.46949 * 5 4 3 7 7 C 1.50699 * 126.54798 * 179.79946 * 6 5 4 8 8 C 1.53002 * 109.47051 * 269.68688 * 7 6 5 9 9 C 1.53001 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46956 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00008 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99890 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99803 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.78470 * 36.79251 * 13 12 10 15 15 C 1.54325 * 110.72250 * 273.54657 * 13 12 10 16 16 N 1.47018 * 107.40412 * 219.52320 * 15 13 12 17 17 C 1.36936 * 125.64999 * 178.82784 * 16 15 13 18 18 H 1.08004 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00358 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46977 * 60.00100 * 21 19 17 23 23 H 1.48497 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46946 * 300.00062 * 21 19 17 25 25 C 1.47426 * 108.70517 * 358.86539 * 16 15 13 26 26 C 1.54914 * 104.82992 * 24.12623 * 25 16 15 27 27 H 1.09000 * 111.00339 * 81.07133 * 26 25 16 28 28 O 1.42900 * 111.00244 * 204.91582 * 26 25 16 29 29 N 1.31131 * 106.89785 * 359.54153 * 6 5 4 30 30 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47009 * 300.00417 * 1 2 3 32 32 H 1.08994 * 109.47039 * 59.99919 * 1 2 3 33 33 H 1.08997 * 109.47009 * 239.99583 * 2 1 3 34 34 H 1.09007 * 109.46696 * 119.99933 * 2 1 3 35 35 H 1.08998 * 109.46867 * 149.69246 * 7 6 5 36 36 H 1.08993 * 109.47048 * 29.69103 * 7 6 5 37 37 H 1.08998 * 109.46829 * 60.00535 * 8 7 6 38 38 H 1.09000 * 109.47560 * 300.00520 * 8 7 6 39 39 H 1.08998 * 109.47063 * 60.00472 * 9 8 7 40 40 H 1.09000 * 109.47222 * 300.00520 * 9 8 7 41 41 H 0.96997 * 119.99763 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.88192 * 100.02760 * 15 13 12 43 43 H 1.09000 * 109.88128 * 339.01612 * 15 13 12 44 44 H 0.96996 * 119.99954 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.36956 * 142.96999 * 25 16 15 46 46 H 1.09003 * 110.36599 * 265.28903 * 25 16 15 47 47 H 0.96701 * 114.00208 * 298.55206 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2884 2.1460 -1.0475 5 8 2.6713 3.2472 -0.7124 6 6 2.7063 3.3281 0.6212 7 6 3.1285 4.5228 1.4370 8 6 4.6315 4.4465 1.7128 9 6 5.0601 5.6591 2.5416 10 6 6.5406 5.5844 2.8127 11 8 7.1892 4.6531 2.3848 12 7 7.1441 6.5528 3.5299 13 6 8.5834 6.4804 3.7930 14 1 9.1139 6.0726 2.9325 15 6 8.8660 5.6409 5.0567 16 7 9.9537 6.3037 5.7909 17 6 10.4843 5.8844 6.9816 18 1 10.1016 4.9948 7.4599 19 6 11.5133 6.6031 7.5745 20 7 11.9786 7.6880 6.9924 21 14 12.2366 6.0314 9.1991 22 1 12.7991 4.6666 9.0375 23 1 13.3140 6.9641 9.6167 24 1 11.1721 6.0088 10.2342 25 6 10.3779 7.4952 5.0334 26 6 9.1471 7.8776 4.1739 27 1 8.4221 8.4429 4.7595 28 8 9.5419 8.6063 3.0098 29 7 2.2977 2.1712 1.0841 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.5855 4.5276 2.3821 36 1 2.9062 5.4362 0.8855 37 1 5.1745 4.4417 0.7677 38 1 4.8539 3.5330 2.2643 39 1 4.5171 5.6636 3.4867 40 1 4.8377 6.5729 1.9905 41 1 6.6254 7.2977 3.8718 42 1 9.1707 4.6337 4.7722 43 1 7.9723 5.5957 5.6792 44 1 12.6978 8.1901 7.4064 45 1 10.6321 8.3073 5.7146 46 1 11.2275 7.2555 4.3939 47 1 9.9866 9.4433 3.2016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198646281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:30 Heat of formation + Delta-G solvation = -4.064107 kcal Electronic energy + Delta-G solvation = -28392.118301 eV Core-core repulsion = 24192.750945 eV Total energy + Delta-G solvation = -4199.367356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.86376 -39.79790 -37.92762 -36.69827 -35.83352 -35.09157 -34.05339 -33.51567 -31.90842 -31.56477 -29.09426 -28.07464 -26.86378 -25.45285 -24.62427 -23.77956 -22.67213 -21.18550 -20.80478 -20.33521 -19.90195 -18.32273 -17.80601 -17.29010 -17.00996 -16.59659 -16.07928 -15.74230 -15.50717 -15.07063 -14.75842 -14.46980 -14.27501 -13.92700 -13.79321 -13.46109 -13.40263 -13.08562 -12.94093 -12.68649 -12.44245 -12.21133 -12.17837 -11.94593 -11.87774 -11.68836 -11.58409 -11.46248 -11.29002 -11.27056 -11.08670 -11.02902 -10.84035 -10.23596 -10.17559 -9.96591 -9.81130 -9.71518 -9.31484 -8.80314 -8.74449 -6.95107 -5.75015 -3.17370 0.85155 1.92310 2.49069 2.78143 3.22860 3.35041 3.37371 3.41158 3.42642 3.70846 4.36829 4.40403 4.50844 4.56271 4.58260 4.70435 4.72944 4.76241 4.93224 5.05945 5.13216 5.17960 5.25550 5.32992 5.35675 5.39317 5.44432 5.51731 5.60785 5.63913 5.65564 5.71056 5.79444 5.84391 5.96470 6.07224 6.15799 6.46181 6.65548 6.90498 7.27598 7.49148 7.64584 7.71536 7.88564 8.06253 8.22327 8.39583 9.11139 9.71651 10.33945 11.29292 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.001786 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.367286 B =15677.025015 C =16730.255910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.171 3.829 4 N -0.387 5.387 5 O 0.077 5.923 6 C 0.189 3.811 7 C -0.029 4.029 8 C -0.103 4.103 9 C -0.138 4.138 10 C 0.511 3.489 11 O -0.540 6.540 12 N -0.715 5.715 13 C 0.142 3.858 14 H 0.098 0.902 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.918 3.082 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.128 3.872 26 C 0.067 3.933 27 H 0.062 0.938 28 O -0.567 6.567 29 N -0.480 5.480 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.399 0.601 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.254 0.746 45 H 0.113 0.887 46 H 0.025 0.975 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.234 -3.360 -12.078 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.095 5.095 5 O 0.018 5.982 6 C -0.032 4.032 7 C -0.067 4.067 8 C -0.142 4.142 9 C -0.178 4.178 10 C 0.297 3.703 11 O -0.417 6.417 12 N -0.366 5.366 13 C 0.037 3.963 14 H 0.116 0.884 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.749 3.251 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.003 3.997 26 C 0.007 3.993 27 H 0.080 0.920 28 O -0.372 6.372 29 N -0.214 5.214 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.233 0.767 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.043 0.957 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.072 -5.090 -13.057 26.145 hybrid contribution 0.530 0.673 1.330 1.582 sum -21.542 -4.417 -11.727 24.922 Atomic orbital electron populations 1.21730 0.93272 1.02860 1.02606 1.19944 0.96793 0.85707 1.04818 1.25906 1.00230 1.00559 0.83529 1.74633 1.17981 0.92896 1.23963 1.85296 1.61003 1.26980 1.24877 1.28820 0.95189 0.96990 0.82153 1.20339 0.98034 0.90076 0.98300 1.21332 0.91726 0.99196 1.01906 1.21612 0.93483 1.00276 1.02456 1.20533 0.89722 0.82197 0.77892 1.90730 1.66509 1.33257 1.51228 1.45986 1.09789 1.25911 1.54877 1.22030 0.79492 0.95715 0.99085 0.88363 1.21621 0.92263 0.95268 0.90532 1.44276 1.39096 1.27185 1.22202 1.19063 1.13385 1.07702 0.94982 0.90251 1.24800 0.98682 0.97725 0.99380 1.69715 1.30034 1.18282 1.39313 0.86092 0.78509 0.77730 0.82818 1.21103 1.21496 1.21082 1.22577 0.90799 0.92947 0.93413 1.23685 0.98615 0.90674 0.86347 0.92037 1.86399 1.80484 1.37920 1.32400 1.71911 1.18144 1.01983 1.29361 0.90984 0.91978 0.92390 0.89071 0.88481 0.86934 0.87700 0.90187 0.89950 0.88339 0.88410 0.76741 0.94916 0.95235 0.93530 0.86922 0.95690 0.77472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.17 1.84 7.47 -156.37 -1.17 0.67 16 4 N -0.39 -4.57 12.16 30.91 0.38 -4.20 16 5 O 0.08 0.83 11.31 18.09 0.20 1.03 16 6 C 0.19 1.79 7.77 -13.05 -0.10 1.69 16 7 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 8 C -0.10 -0.86 4.49 -26.73 -0.12 -0.98 16 9 C -0.14 -1.08 5.70 -27.88 -0.16 -1.23 16 10 C 0.51 6.97 7.83 -10.98 -0.09 6.88 16 11 O -0.54 -9.87 15.71 5.55 0.09 -9.79 16 12 N -0.72 -9.93 5.13 -51.90 -0.27 -10.19 16 13 C 0.14 2.60 2.98 -65.96 -0.20 2.40 16 14 H 0.10 2.03 7.70 -51.93 -0.40 1.63 16 15 C 0.13 2.79 6.98 -3.07 -0.02 2.77 16 16 N -0.60 -15.13 3.39 -170.07 -0.58 -15.71 16 17 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 21 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.13 2.99 5.62 -2.53 -0.01 2.98 16 26 C 0.07 1.22 4.05 -24.44 -0.10 1.12 16 27 H 0.06 1.02 8.01 -51.93 -0.42 0.61 16 28 O -0.57 -9.38 13.48 -35.23 -0.47 -9.85 16 29 N -0.48 -5.37 11.55 -9.86 -0.11 -5.48 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 4.27 8.53 -40.82 -0.35 3.92 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.61 8.03 -51.93 -0.42 0.20 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.38 4.78 9.11 45.56 0.42 5.19 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -35.46 393.79 -8.00 -43.46 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.51 Total: 5.29 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.19 Total: 8.35 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.02 Total: -61.06 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.46 -8.00 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198646281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.393 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds