Wall clock time and date at job start Tue Mar 31 2020 20:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47161 * 2 1 4 4 N 1.29949 * 126.28838 * 270.01936 * 3 2 1 5 5 O 1.21304 * 110.25218 * 179.68689 * 4 3 2 6 6 C 1.33648 * 109.80904 * 0.46949 * 5 4 3 7 7 C 1.50699 * 126.54798 * 179.79946 * 6 5 4 8 8 C 1.53002 * 109.47051 * 269.68688 * 7 6 5 9 9 C 1.53001 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46956 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00008 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99890 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99803 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.78470 * 36.79251 * 13 12 10 15 15 C 1.54325 * 110.72250 * 273.54657 * 13 12 10 16 16 N 1.47018 * 107.40412 * 219.52320 * 15 13 12 17 17 C 1.36936 * 125.64999 * 178.82784 * 16 15 13 18 18 H 1.08004 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00358 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46977 * 60.00100 * 21 19 17 23 23 H 1.48497 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46946 * 300.00062 * 21 19 17 25 25 C 1.47426 * 108.70517 * 358.86539 * 16 15 13 26 26 C 1.54914 * 104.82992 * 24.12623 * 25 16 15 27 27 H 1.09000 * 111.00339 * 81.07133 * 26 25 16 28 28 O 1.42900 * 111.00244 * 204.91582 * 26 25 16 29 29 N 1.31131 * 106.89785 * 359.54153 * 6 5 4 30 30 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47009 * 300.00417 * 1 2 3 32 32 H 1.08994 * 109.47039 * 59.99919 * 1 2 3 33 33 H 1.08997 * 109.47009 * 239.99583 * 2 1 3 34 34 H 1.09007 * 109.46696 * 119.99933 * 2 1 3 35 35 H 1.08998 * 109.46867 * 149.69246 * 7 6 5 36 36 H 1.08993 * 109.47048 * 29.69103 * 7 6 5 37 37 H 1.08998 * 109.46829 * 60.00535 * 8 7 6 38 38 H 1.09000 * 109.47560 * 300.00520 * 8 7 6 39 39 H 1.08998 * 109.47063 * 60.00472 * 9 8 7 40 40 H 1.09000 * 109.47222 * 300.00520 * 9 8 7 41 41 H 0.96997 * 119.99763 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.88192 * 100.02760 * 15 13 12 43 43 H 1.09000 * 109.88128 * 339.01612 * 15 13 12 44 44 H 0.96996 * 119.99954 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.36956 * 142.96999 * 25 16 15 46 46 H 1.09003 * 110.36599 * 265.28903 * 25 16 15 47 47 H 0.96701 * 114.00208 * 298.55206 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2884 2.1460 -1.0475 5 8 2.6713 3.2472 -0.7124 6 6 2.7063 3.3281 0.6212 7 6 3.1285 4.5228 1.4370 8 6 4.6315 4.4465 1.7128 9 6 5.0601 5.6591 2.5416 10 6 6.5406 5.5844 2.8127 11 8 7.1892 4.6531 2.3848 12 7 7.1441 6.5528 3.5299 13 6 8.5834 6.4804 3.7930 14 1 9.1139 6.0726 2.9325 15 6 8.8660 5.6409 5.0567 16 7 9.9537 6.3037 5.7909 17 6 10.4843 5.8844 6.9816 18 1 10.1016 4.9948 7.4599 19 6 11.5133 6.6031 7.5745 20 7 11.9786 7.6880 6.9924 21 14 12.2366 6.0314 9.1991 22 1 12.7991 4.6666 9.0375 23 1 13.3140 6.9641 9.6167 24 1 11.1721 6.0088 10.2342 25 6 10.3779 7.4952 5.0334 26 6 9.1471 7.8776 4.1739 27 1 8.4221 8.4429 4.7595 28 8 9.5419 8.6063 3.0098 29 7 2.2977 2.1712 1.0841 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.5855 4.5276 2.3821 36 1 2.9062 5.4362 0.8855 37 1 5.1745 4.4417 0.7677 38 1 4.8539 3.5330 2.2643 39 1 4.5171 5.6636 3.4867 40 1 4.8377 6.5729 1.9905 41 1 6.6254 7.2977 3.8718 42 1 9.1707 4.6337 4.7722 43 1 7.9723 5.5957 5.6792 44 1 12.6978 8.1901 7.4064 45 1 10.6321 8.3073 5.7146 46 1 11.2275 7.2555 4.3939 47 1 9.9866 9.4433 3.2016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198646281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:29 Heat of formation + Delta-G solvation = -33.363366 kcal Electronic energy + Delta-G solvation = -28393.388813 eV Core-core repulsion = 24192.750945 eV Total energy + Delta-G solvation = -4200.637868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.63962 -41.03047 -39.41512 -37.43119 -36.67913 -36.51132 -35.51348 -34.21148 -33.59844 -32.41837 -30.45747 -29.38911 -28.38282 -26.36923 -26.09832 -24.66931 -23.47186 -22.48021 -21.89324 -21.67762 -21.17942 -19.13036 -19.09924 -18.58151 -18.35762 -17.82819 -17.31367 -16.79124 -16.60519 -16.20993 -15.79048 -15.67083 -15.34708 -15.10524 -14.93862 -14.76794 -14.55156 -14.04388 -13.96973 -13.87719 -13.65450 -13.52856 -13.20022 -13.05811 -12.91556 -12.71186 -12.70306 -12.67793 -12.58131 -12.29404 -12.26018 -12.09996 -11.98231 -11.92792 -11.68905 -11.40110 -11.14595 -10.94486 -10.78257 -10.72442 -10.11842 -8.97748 -7.82499 -5.28700 0.10822 1.16084 1.47257 1.50296 1.56598 1.72186 1.82529 2.19200 2.47449 2.65227 3.02713 3.08772 3.28942 3.63473 3.68294 3.78257 3.90160 4.03811 4.07964 4.10113 4.17837 4.20445 4.22564 4.30016 4.44375 4.55537 4.59776 4.62758 4.69838 4.76698 4.84414 4.85425 4.88204 4.94499 5.01489 5.02444 5.16271 5.21569 5.31446 5.37676 5.43483 5.52822 5.67400 6.20987 6.63457 6.86943 7.04524 7.13113 7.35205 7.68739 8.30848 9.18951 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.001786 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.367286 B =15677.025015 C =16730.255910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C 0.163 3.837 4 N -0.412 5.412 5 O 0.067 5.933 6 C 0.192 3.808 7 C -0.020 4.020 8 C -0.098 4.098 9 C -0.123 4.123 10 C 0.503 3.497 11 O -0.595 6.595 12 N -0.703 5.703 13 C 0.155 3.845 14 H 0.070 0.930 15 C 0.132 3.868 16 N -0.619 5.619 17 C -0.246 4.246 18 H 0.080 0.920 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.983 3.017 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.131 3.869 26 C 0.093 3.907 27 H 0.090 0.910 28 O -0.568 6.568 29 N -0.506 5.506 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.419 0.581 42 H 0.008 0.992 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.092 0.908 46 H -0.011 1.011 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.759 -2.187 -11.577 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.110 4.110 4 N -0.123 5.123 5 O 0.011 5.989 6 C -0.028 4.028 7 C -0.058 4.058 8 C -0.138 4.138 9 C -0.162 4.162 10 C 0.292 3.708 11 O -0.475 6.475 12 N -0.356 5.356 13 C 0.049 3.951 14 H 0.088 0.912 15 C 0.005 3.995 16 N -0.347 5.347 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.811 3.189 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.198 1.198 25 C 0.005 3.995 26 C 0.033 3.967 27 H 0.108 0.892 28 O -0.376 6.376 29 N -0.240 5.240 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.257 0.743 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.007 0.993 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -24.640 -3.867 -12.559 27.925 hybrid contribution 1.373 0.273 1.142 1.806 sum -23.267 -3.594 -11.417 26.165 Atomic orbital electron populations 1.21691 0.92085 1.04073 1.01918 1.20143 0.97752 0.84165 1.05517 1.26515 0.99542 1.01642 0.83281 1.74613 1.19338 0.93511 1.24825 1.85254 1.61273 1.26765 1.25602 1.29580 0.93768 0.97524 0.81883 1.20547 0.95948 0.89976 0.99344 1.21214 0.93416 0.98462 1.00687 1.21664 0.88575 1.01433 1.04536 1.21685 0.92026 0.80757 0.76300 1.90721 1.68261 1.35350 1.53151 1.45804 1.07754 1.26989 1.55016 1.21501 0.82355 0.95009 0.96273 0.91222 1.21680 0.91533 0.94485 0.91814 1.44538 1.39860 1.28188 1.22089 1.19400 1.14030 1.07985 0.96054 0.90262 1.25623 0.99101 0.97987 1.02616 1.69940 1.30105 1.18992 1.40412 0.85092 0.77743 0.76987 0.79113 1.21016 1.21550 1.19847 1.22415 0.92331 0.91700 0.93034 1.23295 0.96354 0.91004 0.86077 0.89196 1.86372 1.80705 1.39023 1.31503 1.71928 1.19361 1.02857 1.29867 0.88813 0.92604 0.93044 0.88274 0.87825 0.84636 0.84017 0.92135 0.92923 0.84923 0.84303 0.74296 0.97407 0.93951 0.93948 0.89042 0.99298 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.90 71.98 0.71 -0.82 16 2 C -0.04 -0.53 6.56 29.85 0.20 -0.33 16 3 C 0.16 3.49 7.47 138.46 1.03 4.53 16 4 N -0.41 -9.77 12.16 -60.28 -0.73 -10.50 16 5 O 0.07 1.41 11.31 74.78 0.85 2.26 16 6 C 0.19 3.42 7.77 88.38 0.69 4.10 16 7 C -0.02 -0.17 5.84 29.85 0.17 0.01 16 8 C -0.10 -1.46 4.49 30.60 0.14 -1.33 16 9 C -0.12 -1.42 5.70 29.85 0.17 -1.25 16 10 C 0.50 12.82 7.83 87.66 0.69 13.51 16 11 O -0.59 -21.99 15.71 -3.04 -0.05 -22.04 16 12 N -0.70 -17.89 5.13 -436.51 -2.24 -20.13 16 13 C 0.16 5.64 2.98 46.27 0.14 5.77 16 14 H 0.07 2.96 7.70 -2.39 -0.02 2.94 16 15 C 0.13 5.72 6.98 86.73 0.61 6.32 16 16 N -0.62 -31.88 3.39 -691.97 -2.35 -34.23 16 17 C -0.25 -13.74 10.27 84.03 0.86 -12.88 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 20 N -0.95 -54.20 10.09 21.65 0.22 -53.98 16 21 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.13 6.24 5.62 86.86 0.49 6.73 16 26 C 0.09 3.26 4.05 32.08 0.13 3.39 16 27 H 0.09 2.71 8.01 -2.39 -0.02 2.69 16 28 O -0.57 -17.83 13.48 -148.98 -2.01 -19.84 16 29 N -0.51 -11.02 11.55 -303.16 -3.50 -14.52 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.14 0.60 8.14 -2.39 -0.02 0.59 16 41 H 0.42 7.25 8.53 -92.71 -0.79 6.46 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 44 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.09 4.76 5.87 -2.39 -0.01 4.74 16 46 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.40 9.25 9.11 -74.06 -0.67 8.57 16 Total: -1.00 -82.21 393.79 -1.76 -83.97 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.46 Total: 17.39 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 6.49 Total: 24.87 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -8.61 Total: -133.36 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.21 Total: -39.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -82.21 -1.76 -83.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198646281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.607 kcal (2) G-P(sol) polarization free energy of solvation -82.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds