Wall clock time and date at job start Tue Mar 31 2020 20:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46799 * 2 1 4 4 N 1.29942 * 126.28978 * 269.97743 * 3 2 1 5 5 O 1.21306 * 110.25137 * 180.02562 * 4 3 2 6 6 C 1.33645 * 109.81154 * 359.97438 * 5 4 3 7 7 C 1.50691 * 126.55129 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47470 * 269.95790 * 7 6 5 9 9 C 1.42897 * 114.00264 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46983 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00265 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00112 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.62787 * 0.02562 * 12 10 9 14 14 C 1.53189 * 108.77893 * 233.58329 * 13 12 10 15 15 C 1.53039 * 109.31248 * 305.36832 * 14 13 12 16 16 C 1.53043 * 109.53860 * 61.36102 * 15 14 13 17 17 H 1.09004 * 109.49745 * 58.61702 * 16 15 14 18 18 N 1.46505 * 109.49825 * 178.68280 * 16 15 14 19 19 C 1.36942 * 119.99783 * 205.00244 * 18 16 15 20 20 H 1.07993 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99672 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99913 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47238 * 89.99990 * 23 21 19 25 25 H 1.48502 * 109.47296 * 209.99640 * 23 21 19 26 26 H 1.48501 * 109.47239 * 329.99846 * 23 21 19 27 27 C 1.46928 * 120.63405 * 179.72135 * 12 10 9 28 28 N 1.31138 * 106.89453 * 0.02562 * 6 5 4 29 29 H 1.08996 * 109.47215 * 59.99372 * 1 2 3 30 30 H 1.08998 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46703 * 299.99318 * 1 2 3 32 32 H 1.08999 * 109.46703 * 240.00682 * 2 1 3 33 33 H 1.09000 * 109.47241 * 120.00130 * 2 1 3 34 34 H 1.09001 * 109.47255 * 29.96194 * 7 6 5 35 35 H 1.09000 * 109.47143 * 149.95492 * 7 6 5 36 36 H 1.08991 * 109.47072 * 300.00292 * 9 8 7 37 37 H 1.09004 * 109.46963 * 60.00327 * 9 8 7 38 38 H 1.08998 * 109.58710 * 353.37681 * 13 12 10 39 39 H 1.09005 * 109.58358 * 113.80000 * 13 12 10 40 40 H 1.09002 * 109.49175 * 65.31469 * 14 13 12 41 41 H 1.09000 * 109.50036 * 185.38079 * 14 13 12 42 42 H 1.09004 * 109.45895 * 181.37830 * 15 14 13 43 43 H 1.08999 * 109.46133 * 301.35275 * 15 14 13 44 44 H 0.96992 * 119.99729 * 24.99966 * 18 16 15 45 45 H 0.97002 * 120.00156 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.58557 * 246.20451 * 27 12 10 47 47 H 1.08997 * 109.58276 * 6.62654 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2890 2.1458 -1.0474 5 8 2.6779 3.2449 -0.7122 6 6 2.7066 3.3280 0.6213 7 6 3.1285 4.5227 1.4371 8 8 4.5319 4.4508 1.6966 9 6 5.0372 5.5428 2.4675 10 6 6.5184 5.3647 2.6801 11 8 7.0856 4.3980 2.2167 12 7 7.2129 6.2796 3.3852 13 6 6.5396 7.4555 3.9532 14 6 7.2748 8.7167 3.4891 15 6 8.7564 8.6027 3.8553 16 6 9.3688 7.3959 3.1406 17 1 9.2488 7.5115 2.0634 18 7 10.7942 7.3059 3.4670 19 6 11.6551 6.6771 2.6074 20 1 11.2833 6.2480 1.6887 21 6 13.0055 6.5914 2.9168 22 7 13.4587 7.1149 4.0362 23 14 14.1797 5.7332 1.7447 24 1 14.7191 6.7192 0.7741 25 1 15.2988 5.1342 2.5154 26 1 13.4546 4.6637 1.0126 27 6 8.6563 6.1166 3.6061 28 7 2.2974 2.1713 1.0842 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.9074 5.4362 0.8850 35 1 2.5842 4.5283 2.3815 36 1 4.8558 6.4771 1.9363 37 1 4.5326 5.5700 3.4333 38 1 5.5062 7.4870 3.6082 39 1 6.5621 7.3992 5.0416 40 1 7.1740 8.8196 2.4086 41 1 6.8445 9.5900 3.9794 42 1 9.2772 9.5095 3.5480 43 1 8.8552 8.4747 4.9332 44 1 11.1281 7.6918 4.2918 45 1 14.4023 7.0547 4.2526 46 1 8.8474 5.9535 4.6668 47 1 9.0198 5.2644 3.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210593722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:05 Heat of formation + Delta-G solvation = 5.076726 kcal Electronic energy + Delta-G solvation = -28718.192312 eV Core-core repulsion = 24519.221331 eV Total energy + Delta-G solvation = -4198.970980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.93152 -40.12447 -38.39825 -37.09664 -36.69984 -34.53076 -34.22184 -32.38971 -32.05584 -31.23724 -29.59656 -28.25394 -27.02559 -25.48487 -24.72725 -23.92148 -23.54381 -21.94449 -21.54760 -20.41748 -18.99771 -18.58572 -17.92507 -17.40502 -17.10816 -16.81904 -16.58286 -15.90232 -15.39954 -15.12272 -14.94945 -14.60271 -14.42215 -14.23101 -13.94888 -13.53535 -13.43566 -13.42098 -13.14132 -12.84973 -12.54642 -12.41196 -12.39945 -12.19322 -12.17184 -11.76180 -11.70202 -11.39176 -11.33748 -11.08791 -10.85517 -10.70356 -10.61889 -10.36258 -10.29696 -10.21348 -9.85940 -9.76555 -9.54460 -9.09007 -8.40130 -7.01352 -5.79602 -3.09481 0.66651 1.78035 2.26401 2.69727 2.82266 3.19444 3.45021 3.50774 3.53576 3.61020 3.78839 4.32418 4.48283 4.54037 4.57323 4.66749 4.70285 4.71216 4.75871 4.83725 4.89133 4.95752 5.02250 5.17877 5.32710 5.38163 5.45439 5.46866 5.47802 5.54066 5.60782 5.70325 5.74924 5.86426 5.97949 6.11835 6.16446 6.29599 6.37748 6.45768 6.69921 6.79591 6.97561 7.56005 7.71716 7.80336 8.31448 8.38777 9.50569 10.03901 10.39016 11.42498 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002062 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.313311 B =13575.420161 C =14983.787499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.170 3.830 4 N -0.378 5.378 5 O 0.090 5.910 6 C 0.186 3.814 7 C 0.156 3.844 8 O -0.355 6.355 9 C 0.048 3.952 10 C 0.510 3.490 11 O -0.518 6.518 12 N -0.605 5.605 13 C 0.106 3.894 14 C -0.130 4.130 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.052 0.948 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.093 3.907 28 N -0.460 5.460 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.419 -2.081 -1.949 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.083 5.083 5 O 0.029 5.971 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.272 6.272 9 C -0.032 4.032 10 C 0.295 3.705 11 O -0.393 6.393 12 N -0.341 5.341 13 C -0.018 4.018 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.031 4.031 28 N -0.195 5.195 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -29.052 -3.443 -2.918 29.401 hybrid contribution 0.801 0.061 -0.108 0.810 sum -28.252 -3.382 -3.026 28.614 Atomic orbital electron populations 1.21737 0.93190 1.02927 1.02621 1.19971 0.96821 0.85478 1.05009 1.25932 1.00330 1.00670 0.83308 1.74654 1.17102 0.92698 1.23892 1.85314 1.60109 1.27143 1.24534 1.28144 0.96792 0.96412 0.82202 1.20578 0.84331 0.90041 0.97319 1.88089 1.19862 1.45599 1.73633 1.22386 0.93897 0.90256 0.96664 1.20010 0.87971 0.83278 0.79215 1.90766 1.70481 1.29684 1.48331 1.48245 1.10308 1.22576 1.52987 1.21777 0.95750 0.85482 0.98754 1.21889 0.96635 0.96591 1.01804 1.21829 0.94029 0.99832 1.00801 1.20594 0.85349 0.90851 0.97512 0.93020 1.42377 1.00593 1.67818 1.25025 1.19276 0.88782 1.28738 1.00653 0.91011 1.24746 0.97055 1.01257 0.97581 1.69658 1.14100 1.50086 1.24131 0.86190 0.80819 0.79239 0.80005 1.21665 1.21722 1.20568 1.22938 0.76002 1.02786 1.01336 1.71887 1.16863 1.01278 1.29483 0.92337 0.90926 0.91960 0.88905 0.88358 0.88829 0.88039 0.89530 0.89666 0.90566 0.91078 0.91494 0.90884 0.91333 0.91974 0.78058 0.93462 0.91882 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.03 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C 0.17 1.91 7.47 -156.38 -1.17 0.75 16 4 N -0.38 -4.68 12.16 30.90 0.38 -4.30 16 5 O 0.09 1.05 11.31 18.09 0.20 1.26 16 6 C 0.19 1.98 8.14 -13.05 -0.11 1.87 16 7 C 0.16 1.14 6.56 36.00 0.24 1.38 16 8 O -0.35 -4.20 9.86 -55.14 -0.54 -4.74 16 9 C 0.05 0.45 4.76 36.00 0.17 0.62 16 10 C 0.51 7.75 7.77 -10.99 -0.09 7.67 16 11 O -0.52 -10.80 15.91 -14.35 -0.23 -11.03 16 12 N -0.61 -8.60 2.97 -172.48 -0.51 -9.11 16 13 C 0.11 1.00 6.34 -3.71 -0.02 0.97 16 14 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 15 C -0.13 -1.85 5.35 -26.69 -0.14 -1.99 16 16 C 0.17 3.23 2.94 -67.56 -0.20 3.03 16 17 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 18 N -0.72 -17.57 5.12 -53.07 -0.27 -17.84 16 19 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 23 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.09 1.72 6.05 -3.47 -0.02 1.70 16 28 N -0.46 -5.47 11.55 -9.87 -0.11 -5.59 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.54 7.69 -51.93 -0.40 0.14 16 37 H 0.09 0.52 7.94 -51.93 -0.41 0.11 16 38 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.39 9.90 7.80 -40.82 -0.32 9.58 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -37.01 392.60 -8.30 -45.30 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.26 Total: 3.29 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.56 Total: 6.25 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.20 Total: -64.00 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.57 Total: -14.51 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.01 -8.30 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210593722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.382 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds