Wall clock time and date at job start Tue Mar 31 2020 20:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46799 * 2 1 4 4 N 1.29942 * 126.28978 * 269.97743 * 3 2 1 5 5 O 1.21306 * 110.25137 * 180.02562 * 4 3 2 6 6 C 1.33645 * 109.81154 * 359.97438 * 5 4 3 7 7 C 1.50691 * 126.55129 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47470 * 269.95790 * 7 6 5 9 9 C 1.42897 * 114.00264 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46983 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00265 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00112 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.62787 * 0.02562 * 12 10 9 14 14 C 1.53189 * 108.77893 * 233.58329 * 13 12 10 15 15 C 1.53039 * 109.31248 * 305.36832 * 14 13 12 16 16 C 1.53043 * 109.53860 * 61.36102 * 15 14 13 17 17 H 1.09004 * 109.49745 * 58.61702 * 16 15 14 18 18 N 1.46505 * 109.49825 * 178.68280 * 16 15 14 19 19 C 1.36942 * 119.99783 * 205.00244 * 18 16 15 20 20 H 1.07993 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99672 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99913 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47238 * 89.99990 * 23 21 19 25 25 H 1.48502 * 109.47296 * 209.99640 * 23 21 19 26 26 H 1.48501 * 109.47239 * 329.99846 * 23 21 19 27 27 C 1.46928 * 120.63405 * 179.72135 * 12 10 9 28 28 N 1.31138 * 106.89453 * 0.02562 * 6 5 4 29 29 H 1.08996 * 109.47215 * 59.99372 * 1 2 3 30 30 H 1.08998 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46703 * 299.99318 * 1 2 3 32 32 H 1.08999 * 109.46703 * 240.00682 * 2 1 3 33 33 H 1.09000 * 109.47241 * 120.00130 * 2 1 3 34 34 H 1.09001 * 109.47255 * 29.96194 * 7 6 5 35 35 H 1.09000 * 109.47143 * 149.95492 * 7 6 5 36 36 H 1.08991 * 109.47072 * 300.00292 * 9 8 7 37 37 H 1.09004 * 109.46963 * 60.00327 * 9 8 7 38 38 H 1.08998 * 109.58710 * 353.37681 * 13 12 10 39 39 H 1.09005 * 109.58358 * 113.80000 * 13 12 10 40 40 H 1.09002 * 109.49175 * 65.31469 * 14 13 12 41 41 H 1.09000 * 109.50036 * 185.38079 * 14 13 12 42 42 H 1.09004 * 109.45895 * 181.37830 * 15 14 13 43 43 H 1.08999 * 109.46133 * 301.35275 * 15 14 13 44 44 H 0.96992 * 119.99729 * 24.99966 * 18 16 15 45 45 H 0.97002 * 120.00156 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.58557 * 246.20451 * 27 12 10 47 47 H 1.08997 * 109.58276 * 6.62654 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2890 2.1458 -1.0474 5 8 2.6779 3.2449 -0.7122 6 6 2.7066 3.3280 0.6213 7 6 3.1285 4.5227 1.4371 8 8 4.5319 4.4508 1.6966 9 6 5.0372 5.5428 2.4675 10 6 6.5184 5.3647 2.6801 11 8 7.0856 4.3980 2.2167 12 7 7.2129 6.2796 3.3852 13 6 6.5396 7.4555 3.9532 14 6 7.2748 8.7167 3.4891 15 6 8.7564 8.6027 3.8553 16 6 9.3688 7.3959 3.1406 17 1 9.2488 7.5115 2.0634 18 7 10.7942 7.3059 3.4670 19 6 11.6551 6.6771 2.6074 20 1 11.2833 6.2480 1.6887 21 6 13.0055 6.5914 2.9168 22 7 13.4587 7.1149 4.0362 23 14 14.1797 5.7332 1.7447 24 1 14.7191 6.7192 0.7741 25 1 15.2988 5.1342 2.5154 26 1 13.4546 4.6637 1.0126 27 6 8.6563 6.1166 3.6061 28 7 2.2974 2.1713 1.0842 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.9074 5.4362 0.8850 35 1 2.5842 4.5283 2.3815 36 1 4.8558 6.4771 1.9363 37 1 4.5326 5.5700 3.4333 38 1 5.5062 7.4870 3.6082 39 1 6.5621 7.3992 5.0416 40 1 7.1740 8.8196 2.4086 41 1 6.8445 9.5900 3.9794 42 1 9.2772 9.5095 3.5480 43 1 8.8552 8.4747 4.9332 44 1 11.1281 7.6918 4.2918 45 1 14.4023 7.0547 4.2526 46 1 8.8474 5.9535 4.6668 47 1 9.0198 5.2644 3.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210593722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:04 Heat of formation + Delta-G solvation = -23.526993 kcal Electronic energy + Delta-G solvation = -28719.432662 eV Core-core repulsion = 24519.221331 eV Total energy + Delta-G solvation = -4200.211331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.74904 -41.24374 -39.27301 -38.32046 -37.46869 -36.21899 -34.93865 -33.95105 -32.74544 -32.69078 -30.78156 -29.47242 -27.92566 -26.15225 -25.89613 -25.73579 -24.27330 -23.21866 -22.23837 -21.76679 -20.14723 -19.40696 -19.14025 -18.76937 -18.30084 -17.65827 -17.33689 -16.97772 -16.58483 -16.26076 -16.00431 -15.64356 -15.53793 -15.39849 -15.12921 -15.05588 -14.63084 -14.15075 -14.03897 -13.94525 -13.75784 -13.62555 -13.22899 -13.06426 -13.02387 -12.90905 -12.71299 -12.51150 -12.46174 -12.36694 -12.24197 -12.03380 -12.00246 -11.85535 -11.65056 -11.32361 -11.18089 -11.11568 -10.88598 -10.74016 -9.73619 -9.01574 -8.00652 -5.29265 -0.12126 0.98464 1.42119 1.43557 1.52442 1.55327 1.59765 1.88551 2.47542 2.51962 2.89039 3.04954 3.32473 3.54050 3.79200 3.79880 4.03576 4.09390 4.11367 4.12806 4.17228 4.20011 4.27207 4.28973 4.36030 4.38296 4.41663 4.42074 4.66649 4.69545 4.80686 4.84120 4.90115 4.91083 4.94519 4.98270 5.08179 5.20481 5.21251 5.40634 5.43786 5.51023 5.57025 5.84930 6.22752 6.49019 7.00109 7.20068 7.29239 8.02534 8.27033 9.21799 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002062 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.313311 B =13575.420161 C =14983.787499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C 0.164 3.836 4 N -0.403 5.403 5 O 0.077 5.923 6 C 0.185 3.815 7 C 0.154 3.846 8 O -0.401 6.401 9 C 0.057 3.943 10 C 0.496 3.504 11 O -0.592 6.592 12 N -0.603 5.603 13 C 0.098 3.902 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.166 3.834 17 H 0.031 0.969 18 N -0.730 5.730 19 C -0.245 4.245 20 H 0.063 0.937 21 C -0.067 4.067 22 N -0.962 5.962 23 Si 0.966 3.034 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.107 3.893 28 N -0.484 5.484 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.059 0.941 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.835 -0.521 -1.350 32.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.109 4.109 4 N -0.112 5.112 5 O 0.019 5.981 6 C -0.036 4.036 7 C 0.077 3.923 8 O -0.320 6.320 9 C -0.021 4.021 10 C 0.285 3.715 11 O -0.472 6.472 12 N -0.337 5.337 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.158 4.158 16 C 0.056 3.944 17 H 0.049 0.951 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.081 0.919 21 C -0.260 4.260 22 N -0.612 5.612 23 Si 0.795 3.205 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.019 4.019 28 N -0.220 5.220 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.210 0.790 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -32.543 -1.822 -2.312 32.676 hybrid contribution 1.797 -0.421 -0.282 1.867 sum -30.746 -2.243 -2.594 30.937 Atomic orbital electron populations 1.21699 0.91735 1.04203 1.02083 1.20191 0.98004 0.83752 1.05661 1.26587 0.99479 1.01786 0.82999 1.74634 1.18508 0.93281 1.24800 1.85270 1.60442 1.27057 1.25324 1.29001 0.95476 0.97124 0.81975 1.21090 0.82379 0.89972 0.98885 1.88011 1.22385 1.47111 1.74444 1.22510 0.88923 0.91197 0.99459 1.21275 0.90709 0.81932 0.77559 1.90735 1.72502 1.32760 1.51231 1.48287 1.08341 1.24235 1.52820 1.22255 0.97715 0.82489 0.99771 1.21899 0.93057 0.98754 1.02356 1.21757 0.97175 0.96557 1.00302 1.20788 0.83123 0.93467 0.96979 0.95069 1.42523 1.02691 1.67555 1.24227 1.19497 0.89615 1.27951 1.00657 0.91913 1.25457 0.98556 1.02711 0.99292 1.69780 1.14080 1.51701 1.25624 0.85255 0.78740 0.78238 0.78237 1.20904 1.21653 1.20566 1.22283 0.79571 1.00128 0.99885 1.71905 1.18004 1.02084 1.29998 0.92929 0.88726 0.92361 0.88206 0.87694 0.84682 0.84860 0.85017 0.85111 0.85175 0.89424 0.91484 0.86778 0.92259 0.91532 0.78986 0.93816 0.92280 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.90 71.98 0.71 -0.76 16 2 C -0.04 -0.55 6.56 29.85 0.20 -0.35 16 3 C 0.16 3.66 7.47 138.46 1.03 4.70 16 4 N -0.40 -10.06 12.16 -60.30 -0.73 -10.79 16 5 O 0.08 1.78 11.31 74.81 0.85 2.62 16 6 C 0.19 3.70 8.14 88.38 0.72 4.42 16 7 C 0.15 1.67 6.56 71.23 0.47 2.14 16 8 O -0.40 -8.41 9.86 -129.94 -1.28 -9.69 16 9 C 0.06 0.82 4.76 71.23 0.34 1.16 16 10 C 0.50 14.48 7.77 87.65 0.68 15.16 16 11 O -0.59 -25.77 15.91 16.02 0.25 -25.51 16 12 N -0.60 -16.13 2.97 -818.01 -2.43 -18.55 16 13 C 0.10 1.36 6.34 86.36 0.55 1.91 16 14 C -0.12 -1.98 6.08 30.67 0.19 -1.79 16 15 C -0.12 -3.32 5.35 30.62 0.16 -3.16 16 16 C 0.17 6.54 2.94 45.23 0.13 6.67 16 17 H 0.03 1.34 8.08 -2.38 -0.02 1.32 16 18 N -0.73 -37.16 5.12 -321.80 -1.65 -38.81 16 19 C -0.25 -14.20 9.93 84.03 0.83 -13.36 16 20 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 22 N -0.96 -59.09 13.06 21.65 0.28 -58.81 16 23 Si 0.97 48.11 29.55 68.60 2.03 50.14 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.11 4.09 6.05 86.52 0.52 4.61 16 28 N -0.48 -11.18 11.55 -303.18 -3.50 -14.68 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 0.72 7.69 -2.39 -0.02 0.70 16 37 H 0.13 0.71 7.94 -2.39 -0.02 0.69 16 38 H 0.13 0.50 5.93 -2.39 -0.01 0.48 16 39 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.38 20.11 7.80 -92.71 -0.72 19.38 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.04 1.97 7.00 -2.39 -0.02 1.95 16 Total: -1.00 -90.31 392.60 1.09 -89.22 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.26 Total: 17.03 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.01 Total: 17.84 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -8.03 Total: -141.65 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.18 Total: -32.58 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -90.31 1.09 -89.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210593722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.692 kcal (2) G-P(sol) polarization free energy of solvation -90.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds