Wall clock time and date at job start Tue Mar 31 2020 20:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47199 * 2 1 4 4 N 1.29949 * 126.28772 * 270.02282 * 3 2 1 5 5 O 1.21298 * 110.25447 * 179.68204 * 4 3 2 6 6 C 1.33641 * 109.80617 * 0.47070 * 5 4 3 7 7 C 1.50709 * 126.54743 * 179.80248 * 6 5 4 8 8 O 1.42906 * 109.46652 * 269.68326 * 7 6 5 9 9 C 1.42902 * 113.99541 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46861 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00100 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.64981 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64500 * 359.95253 * 12 10 9 29 29 N 1.31124 * 106.89966 * 359.53662 * 6 5 4 30 30 H 1.08998 * 109.47092 * 300.00360 * 1 2 3 31 31 H 1.08999 * 109.46923 * 60.00005 * 1 2 3 32 32 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47092 * 239.99639 * 2 1 3 34 34 H 1.09005 * 109.46874 * 119.99282 * 2 1 3 35 35 H 1.08995 * 109.47171 * 149.69042 * 7 6 5 36 36 H 1.08995 * 109.47310 * 29.68038 * 7 6 5 37 37 H 1.08996 * 109.47181 * 60.00260 * 9 8 7 38 38 H 1.09002 * 109.47258 * 300.00025 * 9 8 7 39 39 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 40 40 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 41 41 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 42 42 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 43 43 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 44 44 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 45 45 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 47 47 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2883 2.1460 -1.0475 5 8 2.6711 3.2472 -0.7124 6 6 2.7062 3.3281 0.6211 7 6 3.1283 4.5229 1.4369 8 8 4.5322 4.4517 1.6945 9 6 5.0377 5.5438 2.4651 10 6 6.5196 5.3672 2.6747 11 8 7.0869 4.4015 2.2096 12 7 7.2144 6.2824 3.3791 13 6 8.6569 6.2339 3.6588 14 6 9.0131 7.4992 4.4672 15 1 9.0241 7.2839 5.5357 16 6 10.3586 8.0699 4.0146 17 6 7.8532 8.4716 4.1150 18 1 8.0428 8.9758 3.1674 19 7 7.6365 9.4431 5.1900 20 6 6.9503 10.6011 4.9384 21 1 6.5692 10.7984 3.9473 22 6 6.7454 11.5217 5.9569 23 7 7.2102 11.2814 7.1646 24 14 5.8087 13.1010 5.6138 25 1 5.3944 13.1311 4.1881 26 1 4.6049 13.1610 6.4810 27 1 6.6830 14.2670 5.8993 28 6 6.6537 7.4982 3.9964 29 7 2.2976 2.1713 1.0840 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.5854 4.5278 2.3819 36 1 2.9060 5.4364 0.8853 37 1 4.5343 5.5704 3.4315 38 1 4.8550 6.4783 1.9345 39 1 8.8918 5.3432 4.2416 40 1 9.2157 6.2224 2.7230 41 1 10.3136 8.3068 2.9516 42 1 10.5777 8.9758 4.5798 43 1 11.1430 7.3337 4.1899 44 1 7.9790 9.2659 6.0800 45 1 7.0667 11.9245 7.8763 46 1 5.8801 7.9254 3.3584 47 1 6.2484 7.2707 4.9823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216323364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:11 Heat of formation + Delta-G solvation = 4.770304 kcal Electronic energy + Delta-G solvation = -28541.496400 eV Core-core repulsion = 24342.512132 eV Total energy + Delta-G solvation = -4198.984268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.91266 -40.03616 -38.46485 -37.27963 -36.68459 -34.20720 -34.15944 -32.66845 -32.02629 -30.82547 -29.35704 -27.64519 -27.41811 -25.47320 -25.42593 -24.03687 -23.52050 -21.67618 -21.49695 -20.02601 -19.37270 -18.54824 -17.88848 -17.32459 -17.20972 -16.79560 -16.50098 -15.90056 -15.71138 -15.25398 -14.90274 -14.61528 -14.36096 -14.11270 -13.66524 -13.45231 -13.19858 -13.18538 -13.07371 -12.89345 -12.76125 -12.40257 -12.27545 -12.17927 -11.93090 -11.73286 -11.72644 -11.68399 -11.31573 -11.18692 -11.08283 -10.82325 -10.67864 -10.34676 -10.30706 -10.21670 -9.99722 -9.88307 -9.70481 -9.10575 -8.45462 -7.17404 -5.93267 -3.24538 0.68909 1.80090 2.27877 2.67022 2.80766 3.21739 3.33070 3.39301 3.41624 3.63415 3.86598 4.37630 4.45109 4.53770 4.61277 4.70248 4.74706 4.80032 4.90965 4.95508 4.98221 5.01193 5.05946 5.16579 5.33356 5.40034 5.46162 5.48263 5.56080 5.62887 5.66676 5.71770 5.76592 5.84800 5.93839 6.12412 6.16144 6.23372 6.35075 6.38574 6.50596 6.58795 6.78474 7.55448 7.64456 7.82214 8.22597 8.25550 9.36314 9.89505 10.24336 11.28517 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002024 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.621031 B =13827.997315 C =15221.525427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.170 3.830 4 N -0.379 5.379 5 O 0.089 5.911 6 C 0.188 3.812 7 C 0.155 3.845 8 O -0.357 6.357 9 C 0.051 3.949 10 C 0.528 3.472 11 O -0.532 6.532 12 N -0.612 5.612 13 C 0.119 3.881 14 C -0.113 4.113 15 H 0.085 0.915 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.066 0.934 19 N -0.710 5.710 20 C -0.250 4.250 21 H 0.073 0.927 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.068 3.932 29 N -0.460 5.460 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -15.898 -10.909 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.103 4.103 4 N -0.085 5.085 5 O 0.028 5.972 6 C -0.033 4.033 7 C 0.076 3.924 8 O -0.275 6.275 9 C -0.029 4.029 10 C 0.315 3.685 11 O -0.409 6.409 12 N -0.347 5.347 13 C -0.004 4.004 14 C -0.133 4.133 15 H 0.104 0.896 16 C -0.192 4.192 17 C 0.065 3.935 18 H 0.084 0.916 19 N -0.350 5.350 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.058 4.058 29 N -0.196 5.196 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.222 0.778 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.689 -17.032 -11.826 22.483 hybrid contribution -0.576 1.248 0.407 1.433 sum -9.265 -15.785 -11.420 21.573 Atomic orbital electron populations 1.21739 0.93174 1.02920 1.02693 1.19961 0.96846 0.85487 1.04917 1.25934 1.00328 1.00680 0.83344 1.74645 1.17338 0.92605 1.23920 1.85310 1.60341 1.26937 1.24583 1.28163 0.96626 0.96368 0.82130 1.20605 0.84220 0.90024 0.97502 1.88026 1.19949 1.45743 1.73737 1.22273 0.93168 0.90259 0.97156 1.19653 0.88007 0.82260 0.78591 1.90722 1.70866 1.29930 1.49369 1.48419 1.09804 1.23875 1.52608 1.21980 0.80396 0.98427 0.99569 1.22527 0.96530 0.94131 1.00093 0.89637 1.21657 0.95133 1.01093 1.01290 1.21415 0.89769 0.88546 0.93783 0.91574 1.42306 1.66001 1.18446 1.08277 1.19265 1.27809 0.95366 0.95607 0.90895 1.24770 1.01081 0.98938 0.95612 1.69660 1.50155 1.36633 1.01024 0.86130 0.79229 0.83435 0.77406 1.20452 1.21765 1.21766 1.23620 1.00147 0.84314 0.97730 1.71891 1.16827 1.01378 1.29454 0.91913 0.92320 0.90933 0.88959 0.88398 0.87852 0.88673 0.89262 0.89230 0.91852 0.91494 0.92783 0.91373 0.93122 0.77798 0.93328 0.91166 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.53 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.17 1.93 7.47 -156.38 -1.17 0.76 16 4 N -0.38 -4.72 12.16 30.90 0.38 -4.35 16 5 O 0.09 1.06 11.31 18.11 0.20 1.27 16 6 C 0.19 2.11 8.14 -13.06 -0.11 2.00 16 7 C 0.16 1.31 6.56 36.01 0.24 1.55 16 8 O -0.36 -4.47 9.86 -55.14 -0.54 -5.01 16 9 C 0.05 0.57 5.42 36.01 0.20 0.76 16 10 C 0.53 8.09 7.93 -10.98 -0.09 8.00 16 11 O -0.53 -10.27 16.83 -14.35 -0.24 -10.51 16 12 N -0.61 -8.99 3.33 -170.50 -0.57 -9.55 16 13 C 0.12 1.69 6.46 -3.07 -0.02 1.67 16 14 C -0.11 -1.65 3.19 -88.65 -0.28 -1.93 16 15 H 0.09 1.28 8.00 -51.93 -0.42 0.87 16 16 C -0.13 -1.79 9.14 37.15 0.34 -1.45 16 17 C 0.18 3.03 3.14 -65.63 -0.21 2.83 16 18 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 19 N -0.71 -15.55 5.28 -51.20 -0.27 -15.82 16 20 C -0.25 -6.19 9.98 -15.06 -0.15 -6.34 16 21 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -25.93 13.06 55.49 0.72 -25.21 16 24 Si 0.91 20.74 29.55 -169.99 -5.02 15.71 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.07 1.02 6.39 -2.51 -0.02 1.00 16 29 N -0.46 -5.65 11.55 -9.87 -0.11 -5.76 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 41 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.39 9.15 7.72 -40.82 -0.31 8.84 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -32.97 398.87 -8.01 -40.98 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.39 Total: 4.64 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.18 Total: 7.61 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.15 Total: -60.69 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.58 Total: -14.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.97 -8.01 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216323364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.753 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds