Wall clock time and date at job start Tue Mar 31 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47199 * 2 1 4 4 N 1.29949 * 126.28772 * 270.02282 * 3 2 1 5 5 O 1.21298 * 110.25447 * 179.68204 * 4 3 2 6 6 C 1.33641 * 109.80617 * 0.47070 * 5 4 3 7 7 C 1.50709 * 126.54743 * 179.80248 * 6 5 4 8 8 O 1.42906 * 109.46652 * 269.68326 * 7 6 5 9 9 C 1.42902 * 113.99541 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46861 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00100 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.64981 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64500 * 359.95253 * 12 10 9 29 29 N 1.31124 * 106.89966 * 359.53662 * 6 5 4 30 30 H 1.08998 * 109.47092 * 300.00360 * 1 2 3 31 31 H 1.08999 * 109.46923 * 60.00005 * 1 2 3 32 32 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47092 * 239.99639 * 2 1 3 34 34 H 1.09005 * 109.46874 * 119.99282 * 2 1 3 35 35 H 1.08995 * 109.47171 * 149.69042 * 7 6 5 36 36 H 1.08995 * 109.47310 * 29.68038 * 7 6 5 37 37 H 1.08996 * 109.47181 * 60.00260 * 9 8 7 38 38 H 1.09002 * 109.47258 * 300.00025 * 9 8 7 39 39 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 40 40 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 41 41 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 42 42 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 43 43 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 44 44 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 45 45 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 47 47 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2883 2.1460 -1.0475 5 8 2.6711 3.2472 -0.7124 6 6 2.7062 3.3281 0.6211 7 6 3.1283 4.5229 1.4369 8 8 4.5322 4.4517 1.6945 9 6 5.0377 5.5438 2.4651 10 6 6.5196 5.3672 2.6747 11 8 7.0869 4.4015 2.2096 12 7 7.2144 6.2824 3.3791 13 6 8.6569 6.2339 3.6588 14 6 9.0131 7.4992 4.4672 15 1 9.0241 7.2839 5.5357 16 6 10.3586 8.0699 4.0146 17 6 7.8532 8.4716 4.1150 18 1 8.0428 8.9758 3.1674 19 7 7.6365 9.4431 5.1900 20 6 6.9503 10.6011 4.9384 21 1 6.5692 10.7984 3.9473 22 6 6.7454 11.5217 5.9569 23 7 7.2102 11.2814 7.1646 24 14 5.8087 13.1010 5.6138 25 1 5.3944 13.1311 4.1881 26 1 4.6049 13.1610 6.4810 27 1 6.6830 14.2670 5.8993 28 6 6.6537 7.4982 3.9964 29 7 2.2976 2.1713 1.0840 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.5854 4.5278 2.3819 36 1 2.9060 5.4364 0.8853 37 1 4.5343 5.5704 3.4315 38 1 4.8550 6.4783 1.9345 39 1 8.8918 5.3432 4.2416 40 1 9.2157 6.2224 2.7230 41 1 10.3136 8.3068 2.9516 42 1 10.5777 8.9758 4.5798 43 1 11.1430 7.3337 4.1899 44 1 7.9790 9.2659 6.0800 45 1 7.0667 11.9245 7.8763 46 1 5.8801 7.9254 3.3584 47 1 6.2484 7.2707 4.9823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216323364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:10 Heat of formation + Delta-G solvation = -18.269134 kcal Electronic energy + Delta-G solvation = -28542.495465 eV Core-core repulsion = 24342.512132 eV Total energy + Delta-G solvation = -4199.983333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.76206 -41.21386 -39.46158 -38.45546 -37.48026 -35.82948 -34.95367 -33.99845 -32.74661 -32.48468 -30.25290 -29.08454 -28.33414 -26.48363 -26.15322 -25.76816 -24.28596 -23.02711 -22.24186 -21.33785 -20.51473 -19.41344 -19.05686 -18.76837 -18.23668 -17.81934 -17.39851 -17.03092 -16.76980 -16.29901 -16.04006 -15.60602 -15.43839 -15.27901 -14.98206 -14.53217 -14.46247 -14.29680 -14.12429 -13.96687 -13.83680 -13.33478 -13.18291 -13.04854 -13.03202 -12.85374 -12.82853 -12.71688 -12.50786 -12.37540 -12.17403 -12.07824 -12.03328 -11.95525 -11.66726 -11.34785 -11.20533 -11.00780 -10.95459 -10.83800 -9.70447 -8.99509 -7.89842 -5.19073 -0.14950 0.96956 1.47985 1.51428 1.53487 1.55654 1.63691 1.82198 2.45526 2.60506 2.86971 3.00367 3.41086 3.42830 3.72116 3.81170 3.82475 3.97260 4.06195 4.12808 4.18299 4.19782 4.20231 4.22322 4.30368 4.39080 4.43573 4.50539 4.60933 4.68905 4.70965 4.82730 4.89794 4.90926 4.93088 4.98300 5.09604 5.17222 5.19364 5.21391 5.35906 5.48773 5.61600 5.75292 6.30923 6.46452 6.98307 7.07331 7.39376 8.11033 8.34677 9.33120 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002024 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.621031 B =13827.997315 C =15221.525427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C 0.166 3.834 4 N -0.401 5.401 5 O 0.078 5.922 6 C 0.188 3.812 7 C 0.152 3.848 8 O -0.391 6.391 9 C 0.055 3.945 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.609 5.609 13 C 0.119 3.881 14 C -0.103 4.103 15 H 0.080 0.920 16 C -0.130 4.130 17 C 0.169 3.831 18 H 0.065 0.935 19 N -0.720 5.720 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.965 3.035 25 H -0.262 1.262 26 H -0.297 1.297 27 H -0.301 1.301 28 C 0.081 3.919 29 N -0.484 5.484 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.376 0.624 45 H 0.249 0.751 46 H 0.090 0.910 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -16.114 -11.963 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.107 4.107 4 N -0.110 5.110 5 O 0.020 5.980 6 C -0.033 4.033 7 C 0.075 3.925 8 O -0.310 6.310 9 C -0.023 4.023 10 C 0.311 3.689 11 O -0.459 6.459 12 N -0.344 5.344 13 C -0.003 4.003 14 C -0.123 4.123 15 H 0.098 0.902 16 C -0.187 4.187 17 C 0.059 3.941 18 H 0.083 0.917 19 N -0.359 5.359 20 C -0.367 4.367 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.229 1.229 28 C -0.044 4.044 29 N -0.220 5.220 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.209 0.791 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.920 -17.248 -12.928 23.728 hybrid contribution -0.141 1.221 0.682 1.406 sum -10.061 -16.027 -12.246 22.540 Atomic orbital electron populations 1.21708 0.91940 1.04225 1.01996 1.20194 0.97821 0.83647 1.05817 1.26611 0.99385 1.01818 0.82901 1.74629 1.18615 0.93069 1.24710 1.85273 1.60644 1.26940 1.25119 1.28801 0.95620 0.96891 0.82002 1.21032 0.82508 0.90197 0.98784 1.87960 1.22143 1.46656 1.74198 1.22347 0.90045 0.91062 0.98859 1.20459 0.89773 0.81255 0.77399 1.90701 1.72216 1.31726 1.51217 1.48444 1.09907 1.23701 1.52308 1.21976 0.80617 0.98083 0.99663 1.22433 0.96352 0.93610 0.99892 0.90208 1.21620 0.95049 1.00788 1.01275 1.21584 0.91767 0.88489 0.92274 0.91692 1.42409 1.65823 1.18849 1.08849 1.19651 1.25857 0.95631 0.95561 0.89874 1.25466 1.03090 1.01971 0.95741 1.69802 1.52566 1.37506 1.01836 0.85190 0.77522 0.79882 0.77837 1.18656 1.22439 1.22927 1.23324 0.99263 0.83764 0.98065 1.71912 1.17856 1.02117 1.30095 0.92601 0.92954 0.88616 0.87904 0.87592 0.85478 0.85068 0.86750 0.86141 0.91649 0.91095 0.92141 0.93186 0.91042 0.79107 0.94188 0.89141 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.04 -0.51 6.56 29.85 0.20 -0.32 16 3 C 0.17 3.68 7.47 138.46 1.03 4.72 16 4 N -0.40 -9.93 12.16 -60.32 -0.73 -10.66 16 5 O 0.08 1.83 11.31 74.85 0.85 2.67 16 6 C 0.19 3.99 8.14 88.39 0.72 4.71 16 7 C 0.15 2.17 6.56 71.24 0.47 2.63 16 8 O -0.39 -8.94 9.86 -129.94 -1.28 -10.22 16 9 C 0.06 1.06 5.42 71.24 0.39 1.45 16 10 C 0.52 15.03 7.93 87.66 0.69 15.72 16 11 O -0.58 -21.95 16.83 16.01 0.27 -21.68 16 12 N -0.61 -16.66 3.33 -811.74 -2.70 -19.36 16 13 C 0.12 3.21 6.46 86.73 0.56 3.77 16 14 C -0.10 -2.88 3.19 -9.52 -0.03 -2.91 16 15 H 0.08 2.34 8.00 -2.39 -0.02 2.32 16 16 C -0.13 -3.29 9.14 71.98 0.66 -2.63 16 17 C 0.17 5.52 3.14 46.48 0.15 5.67 16 18 H 0.07 2.16 8.03 -2.39 -0.02 2.14 16 19 N -0.72 -30.98 5.28 -315.91 -1.67 -32.65 16 20 C -0.24 -11.37 9.98 84.03 0.84 -10.53 16 21 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 22 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 23 N -0.97 -54.70 13.06 21.65 0.28 -54.42 16 24 Si 0.97 42.32 29.55 68.60 2.03 44.34 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 28 C 0.08 2.23 6.39 86.86 0.56 2.79 16 29 N -0.48 -11.54 11.55 -303.19 -3.50 -15.04 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.12 1.56 7.85 -2.39 -0.02 1.54 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.87 7.82 -2.39 -0.02 1.85 16 41 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.38 17.85 7.72 -92.71 -0.72 17.13 16 45 H 0.25 13.87 8.31 -92.72 -0.77 13.09 16 46 H 0.09 2.15 7.48 -2.39 -0.02 2.13 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -72.39 398.87 1.21 -71.17 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.27 Total: 24.77 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 7.40 Total: 21.06 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -8.32 Total: -132.12 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.17 Total: -29.22 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.39 1.21 -71.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216323364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.904 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds