Wall clock time and date at job start Tue Mar 31 2020 21:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 C 1.52994 * 109.47279 * 119.99849 * 2 1 3 5 5 C 1.53006 * 109.46972 * 60.00123 * 4 2 1 6 6 O 1.42894 * 109.47506 * 300.00260 * 4 2 1 7 7 C 1.52999 * 109.47279 * 180.02562 * 4 2 1 8 8 N 1.46496 * 109.47277 * 185.00312 * 7 4 2 9 9 C 1.34781 * 120.00327 * 179.97438 * 8 7 4 10 10 O 1.21364 * 119.99337 * 0.02562 * 9 8 7 11 11 C 1.49337 * 120.00373 * 179.97438 * 9 8 7 12 12 O 1.21389 * 119.99697 * 0.02562 * 11 9 8 13 13 N 1.34768 * 120.00105 * 179.97438 * 11 9 8 14 14 C 1.39932 * 120.00299 * 179.97438 * 13 11 9 15 15 C 1.40466 * 125.97706 * 0.02562 * 14 13 11 16 16 C 1.35222 * 107.86479 * 179.71737 * 15 14 13 17 17 N 1.34986 * 107.87618 * 0.42340 * 16 15 14 18 18 C 1.46495 * 125.97298 * 179.83859 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71954 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31275 * 125.98291 * 179.97438 * 14 13 11 28 28 H 1.08999 * 109.47223 * 299.99978 * 1 2 3 29 29 H 1.09007 * 109.47582 * 59.99755 * 1 2 3 30 30 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46584 * 240.00424 * 2 1 3 32 32 H 1.09003 * 109.47105 * 299.99994 * 3 2 1 33 33 H 1.08999 * 109.47106 * 59.99950 * 3 2 1 34 34 H 1.09001 * 109.46899 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47365 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46899 * 299.99977 * 5 4 2 37 37 H 1.08999 * 109.47106 * 60.00086 * 5 4 2 38 38 H 0.96704 * 113.99844 * 299.99700 * 6 4 2 39 39 H 1.08996 * 109.47125 * 65.00372 * 7 4 2 40 40 H 1.09006 * 109.46662 * 305.00154 * 7 4 2 41 41 H 0.97003 * 119.99851 * 0.02562 * 8 7 4 42 42 H 0.97003 * 120.00090 * 0.02562 * 13 11 9 43 43 H 1.07996 * 126.06883 * 359.97438 * 15 14 13 44 44 H 1.07998 * 126.06003 * 180.26767 * 16 15 14 45 45 H 1.09000 * 109.47378 * 4.71613 * 18 17 16 46 46 H 1.09001 * 109.47153 * 244.71734 * 18 17 16 47 47 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 8 1.5637 -0.0476 2.4160 7 6 3.5700 -0.7206 1.2495 8 7 4.0584 -1.5128 2.3809 9 6 5.3835 -1.6541 2.5826 10 8 6.1721 -1.1246 1.8272 11 6 5.8814 -2.4612 3.7362 12 8 5.0926 -2.9905 4.4920 13 7 7.2064 -2.6029 3.9376 14 6 7.6730 -3.3587 5.0188 15 6 6.8765 -4.0214 5.9672 16 6 7.7013 -4.6406 6.8417 17 7 8.9721 -4.3753 6.4717 18 6 10.1820 -4.8490 7.1482 19 6 11.0562 -5.5791 6.1613 20 1 10.7417 -5.6805 5.1331 21 6 12.2570 -6.1185 6.5714 22 7 13.0173 -6.7605 5.7114 23 14 12.8007 -5.9438 8.3499 24 1 13.5976 -4.7002 8.5039 25 1 11.6055 -5.8778 9.2287 26 1 13.6312 -7.1143 8.7310 27 7 8.9317 -3.5733 5.3239 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.8937 -2.6777 2.1389 36 1 0.4400 -2.1637 1.2492 37 1 1.8934 -2.6776 0.3592 38 1 1.8491 0.8740 2.4821 39 1 3.9329 0.3032 1.3394 40 1 3.9336 -1.1547 0.3181 41 1 3.4281 -1.9364 2.9844 42 1 7.8368 -2.1803 3.3334 43 1 5.7969 -4.0374 5.9911 44 1 7.3973 -5.2389 7.6879 45 1 9.9050 -5.5246 7.9575 46 1 10.7272 -3.9978 7.5560 47 1 13.8602 -7.1434 6.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252775892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:21 Heat of formation + Delta-G solvation = -36.985608 kcal Electronic energy + Delta-G solvation = -28726.133379 eV Core-core repulsion = 24525.338439 eV Total energy + Delta-G solvation = -4200.794940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18390 -40.47434 -39.63397 -38.37415 -35.47717 -34.51142 -34.40732 -33.29648 -31.34476 -30.90032 -29.51631 -28.81173 -27.49693 -26.56655 -24.91319 -23.03919 -22.37190 -21.29788 -20.61790 -20.16101 -19.73654 -18.55294 -17.40060 -17.07733 -16.71528 -16.58039 -16.30925 -15.86162 -15.51248 -15.39335 -15.00182 -14.86343 -14.55034 -14.16184 -14.03024 -13.56593 -13.40520 -13.20494 -12.89091 -12.80391 -12.71500 -12.60675 -12.51871 -12.44855 -12.35315 -12.18774 -11.71683 -11.64550 -11.38913 -11.18973 -10.95399 -10.90127 -10.59528 -10.42175 -10.16233 -10.02688 -9.62716 -9.57621 -9.55411 -8.78370 -8.30373 -7.65872 -6.24838 -4.27752 1.17009 1.99787 2.57961 2.97481 3.07703 3.15759 3.19952 3.24692 3.60746 3.66325 3.81346 4.02086 4.13938 4.21320 4.23738 4.35348 4.51815 4.74332 4.94080 5.02437 5.08896 5.12308 5.21394 5.27366 5.32268 5.32557 5.37336 5.40844 5.52392 5.60904 5.65801 5.80477 5.83276 5.90195 6.01473 6.23919 6.32679 6.39451 6.58674 6.84804 7.12097 7.17107 7.19571 7.35466 7.60498 7.73311 7.91104 8.29921 8.45331 8.84517 9.29512 10.87757 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034743 B = 0.001797 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.723374 B =15580.583810 C =15894.450407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.160 4.160 4 C 0.125 3.875 5 C -0.147 4.147 6 O -0.550 6.550 7 C 0.090 3.910 8 N -0.693 5.693 9 C 0.515 3.485 10 O -0.516 6.516 11 C 0.513 3.487 12 O -0.499 6.499 13 N -0.598 5.598 14 C 0.254 3.746 15 C -0.282 4.282 16 C 0.054 3.946 17 N -0.315 5.315 18 C 0.231 3.769 19 C -0.537 4.537 20 H 0.086 0.914 21 C 0.077 3.923 22 N -0.886 5.886 23 Si 0.875 3.125 24 H -0.271 1.271 25 H -0.265 1.265 26 H -0.280 1.280 27 N -0.287 5.287 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.376 0.624 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.417 0.583 42 H 0.424 0.576 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.055 0.945 46 H 0.039 0.961 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.712 14.191 -9.022 30.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.217 4.217 4 C 0.084 3.916 5 C -0.204 4.204 6 O -0.357 6.357 7 C -0.033 4.033 8 N -0.349 5.349 9 C 0.295 3.705 10 O -0.392 6.392 11 C 0.293 3.707 12 O -0.372 6.372 13 N -0.247 5.247 14 C 0.001 3.999 15 C -0.313 4.313 16 C -0.095 4.095 17 N -0.097 5.097 18 C 0.112 3.888 19 C -0.575 4.575 20 H 0.104 0.896 21 C -0.127 4.127 22 N -0.523 5.523 23 Si 0.701 3.299 24 H -0.197 1.197 25 H -0.190 1.190 26 H -0.206 1.206 27 N -0.118 5.118 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.225 0.775 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.256 0.744 42 H 0.262 0.738 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.488 13.697 -9.204 29.529 hybrid contribution 0.081 0.369 0.870 0.949 sum -24.407 14.066 -8.333 29.377 Atomic orbital electron populations 1.21805 0.93945 1.02319 1.02101 1.21708 0.97375 0.96773 0.97894 1.21982 1.01486 0.95677 1.02558 1.21465 0.90283 0.93951 0.85931 1.21860 1.02694 0.92791 1.03036 1.86589 1.76757 1.29180 1.43194 1.22276 0.94536 0.96713 0.89814 1.45648 1.06403 1.52219 1.30584 1.19894 0.83460 0.81708 0.85444 1.90798 1.55211 1.46979 1.46179 1.19901 0.82545 0.82271 0.85982 1.90713 1.54957 1.46013 1.45469 1.41995 1.06959 1.48751 1.26972 1.19023 0.92251 0.97718 0.90950 1.21544 1.01241 1.09400 0.99116 1.22576 0.84579 1.01308 1.01079 1.48700 1.06419 1.35831 1.18713 1.20103 0.80542 0.95173 0.92973 1.21101 1.03466 1.35194 0.97713 0.89595 1.24834 0.95829 0.94429 0.97643 1.69872 1.12460 1.35421 1.34577 0.86885 0.79547 0.78535 0.84939 1.19688 1.18960 1.20565 1.77473 1.15507 1.15714 1.03105 0.91866 0.92675 0.92206 0.89944 0.91849 0.92305 0.91964 0.91479 0.90820 0.90693 0.77493 0.90264 0.89879 0.74422 0.73846 0.81956 0.81122 0.92737 0.94303 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.69 37.16 0.32 -0.31 16 2 C -0.12 -0.51 2.34 -90.62 -0.21 -0.72 16 3 C -0.16 -0.60 8.53 37.16 0.32 -0.28 16 4 C 0.12 0.69 0.50 -90.62 -0.05 0.64 16 5 C -0.15 -0.84 8.26 37.16 0.31 -0.54 16 6 O -0.55 -3.43 12.21 -35.23 -0.43 -3.86 16 7 C 0.09 0.63 4.31 -4.04 -0.02 0.61 16 8 N -0.69 -6.42 5.18 -60.77 -0.31 -6.73 16 9 C 0.51 6.37 7.89 -11.64 -0.09 6.28 16 10 O -0.52 -7.34 16.48 5.48 0.09 -7.25 16 11 C 0.51 7.50 7.85 -11.64 -0.09 7.41 16 12 O -0.50 -7.83 13.60 5.46 0.07 -7.76 16 13 N -0.60 -9.79 5.43 -11.58 -0.06 -9.85 16 14 C 0.25 5.03 8.10 -154.55 -1.25 3.78 16 15 C -0.28 -5.26 9.60 -39.82 -0.38 -5.64 16 16 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 17 N -0.31 -7.01 3.67 -62.56 -0.23 -7.24 16 18 C 0.23 5.40 5.33 -5.20 -0.03 5.37 16 19 C -0.54 -15.06 9.79 -34.44 -0.34 -15.40 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 23 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 N -0.29 -6.56 12.42 31.41 0.39 -6.17 16 28 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.27 6.43 -51.93 -0.33 -0.07 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.18 6.78 -51.93 -0.35 -0.17 16 34 H 0.06 0.25 6.55 -51.93 -0.34 -0.09 16 35 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 36 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 1.45 7.33 45.56 0.33 1.78 16 39 H 0.08 0.54 6.71 -51.93 -0.35 0.19 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.42 3.73 6.46 -40.82 -0.26 3.46 16 42 H 0.42 6.40 8.29 -40.82 -0.34 6.07 16 43 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 44 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 45 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 46 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -33.90 384.24 -6.31 -40.21 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.92 Total: 9.20 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.80 Total: 4.04 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.56 Total: -55.71 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.27 Total: -18.87 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.90 -6.31 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252775892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.224 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds