Wall clock time and date at job start Tue Mar 31 2020 21:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 C 1.52994 * 109.47279 * 119.99849 * 2 1 3 5 5 C 1.53006 * 109.46972 * 60.00123 * 4 2 1 6 6 O 1.42894 * 109.47506 * 300.00260 * 4 2 1 7 7 C 1.52999 * 109.47279 * 180.02562 * 4 2 1 8 8 N 1.46496 * 109.47277 * 185.00312 * 7 4 2 9 9 C 1.34781 * 120.00327 * 179.97438 * 8 7 4 10 10 O 1.21364 * 119.99337 * 0.02562 * 9 8 7 11 11 C 1.49337 * 120.00373 * 179.97438 * 9 8 7 12 12 O 1.21389 * 119.99697 * 0.02562 * 11 9 8 13 13 N 1.34768 * 120.00105 * 179.97438 * 11 9 8 14 14 C 1.39932 * 120.00299 * 179.97438 * 13 11 9 15 15 C 1.40466 * 125.97706 * 0.02562 * 14 13 11 16 16 C 1.35222 * 107.86479 * 179.71737 * 15 14 13 17 17 N 1.34986 * 107.87618 * 0.42340 * 16 15 14 18 18 C 1.46495 * 125.97298 * 179.83859 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71954 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31275 * 125.98291 * 179.97438 * 14 13 11 28 28 H 1.08999 * 109.47223 * 299.99978 * 1 2 3 29 29 H 1.09007 * 109.47582 * 59.99755 * 1 2 3 30 30 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46584 * 240.00424 * 2 1 3 32 32 H 1.09003 * 109.47105 * 299.99994 * 3 2 1 33 33 H 1.08999 * 109.47106 * 59.99950 * 3 2 1 34 34 H 1.09001 * 109.46899 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47365 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46899 * 299.99977 * 5 4 2 37 37 H 1.08999 * 109.47106 * 60.00086 * 5 4 2 38 38 H 0.96704 * 113.99844 * 299.99700 * 6 4 2 39 39 H 1.08996 * 109.47125 * 65.00372 * 7 4 2 40 40 H 1.09006 * 109.46662 * 305.00154 * 7 4 2 41 41 H 0.97003 * 119.99851 * 0.02562 * 8 7 4 42 42 H 0.97003 * 120.00090 * 0.02562 * 13 11 9 43 43 H 1.07996 * 126.06883 * 359.97438 * 15 14 13 44 44 H 1.07998 * 126.06003 * 180.26767 * 16 15 14 45 45 H 1.09000 * 109.47378 * 4.71613 * 18 17 16 46 46 H 1.09001 * 109.47153 * 244.71734 * 18 17 16 47 47 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 8 1.5637 -0.0476 2.4160 7 6 3.5700 -0.7206 1.2495 8 7 4.0584 -1.5128 2.3809 9 6 5.3835 -1.6541 2.5826 10 8 6.1721 -1.1246 1.8272 11 6 5.8814 -2.4612 3.7362 12 8 5.0926 -2.9905 4.4920 13 7 7.2064 -2.6029 3.9376 14 6 7.6730 -3.3587 5.0188 15 6 6.8765 -4.0214 5.9672 16 6 7.7013 -4.6406 6.8417 17 7 8.9721 -4.3753 6.4717 18 6 10.1820 -4.8490 7.1482 19 6 11.0562 -5.5791 6.1613 20 1 10.7417 -5.6805 5.1331 21 6 12.2570 -6.1185 6.5714 22 7 13.0173 -6.7605 5.7114 23 14 12.8007 -5.9438 8.3499 24 1 13.5976 -4.7002 8.5039 25 1 11.6055 -5.8778 9.2287 26 1 13.6312 -7.1143 8.7310 27 7 8.9317 -3.5733 5.3239 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.8937 -2.6777 2.1389 36 1 0.4400 -2.1637 1.2492 37 1 1.8934 -2.6776 0.3592 38 1 1.8491 0.8740 2.4821 39 1 3.9329 0.3032 1.3394 40 1 3.9336 -1.1547 0.3181 41 1 3.4281 -1.9364 2.9844 42 1 7.8368 -2.1803 3.3334 43 1 5.7969 -4.0374 5.9911 44 1 7.3973 -5.2389 7.6879 45 1 9.9050 -5.5246 7.9575 46 1 10.7272 -3.9978 7.5560 47 1 13.8602 -7.1434 6.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252775892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:20 Heat of formation + Delta-G solvation = -63.956702 kcal Electronic energy + Delta-G solvation = -28727.302933 eV Core-core repulsion = 24525.338439 eV Total energy + Delta-G solvation = -4201.964494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48516 -41.63528 -40.40674 -39.42312 -36.68712 -35.63023 -35.12397 -34.81663 -33.14891 -31.42151 -31.06556 -29.51202 -29.02776 -27.27302 -25.92881 -24.37196 -23.42440 -22.51379 -21.79232 -21.22046 -20.64884 -19.65096 -19.12415 -18.33125 -17.88704 -17.60475 -17.32186 -16.95151 -16.53226 -16.42147 -16.06583 -15.93412 -15.54520 -15.26253 -15.12397 -14.84982 -14.68362 -14.46409 -13.91612 -13.85777 -13.80164 -13.44422 -13.31476 -13.10941 -13.05694 -12.91541 -12.79046 -12.71266 -12.59998 -12.21895 -12.11699 -11.82993 -11.73486 -11.72052 -11.49507 -11.36985 -10.99269 -10.87815 -10.69175 -10.39338 -9.85813 -9.22005 -8.37366 -6.48232 0.01935 0.83042 1.11326 1.36854 1.40457 1.49141 1.71942 1.81097 2.23592 2.29235 2.54566 2.95360 3.18945 3.32015 3.51936 3.74115 3.80488 3.86459 4.14048 4.16539 4.35997 4.52704 4.55533 4.59760 4.65139 4.67640 4.81068 4.83749 4.83923 4.89088 4.90952 4.94461 5.00165 5.03875 5.06931 5.18462 5.23558 5.31151 5.46846 5.50367 5.73554 5.77047 5.97859 6.10702 6.37774 6.51793 6.57853 6.73884 6.79272 6.92103 7.14697 8.79695 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034743 B = 0.001797 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.723374 B =15580.583810 C =15894.450407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.160 4.160 4 C 0.133 3.867 5 C -0.151 4.151 6 O -0.562 6.562 7 C 0.086 3.914 8 N -0.675 5.675 9 C 0.522 3.478 10 O -0.537 6.537 11 C 0.516 3.484 12 O -0.507 6.507 13 N -0.602 5.602 14 C 0.258 3.742 15 C -0.289 4.289 16 C 0.066 3.934 17 N -0.339 5.339 18 C 0.238 3.762 19 C -0.549 4.549 20 H 0.025 0.975 21 C 0.013 3.987 22 N -0.942 5.942 23 Si 0.957 3.043 24 H -0.267 1.267 25 H -0.226 1.226 26 H -0.279 1.279 27 N -0.343 5.343 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.386 0.614 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.421 0.579 42 H 0.427 0.573 43 H 0.177 0.823 44 H 0.217 0.783 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.667 14.993 -7.275 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.217 4.217 4 C 0.092 3.908 5 C -0.208 4.208 6 O -0.371 6.371 7 C -0.036 4.036 8 N -0.329 5.329 9 C 0.301 3.699 10 O -0.414 6.414 11 C 0.297 3.703 12 O -0.380 6.380 13 N -0.251 5.251 14 C 0.003 3.997 15 C -0.319 4.319 16 C -0.082 4.082 17 N -0.122 5.122 18 C 0.118 3.882 19 C -0.587 4.587 20 H 0.044 0.956 21 C -0.185 4.185 22 N -0.581 5.581 23 Si 0.777 3.223 24 H -0.192 1.192 25 H -0.149 1.149 26 H -0.204 1.204 27 N -0.174 5.174 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.260 0.740 42 H 0.265 0.735 43 H 0.194 0.806 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.525 14.526 -7.474 31.152 hybrid contribution 0.527 0.147 0.165 0.572 sum -25.997 14.673 -7.309 30.734 Atomic orbital electron populations 1.21787 0.93863 1.02270 1.02078 1.21675 0.97322 0.97039 0.97278 1.21987 1.01313 0.95329 1.03088 1.21407 0.88973 0.94036 0.86409 1.21914 1.02986 0.92936 1.02958 1.86573 1.76875 1.30113 1.43514 1.22523 0.95659 0.96592 0.88856 1.45669 1.05141 1.51298 1.30800 1.19447 0.84312 0.81533 0.84565 1.90801 1.55873 1.48040 1.46677 1.20360 0.81724 0.81855 0.86330 1.90689 1.54987 1.46320 1.45975 1.42135 1.07820 1.48732 1.26438 1.19379 0.91803 0.97031 0.91444 1.21798 1.01809 1.09417 0.98904 1.23329 0.82946 1.00283 1.01668 1.48585 1.07194 1.37094 1.19288 1.19954 0.80646 0.95282 0.92297 1.21243 1.04970 1.36210 0.96289 0.95634 1.25947 0.95463 0.93472 1.03663 1.70055 1.13274 1.37029 1.37761 0.85601 0.80249 0.78420 0.77983 1.19203 1.14900 1.20397 1.77383 1.17472 1.17843 1.04717 0.92471 0.92098 0.92291 0.89485 0.91536 0.91647 0.92202 0.92464 0.90490 0.89881 0.76336 0.89603 0.89543 0.74004 0.73471 0.80612 0.76692 0.89451 0.93622 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.69 71.98 0.63 -0.40 16 2 C -0.11 -0.78 2.34 -10.79 -0.03 -0.81 16 3 C -0.16 -0.92 8.53 71.98 0.61 -0.30 16 4 C 0.13 1.25 0.50 -10.79 -0.01 1.24 16 5 C -0.15 -1.52 8.26 71.98 0.59 -0.93 16 6 O -0.56 -6.09 12.21 -148.98 -1.82 -7.91 16 7 C 0.09 1.08 4.31 86.38 0.37 1.45 16 8 N -0.68 -11.65 5.18 -464.52 -2.41 -14.06 16 9 C 0.52 12.52 7.89 87.23 0.69 13.21 16 10 O -0.54 -15.01 16.48 -3.29 -0.05 -15.06 16 11 C 0.52 14.83 7.85 87.24 0.69 15.51 16 12 O -0.51 -15.36 13.60 -3.37 -0.05 -15.41 16 13 N -0.60 -19.89 5.43 -308.90 -1.68 -21.57 16 14 C 0.26 10.27 8.10 133.40 1.08 11.35 16 15 C -0.29 -10.41 9.60 22.12 0.21 -10.19 16 16 C 0.07 2.31 11.43 83.51 0.95 3.27 16 17 N -0.34 -14.95 3.67 -351.85 -1.29 -16.24 16 18 C 0.24 10.83 5.33 85.63 0.46 11.28 16 19 C -0.55 -31.64 9.79 25.60 0.25 -31.39 16 20 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 21 C 0.01 0.75 5.47 84.65 0.46 1.22 16 22 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 23 Si 0.96 40.45 27.47 68.60 1.88 42.33 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.23 -8.13 6.54 99.48 0.65 -7.48 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 N -0.34 -16.07 12.42 -54.53 -0.68 -16.75 16 28 H 0.06 0.49 7.68 -2.39 -0.02 0.47 16 29 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.44 6.43 -2.39 -0.02 0.42 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.06 0.29 6.78 -2.39 -0.02 0.27 16 34 H 0.06 0.38 6.55 -2.39 -0.02 0.37 16 35 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 36 H 0.08 0.74 6.43 -2.39 -0.02 0.72 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.39 2.31 7.33 -74.05 -0.54 1.76 16 39 H 0.09 1.02 6.71 -2.39 -0.02 1.00 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.42 6.94 6.46 -92.71 -0.60 6.34 16 42 H 0.43 13.33 8.29 -92.71 -0.77 12.56 16 43 H 0.18 5.81 5.91 -2.91 -0.02 5.80 16 44 H 0.22 5.32 8.06 -2.91 -0.02 5.30 16 45 H 0.09 3.40 7.12 -2.39 -0.02 3.38 16 46 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 47 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -76.70 384.24 0.25 -76.44 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.93 Total: 31.68 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.97 Total: 14.50 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.75 Total: -126.58 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.92 Total: -38.38 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Total: -76.70 0.25 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252775892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds