Wall clock time and date at job start Tue Mar 31 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 N 1.46503 * 109.46888 * 180.02562 * 15 14 13 17 17 C 1.34783 * 120.00033 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.47188 * 179.97438 * 19 17 16 21 21 C 1.36159 * 119.85443 * 90.00128 * 20 19 17 22 22 C 1.35537 * 119.26027 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.50258 * 180.02562 * 22 21 20 24 24 C 1.40741 * 119.00097 * 359.97438 * 22 21 20 25 25 O 1.35157 * 120.16988 * 179.97438 * 24 22 21 26 26 N 1.32432 * 119.66465 * 0.02562 * 24 22 21 27 27 C 1.33262 * 120.73007 * 359.74341 * 26 24 22 28 28 O 1.21976 * 119.47606 * 180.28173 * 27 26 24 29 29 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 30 30 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 31 31 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 32 32 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 33 33 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 34 34 H 0.97002 * 120.00670 * 179.97438 * 8 7 5 35 35 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 36 36 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 37 37 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 38 38 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 39 39 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 40 40 H 0.97000 * 119.99867 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47418 * 299.99793 * 19 17 16 42 42 H 1.08999 * 109.46921 * 59.99757 * 19 17 16 43 43 H 1.08009 * 120.36914 * 359.95505 * 21 20 19 44 44 H 1.08997 * 109.47643 * 89.99367 * 23 22 21 45 45 H 1.08999 * 109.47314 * 210.00071 * 23 22 21 46 46 H 1.08999 * 109.46560 * 329.99159 * 23 22 21 47 47 H 0.96692 * 114.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 7 1.2287 5.6577 2.2892 17 6 0.9998 6.4452 3.3589 18 8 0.8646 5.9507 4.4580 19 6 0.9120 7.9399 3.1890 20 7 0.6586 8.5651 4.4895 21 6 1.7044 8.9436 5.2749 22 6 1.4561 9.5214 6.4755 23 6 2.5925 9.9516 7.3670 24 6 0.1210 9.7145 6.8768 25 8 -0.1536 10.2879 8.0695 26 7 -0.8648 9.3306 6.0802 27 6 -0.6069 8.7678 4.9001 28 8 -1.5326 8.4276 4.1823 29 1 -0.3633 -1.0227 -0.1001 30 1 -0.3633 0.4248 0.9358 31 1 -0.3633 0.5981 -0.8357 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7977 -0.0493 -2.9748 35 1 0.7987 1.7197 1.6189 36 1 2.5182 3.9269 0.6894 37 1 0.7651 3.7925 0.4126 38 1 0.3756 3.8293 2.8612 39 1 2.1288 3.9637 3.1380 40 1 1.3372 6.0531 1.4102 41 1 1.8508 8.3152 2.7819 42 1 0.0976 8.1806 2.5057 43 1 2.7205 8.7849 4.9449 44 1 2.8657 10.9812 7.1361 45 1 2.2824 9.8830 8.4097 46 1 3.4514 9.3016 7.1999 47 1 -1.0984 10.3774 8.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:28 Heat of formation + Delta-G solvation = -67.600082 kcal Electronic energy + Delta-G solvation = -28672.019667 eV Core-core repulsion = 24469.897184 eV Total energy + Delta-G solvation = -4202.122483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22094 -39.87307 -38.92433 -37.12703 -36.73436 -35.08156 -34.79937 -33.33265 -32.54346 -31.34697 -29.56084 -27.74558 -26.89844 -25.87985 -25.07860 -23.19269 -22.72385 -21.60192 -20.79084 -20.16861 -19.59955 -18.62572 -17.82739 -17.44835 -16.43326 -16.26135 -16.04813 -15.70532 -15.48954 -14.98532 -14.87437 -14.64101 -14.58258 -14.28154 -13.97733 -13.84692 -13.60095 -13.49102 -13.42476 -12.82660 -12.78736 -12.46164 -12.22188 -12.01250 -11.96111 -11.55945 -11.24323 -11.06857 -10.94209 -10.85149 -10.69657 -10.61531 -10.17386 -10.13768 -10.02233 -9.74668 -9.66472 -9.19479 -9.10472 -8.74575 -8.40585 -7.37022 -6.02796 -4.07624 0.28399 1.31188 1.90975 2.35167 2.77257 2.96212 3.28665 3.33916 3.36753 3.49714 3.85027 4.05814 4.26544 4.37843 4.42397 4.47651 4.69182 4.76608 4.89035 5.11241 5.22989 5.27007 5.38710 5.44438 5.50802 5.59821 5.80014 5.87423 5.97159 6.11487 6.12768 6.22776 6.29427 6.37519 6.47603 6.64482 6.80439 7.01045 7.11156 7.28820 7.40618 7.45515 7.71589 7.83782 7.85095 7.98001 8.18530 8.31677 8.64579 8.99603 9.57452 11.02488 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.001966 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.865450 B =14238.302298 C =15168.530637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.683 5.683 14 C 0.058 3.942 15 C 0.121 3.879 16 N -0.717 5.717 17 C 0.499 3.501 18 O -0.530 6.530 19 C 0.075 3.925 20 N -0.509 5.509 21 C 0.207 3.793 22 C -0.252 4.252 23 C -0.085 4.085 24 C 0.464 3.536 25 O -0.446 6.446 26 N -0.611 5.611 27 C 0.660 3.340 28 O -0.530 6.530 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.261 0.739 35 H 0.320 0.680 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.403 0.597 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.182 0.818 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 21.318 14.077 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.315 5.315 14 C -0.072 4.072 15 C -0.002 4.002 16 N -0.370 5.370 17 C 0.282 3.718 18 O -0.406 6.406 19 C -0.052 4.052 20 N -0.224 5.224 21 C 0.072 3.928 22 C -0.261 4.261 23 C -0.143 4.143 24 C 0.262 3.738 25 O -0.240 6.240 26 N -0.367 5.367 27 C 0.362 3.638 28 O -0.404 6.404 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.237 0.763 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.199 0.801 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -2.193 20.690 14.593 25.414 hybrid contribution 0.337 0.046 -1.263 1.308 sum -1.856 20.737 13.330 24.721 Atomic orbital electron populations 1.21888 0.99529 0.99857 0.99563 1.21775 0.91288 1.00191 1.03206 1.19167 0.95559 0.90077 0.83847 0.97957 1.21153 0.91156 1.36916 1.04273 0.92099 1.24967 0.98166 0.95569 0.95843 1.69858 1.34835 1.39275 1.09533 0.86591 0.85649 0.78101 0.77194 1.20273 1.21442 1.20474 1.60581 1.36339 1.01151 1.33467 1.21944 1.00888 0.91268 0.93125 1.21468 1.02220 0.77145 0.99375 1.45873 1.72523 1.08287 1.10279 1.20537 0.77366 0.88680 0.85192 1.90770 1.49016 1.75540 1.25251 1.21848 1.06630 0.91705 0.85011 1.45982 1.08050 1.49978 1.18407 1.22228 0.94037 0.87761 0.88769 1.19346 0.93942 1.14454 0.98353 1.20395 0.94168 1.01320 0.98441 1.20284 0.89612 0.80568 0.83366 1.84969 1.34405 1.73661 1.30978 1.69657 1.32421 1.27353 1.07301 1.17268 0.81211 0.80312 0.84976 1.91017 1.41734 1.53845 1.53847 0.94274 0.94581 0.93886 0.88147 0.93923 0.92949 0.86296 0.90077 0.96087 0.91931 0.90434 0.76299 0.85550 0.84773 0.80093 0.91225 0.90571 0.91129 0.72612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.65 37.16 0.36 -2.50 16 2 C -0.13 -2.89 5.36 -26.73 -0.14 -3.03 16 3 C 0.22 5.25 2.02 -68.86 -0.14 5.11 16 4 H 0.00 0.07 7.85 -51.93 -0.41 -0.33 16 5 C -0.50 -13.14 8.55 -34.44 -0.29 -13.43 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.71 6.27 -107.95 -0.68 -14.38 16 14 C 0.06 0.98 5.57 -3.82 -0.02 0.95 16 15 C 0.12 1.77 5.98 -4.04 -0.02 1.75 16 16 N -0.72 -8.20 5.56 -60.29 -0.33 -8.54 16 17 C 0.50 6.14 7.90 -10.99 -0.09 6.06 16 18 O -0.53 -8.97 16.43 5.56 0.09 -8.88 16 19 C 0.07 0.62 5.83 -5.20 -0.03 0.59 16 20 N -0.51 -5.24 2.08 -123.17 -0.26 -5.49 16 21 C 0.21 1.45 10.06 -16.60 -0.17 1.28 16 22 C -0.25 -1.85 5.88 -104.64 -0.62 -2.46 16 23 C -0.09 -0.38 9.83 36.01 0.35 -0.03 16 24 C 0.46 4.30 7.89 -16.35 -0.13 4.17 16 25 O -0.45 -2.81 12.71 -17.17 -0.22 -3.02 16 26 N -0.61 -7.94 10.40 -16.72 -0.17 -8.12 16 27 C 0.66 9.58 8.34 -88.44 -0.74 8.84 16 28 O -0.53 -9.63 16.72 4.94 0.08 -9.54 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.61 6.65 -51.93 -0.35 0.27 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 2.59 5.94 -51.93 -0.31 2.29 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.32 5.95 6.65 -39.29 -0.26 5.69 16 36 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 41 H 0.13 0.40 8.03 -51.93 -0.42 -0.01 16 42 H 0.13 1.09 7.37 -51.93 -0.38 0.71 16 43 H 0.18 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.38 7.61 -51.93 -0.40 -0.02 16 46 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 47 H 0.42 1.24 8.98 45.56 0.41 1.65 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -37.73 395.19 -7.91 -45.64 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.21 Total: 6.04 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.77 Total: 8.67 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.82 Total: -60.64 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.73 -7.91 -45.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.957 kcal (2) G-P(sol) polarization free energy of solvation -37.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds