Wall clock time and date at job start Tue Mar 31 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 N 1.46503 * 109.46888 * 180.02562 * 15 14 13 17 17 C 1.34783 * 120.00033 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.47188 * 179.97438 * 19 17 16 21 21 C 1.36159 * 119.85443 * 90.00128 * 20 19 17 22 22 C 1.35537 * 119.26027 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.50258 * 180.02562 * 22 21 20 24 24 C 1.40741 * 119.00097 * 359.97438 * 22 21 20 25 25 O 1.35157 * 120.16988 * 179.97438 * 24 22 21 26 26 N 1.32432 * 119.66465 * 0.02562 * 24 22 21 27 27 C 1.33262 * 120.73007 * 359.74341 * 26 24 22 28 28 O 1.21976 * 119.47606 * 180.28173 * 27 26 24 29 29 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 30 30 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 31 31 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 32 32 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 33 33 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 34 34 H 0.97002 * 120.00670 * 179.97438 * 8 7 5 35 35 H 1.00907 * 111.00182 * 329.17146 * 13 3 2 36 36 H 1.08999 * 109.47376 * 305.19248 * 14 13 3 37 37 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 38 38 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 39 39 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 40 40 H 0.97000 * 119.99867 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47418 * 299.99793 * 19 17 16 42 42 H 1.08999 * 109.46921 * 59.99757 * 19 17 16 43 43 H 1.08009 * 120.36914 * 359.95505 * 21 20 19 44 44 H 1.08997 * 109.47643 * 89.99367 * 23 22 21 45 45 H 1.08999 * 109.47314 * 210.00071 * 23 22 21 46 46 H 1.08999 * 109.46560 * 329.99159 * 23 22 21 47 47 H 0.96692 * 114.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 7 1.2287 5.6577 2.2892 17 6 0.9998 6.4452 3.3589 18 8 0.8646 5.9507 4.4580 19 6 0.9120 7.9399 3.1890 20 7 0.6586 8.5651 4.4895 21 6 1.7044 8.9436 5.2749 22 6 1.4561 9.5214 6.4755 23 6 2.5925 9.9516 7.3670 24 6 0.1210 9.7145 6.8768 25 8 -0.1536 10.2879 8.0695 26 7 -0.8648 9.3306 6.0802 27 6 -0.6069 8.7678 4.9001 28 8 -1.5326 8.4276 4.1823 29 1 -0.3633 -1.0227 -0.1001 30 1 -0.3633 0.4248 0.9358 31 1 -0.3633 0.5981 -0.8357 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7977 -0.0493 -2.9748 35 1 0.7987 1.7197 1.6189 36 1 2.5182 3.9269 0.6894 37 1 0.7651 3.7925 0.4126 38 1 0.3756 3.8293 2.8612 39 1 2.1288 3.9637 3.1380 40 1 1.3372 6.0531 1.4102 41 1 1.8508 8.3152 2.7819 42 1 0.0976 8.1806 2.5057 43 1 2.7205 8.7849 4.9449 44 1 2.8657 10.9812 7.1361 45 1 2.2824 9.8830 8.4097 46 1 3.4514 9.3016 7.1999 47 1 -1.0984 10.3774 8.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:27 Heat of formation + Delta-G solvation = -101.652517 kcal Electronic energy + Delta-G solvation = -28673.496292 eV Core-core repulsion = 24469.897184 eV Total energy + Delta-G solvation = -4203.599107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99604 -40.81184 -39.69919 -38.38939 -37.94916 -36.27728 -35.65277 -34.31618 -34.00289 -32.98252 -30.56534 -29.06652 -27.75940 -27.29239 -25.78263 -24.72013 -23.74979 -22.93197 -21.78701 -21.39184 -20.87356 -19.28500 -18.74777 -18.40412 -18.22376 -17.16674 -17.01040 -16.95197 -16.64808 -16.31834 -16.08033 -15.61572 -15.54285 -15.40974 -14.99996 -14.88795 -14.75921 -14.56643 -14.07818 -13.98352 -13.86973 -13.59785 -13.37001 -13.18193 -12.95996 -12.88769 -12.76217 -12.64133 -12.57103 -12.34862 -12.02634 -11.96457 -11.58267 -11.49934 -11.38816 -11.07311 -11.00468 -10.99164 -10.41677 -10.22229 -9.47407 -9.06501 -8.05340 -6.17553 -0.37193 0.58273 1.18587 1.41679 1.44247 1.46343 1.53529 2.03421 2.19741 2.45782 2.64374 3.20151 3.22636 3.47730 3.58368 3.73627 3.75641 3.95939 4.03937 4.15864 4.21483 4.23296 4.38258 4.49025 4.55577 4.56679 4.70397 4.94699 4.96307 4.97020 5.01259 5.07426 5.11133 5.22854 5.23040 5.29646 5.36619 5.45988 5.58858 5.75251 5.88210 6.11380 6.33526 6.38742 6.47906 6.62202 6.91712 6.95991 6.98741 7.07220 7.51395 8.97695 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.001966 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.865450 B =14238.302298 C =15168.530637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.025 1.025 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.689 5.689 14 C 0.066 3.934 15 C 0.138 3.862 16 N -0.706 5.706 17 C 0.498 3.502 18 O -0.580 6.580 19 C 0.080 3.920 20 N -0.510 5.510 21 C 0.209 3.791 22 C -0.256 4.256 23 C -0.081 4.081 24 C 0.461 3.539 25 O -0.436 6.436 26 N -0.652 5.652 27 C 0.648 3.352 28 O -0.590 6.590 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.260 0.740 35 H 0.329 0.671 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.420 0.580 41 H 0.189 0.811 42 H 0.135 0.865 43 H 0.232 0.768 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 22.890 14.687 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.119 3.881 4 H -0.007 1.007 5 C -0.550 4.550 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.321 5.321 14 C -0.064 4.064 15 C 0.014 3.986 16 N -0.360 5.360 17 C 0.284 3.716 18 O -0.460 6.460 19 C -0.046 4.046 20 N -0.224 5.224 21 C 0.075 3.925 22 C -0.264 4.264 23 C -0.139 4.139 24 C 0.262 3.738 25 O -0.232 6.232 26 N -0.411 5.411 27 C 0.350 3.650 28 O -0.469 6.469 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.257 0.743 41 H 0.206 0.794 42 H 0.153 0.847 43 H 0.248 0.752 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -0.152 22.319 15.237 27.025 hybrid contribution -0.263 -0.392 -1.340 1.421 sum -0.415 21.927 13.896 25.963 Atomic orbital electron populations 1.21761 0.96415 1.01141 1.00481 1.21618 0.94107 0.99159 1.01275 1.18935 0.94236 0.90576 0.84383 1.00726 1.21421 0.92629 1.36857 1.04140 0.92932 1.25687 1.02258 0.95312 0.95634 1.69992 1.36337 1.39793 1.09841 0.85644 0.80751 0.78410 0.76976 1.20167 1.21259 1.19483 1.60441 1.37137 1.03010 1.31508 1.21865 1.00680 0.89393 0.94457 1.21050 1.01100 0.79044 0.97445 1.45699 1.72051 1.06900 1.11305 1.21249 0.75793 0.90376 0.84225 1.90751 1.51249 1.76788 1.27205 1.22102 1.09737 0.88406 0.84335 1.45892 1.07589 1.49541 1.19394 1.23076 0.95045 0.86225 0.88125 1.19800 0.93810 1.13782 0.98973 1.20463 0.93482 1.02615 0.97325 1.20643 0.90081 0.79727 0.83382 1.84969 1.35803 1.72824 1.29641 1.69503 1.34491 1.29233 1.07871 1.17467 0.82064 0.80347 0.85087 1.90950 1.43731 1.56714 1.55512 0.92560 0.92514 0.94318 0.91249 0.94552 0.93077 0.85297 0.91020 0.95253 0.92957 0.91734 0.74271 0.79403 0.84673 0.75187 0.89652 0.91156 0.89240 0.71069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.65 71.98 0.69 -4.50 16 2 C -0.12 -5.67 5.36 30.60 0.16 -5.51 16 3 C 0.23 10.89 2.02 44.17 0.09 10.98 16 4 H -0.02 -1.31 7.85 -2.39 -0.02 -1.33 16 5 C -0.51 -27.27 8.55 25.60 0.22 -27.05 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -51.39 11.29 21.45 0.24 -51.15 16 9 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 N -0.69 -27.43 6.27 -495.44 -3.11 -30.54 16 14 C 0.07 2.17 5.57 86.30 0.48 2.66 16 15 C 0.14 3.94 5.98 86.38 0.52 4.46 16 16 N -0.71 -15.02 5.56 -463.05 -2.57 -17.60 16 17 C 0.50 11.52 7.90 87.65 0.69 12.21 16 18 O -0.58 -19.43 16.43 -3.03 -0.05 -19.47 16 19 C 0.08 1.11 5.83 85.63 0.50 1.61 16 20 N -0.51 -9.67 2.08 -661.80 -1.38 -11.04 16 21 C 0.21 2.27 10.06 83.40 0.84 3.10 16 22 C -0.26 -3.13 5.88 -19.88 -0.12 -3.25 16 23 C -0.08 -0.46 9.83 71.24 0.70 0.24 16 24 C 0.46 8.18 7.89 85.21 0.67 8.85 16 25 O -0.44 -5.07 12.71 -84.36 -1.07 -6.14 16 26 N -0.65 -17.34 10.40 -438.82 -4.56 -21.90 16 27 C 0.65 19.11 8.34 179.59 1.50 20.61 16 28 O -0.59 -22.43 16.72 -5.24 -0.09 -22.52 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.84 6.65 -2.39 -0.02 1.83 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 3.65 5.94 -2.39 -0.01 3.64 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.33 12.00 6.65 -89.69 -0.60 11.40 16 36 H 0.07 2.50 7.92 -2.39 -0.02 2.48 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.42 6.07 8.47 -92.71 -0.79 5.28 16 41 H 0.19 0.22 8.03 -2.39 -0.02 0.20 16 42 H 0.14 1.98 7.37 -2.39 -0.02 1.96 16 43 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.07 0.51 7.61 -2.39 -0.02 0.50 16 46 H 0.09 0.21 8.09 -2.39 -0.02 0.19 16 47 H 0.43 2.37 8.98 -74.06 -0.66 1.71 16 Total: -1.00 -86.90 395.19 -4.19 -91.09 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -1.02 Total: 19.40 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 7.39 Total: 25.36 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -11.38 Total: -132.23 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -1.21 Total: -48.13 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -86.90 -4.19 -91.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.561 kcal (2) G-P(sol) polarization free energy of solvation -86.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds