Wall clock time and date at job start Tue Mar 31 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46914 * 2 1 4 4 H 1.09006 * 109.47091 * 54.50293 * 3 2 1 5 5 C 1.50697 * 109.47283 * 174.49962 * 3 2 1 6 6 H 1.08000 * 119.99771 * 119.99801 * 5 3 2 7 7 C 1.37875 * 120.00577 * 300.00513 * 5 3 2 8 8 N 1.31524 * 119.99494 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00503 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46979 * 89.99953 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.46718 * 329.99923 * 9 7 5 13 13 N 1.46893 * 109.47259 * 294.50304 * 3 2 1 14 14 C 1.46906 * 110.99964 * 154.42207 * 13 3 2 15 15 C 1.53006 * 109.46891 * 174.79253 * 14 13 3 16 16 N 1.46496 * 109.46791 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00355 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00317 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47294 * 179.97438 * 19 17 16 21 21 C 1.36158 * 119.85155 * 89.99865 * 20 19 17 22 22 C 1.35541 * 119.25796 * 179.97438 * 21 20 19 23 23 C 1.50702 * 120.50165 * 180.02562 * 22 21 20 24 24 C 1.40739 * 119.00070 * 0.02562 * 22 21 20 25 25 O 1.35153 * 120.16610 * 179.97438 * 24 22 21 26 26 N 1.32428 * 119.66897 * 0.02562 * 24 22 21 27 27 C 1.33271 * 120.72570 * 359.73507 * 26 24 22 28 28 O 1.21983 * 119.47440 * 180.28069 * 27 26 24 29 29 H 1.08992 * 109.47091 * 66.00660 * 1 2 3 30 30 H 1.09006 * 109.46805 * 186.00442 * 1 2 3 31 31 H 1.09001 * 109.46883 * 306.00164 * 1 2 3 32 32 H 1.09002 * 109.47270 * 240.00262 * 2 1 3 33 33 H 1.09004 * 109.47667 * 119.99849 * 2 1 3 34 34 H 0.96997 * 119.99428 * 179.97438 * 8 7 5 35 35 H 1.00901 * 110.99980 * 30.47077 * 13 3 2 36 36 H 1.08996 * 109.47029 * 294.78474 * 14 13 3 37 37 H 1.08989 * 109.46984 * 54.79165 * 14 13 3 38 38 H 1.09003 * 109.47013 * 300.00030 * 15 14 13 39 39 H 1.08995 * 109.47206 * 59.99743 * 15 14 13 40 40 H 0.97005 * 120.00470 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.46991 * 299.99749 * 19 17 16 42 42 H 1.09006 * 109.46948 * 59.99352 * 19 17 16 43 43 H 1.08000 * 120.37355 * 359.95472 * 21 20 19 44 44 H 1.09002 * 109.46878 * 90.00128 * 23 22 21 45 45 H 1.08996 * 109.47182 * 210.00294 * 23 22 21 46 46 H 1.09004 * 109.47360 * 329.99965 * 23 22 21 47 47 H 0.96700 * 114.00362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 0.8367 5 6 3.5408 1.4448 0.1362 6 1 4.1524 1.8872 -0.6363 7 6 4.1332 0.8821 1.2468 8 7 3.3883 0.3438 2.1876 9 14 5.9935 0.8843 1.4152 10 1 6.4255 2.1193 2.1178 11 1 6.4214 -0.3045 2.1956 12 1 6.6127 0.8400 0.0661 13 7 1.6616 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3008 4.2068 -2.4477 16 7 1.2081 5.6591 -2.2791 17 6 0.9748 6.4479 -3.3467 18 8 0.8421 5.9556 -4.4471 19 6 0.8800 7.9420 -3.1734 20 7 0.6240 8.5690 -4.4725 21 6 -0.6571 8.7640 -4.8902 22 6 -0.8802 9.3457 -6.0939 23 6 -2.2868 9.5755 -6.5836 24 6 0.2217 9.7319 -6.8797 25 8 0.0265 10.3135 -8.0840 26 7 1.4508 9.5218 -6.4336 27 6 1.6561 8.9531 -5.2460 28 8 2.7979 8.7749 -4.8552 29 1 -0.3633 0.4178 -0.9388 30 1 -0.3633 -1.0221 0.1075 31 1 -0.3633 0.6041 0.8314 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.8051 -0.0524 2.9687 35 1 0.7977 1.7170 -1.6185 36 1 0.7522 3.7866 -0.4074 37 1 2.5047 3.9312 -0.6827 38 1 2.1167 3.9721 -3.1315 39 1 0.3641 3.8275 -2.8561 40 1 1.3139 6.0530 -1.3989 41 1 0.0649 8.1773 -2.4891 42 1 1.8174 8.3207 -2.7659 43 1 -1.4864 8.4583 -4.2695 44 1 -2.6307 10.5558 -6.2538 45 1 -2.3041 9.5318 -7.6725 46 1 -2.9429 8.8050 -6.1786 47 1 0.8438 10.5419 -8.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:32 Heat of formation + Delta-G solvation = -67.143739 kcal Electronic energy + Delta-G solvation = -28674.057249 eV Core-core repulsion = 24471.954555 eV Total energy + Delta-G solvation = -4202.102695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21744 -39.87316 -38.91926 -37.12069 -36.73991 -35.08177 -34.79941 -33.33610 -32.53616 -31.34867 -29.56412 -27.75044 -26.90193 -25.87481 -25.07868 -23.19292 -22.72635 -21.60843 -20.79294 -20.16347 -19.60542 -18.62800 -17.82754 -17.44788 -16.41909 -16.25695 -16.07067 -15.63322 -15.53533 -14.99489 -14.85940 -14.63816 -14.57226 -14.29320 -13.97819 -13.85755 -13.61084 -13.47643 -13.43471 -12.83200 -12.78271 -12.48198 -12.23016 -12.00994 -11.97209 -11.55760 -11.24274 -11.05510 -10.93871 -10.83928 -10.65924 -10.61125 -10.16517 -10.13726 -10.00660 -9.75074 -9.66955 -9.18396 -9.09612 -8.74469 -8.39474 -7.36536 -6.01660 -4.05972 0.28366 1.31391 1.91051 2.34746 2.77497 2.96361 3.30175 3.37250 3.42972 3.50428 3.84399 4.04729 4.25865 4.39398 4.43561 4.46347 4.68172 4.77346 4.88961 5.11171 5.21068 5.28364 5.38002 5.42542 5.49588 5.58561 5.79079 5.85826 5.96969 6.09167 6.10380 6.22748 6.30541 6.35300 6.47976 6.64880 6.78212 6.99999 7.10596 7.28686 7.39895 7.46331 7.71604 7.86077 7.86494 7.97922 8.18704 8.32281 8.65321 9.02091 9.59475 11.03682 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.001967 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.123155 B =14231.993402 C =15236.039850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.059 3.941 15 C 0.121 3.879 16 N -0.717 5.717 17 C 0.499 3.501 18 O -0.530 6.530 19 C 0.075 3.925 20 N -0.509 5.509 21 C 0.207 3.793 22 C -0.253 4.253 23 C -0.085 4.085 24 C 0.463 3.537 25 O -0.446 6.446 26 N -0.610 5.610 27 C 0.660 3.340 28 O -0.527 6.527 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.260 0.740 35 H 0.319 0.681 36 H 0.020 0.980 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.181 0.819 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 20.263 -11.907 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.072 4.072 15 C -0.002 4.002 16 N -0.370 5.370 17 C 0.282 3.718 18 O -0.406 6.406 19 C -0.052 4.052 20 N -0.224 5.224 21 C 0.071 3.929 22 C -0.261 4.261 23 C -0.143 4.143 24 C 0.261 3.739 25 O -0.241 6.241 26 N -0.366 5.366 27 C 0.362 3.638 28 O -0.401 6.401 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.237 0.763 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.198 0.802 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -13.845 19.794 -12.741 27.309 hybrid contribution 0.140 0.028 1.307 1.314 sum -13.705 19.822 -11.434 26.673 Atomic orbital electron populations 1.21884 0.99568 0.99847 0.99473 1.21780 0.91249 1.00222 1.03259 1.19168 0.95596 0.90033 0.83829 0.97965 1.21209 0.91169 1.36688 1.04345 0.92000 1.24962 0.98213 0.95535 0.95828 1.69872 1.34759 1.39390 1.09586 0.86539 0.85637 0.77366 0.78125 1.20861 1.21328 1.19849 1.60565 1.36350 1.01054 1.33531 1.21946 1.00889 0.91271 0.93088 1.21466 1.02179 0.77139 0.99430 1.45869 1.72446 1.08333 1.10305 1.20542 0.77529 0.88570 0.85148 1.90770 1.49348 1.75594 1.24856 1.21851 1.07417 0.91779 0.84144 1.45990 1.06957 1.50102 1.19391 1.22201 0.87468 0.89101 0.94089 1.19340 0.97103 1.13826 0.95865 1.20391 0.89471 1.02127 1.02292 1.20279 0.89064 0.80750 0.83793 1.84964 1.39117 1.72657 1.27319 1.69670 1.21059 1.29500 1.16401 1.17280 0.84929 0.79661 0.81966 1.91034 1.19504 1.58100 1.71492 0.94612 0.94280 0.93917 0.93897 0.88125 0.93041 0.86368 0.96157 0.90044 0.90439 0.91920 0.76299 0.85653 0.84683 0.80185 0.91238 0.90571 0.91196 0.72582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.64 37.16 0.36 -2.42 16 2 C -0.13 -2.89 5.36 -26.73 -0.14 -3.03 16 3 C 0.22 5.26 2.02 -68.87 -0.14 5.13 16 4 H 0.00 0.07 7.85 -51.93 -0.41 -0.34 16 5 C -0.50 -13.34 8.57 -34.44 -0.30 -13.63 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.70 6.27 -107.95 -0.68 -14.37 16 14 C 0.06 0.98 5.57 -3.82 -0.02 0.96 16 15 C 0.12 1.77 5.98 -4.04 -0.02 1.75 16 16 N -0.72 -8.19 5.56 -60.29 -0.33 -8.52 16 17 C 0.50 6.13 7.90 -10.98 -0.09 6.05 16 18 O -0.53 -8.97 16.43 5.55 0.09 -8.87 16 19 C 0.07 0.61 5.83 -5.19 -0.03 0.58 16 20 N -0.51 -5.24 2.08 -123.15 -0.26 -5.49 16 21 C 0.21 1.40 10.06 -16.60 -0.17 1.24 16 22 C -0.25 -1.81 5.88 -104.64 -0.62 -2.43 16 23 C -0.08 -0.36 9.83 36.01 0.35 -0.01 16 24 C 0.46 4.30 7.88 -16.35 -0.13 4.17 16 25 O -0.45 -2.82 12.71 -17.16 -0.22 -3.03 16 26 N -0.61 -8.04 10.40 -16.72 -0.17 -8.21 16 27 C 0.66 9.71 8.34 -88.43 -0.74 8.97 16 28 O -0.53 -9.82 16.72 4.93 0.08 -9.73 16 29 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.32 5.82 6.64 -39.29 -0.26 5.55 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 1.50 7.94 -51.94 -0.41 1.08 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.40 3.37 8.47 -40.82 -0.35 3.02 16 41 H 0.13 0.36 8.03 -51.93 -0.42 -0.05 16 42 H 0.14 1.13 7.37 -51.93 -0.38 0.75 16 43 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.36 7.61 -51.93 -0.40 -0.03 16 46 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 47 H 0.42 1.27 8.98 45.56 0.41 1.68 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -38.35 395.22 -7.91 -46.26 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.21 Total: 5.30 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.77 Total: 8.72 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.82 Total: -60.89 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.35 -7.91 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.886 kcal (2) G-P(sol) polarization free energy of solvation -38.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds