Wall clock time and date at job start Tue Mar 31 2020 21:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46914 * 2 1 4 4 H 1.09006 * 109.47091 * 54.50293 * 3 2 1 5 5 C 1.50697 * 109.47283 * 174.49962 * 3 2 1 6 6 H 1.08000 * 119.99771 * 119.99801 * 5 3 2 7 7 C 1.37875 * 120.00577 * 300.00513 * 5 3 2 8 8 N 1.31524 * 119.99494 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00503 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46979 * 89.99953 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.46718 * 329.99923 * 9 7 5 13 13 N 1.46893 * 109.47259 * 294.50304 * 3 2 1 14 14 C 1.46906 * 110.99964 * 154.42207 * 13 3 2 15 15 C 1.53006 * 109.46891 * 174.79253 * 14 13 3 16 16 N 1.46496 * 109.46791 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00355 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00317 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47294 * 179.97438 * 19 17 16 21 21 C 1.36158 * 119.85155 * 89.99865 * 20 19 17 22 22 C 1.35541 * 119.25796 * 179.97438 * 21 20 19 23 23 C 1.50702 * 120.50165 * 180.02562 * 22 21 20 24 24 C 1.40739 * 119.00070 * 0.02562 * 22 21 20 25 25 O 1.35153 * 120.16610 * 179.97438 * 24 22 21 26 26 N 1.32428 * 119.66897 * 0.02562 * 24 22 21 27 27 C 1.33271 * 120.72570 * 359.73507 * 26 24 22 28 28 O 1.21983 * 119.47440 * 180.28069 * 27 26 24 29 29 H 1.08992 * 109.47091 * 66.00660 * 1 2 3 30 30 H 1.09006 * 109.46805 * 186.00442 * 1 2 3 31 31 H 1.09001 * 109.46883 * 306.00164 * 1 2 3 32 32 H 1.09002 * 109.47270 * 240.00262 * 2 1 3 33 33 H 1.09004 * 109.47667 * 119.99849 * 2 1 3 34 34 H 0.96997 * 119.99428 * 179.97438 * 8 7 5 35 35 H 1.00901 * 110.99980 * 30.47077 * 13 3 2 36 36 H 1.08996 * 109.47029 * 294.78474 * 14 13 3 37 37 H 1.08989 * 109.46984 * 54.79165 * 14 13 3 38 38 H 1.09003 * 109.47013 * 300.00030 * 15 14 13 39 39 H 1.08995 * 109.47206 * 59.99743 * 15 14 13 40 40 H 0.97005 * 120.00470 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.46991 * 299.99749 * 19 17 16 42 42 H 1.09006 * 109.46948 * 59.99352 * 19 17 16 43 43 H 1.08000 * 120.37355 * 359.95472 * 21 20 19 44 44 H 1.09002 * 109.46878 * 90.00128 * 23 22 21 45 45 H 1.08996 * 109.47182 * 210.00294 * 23 22 21 46 46 H 1.09004 * 109.47360 * 329.99965 * 23 22 21 47 47 H 0.96700 * 114.00362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 0.8367 5 6 3.5408 1.4448 0.1362 6 1 4.1524 1.8872 -0.6363 7 6 4.1332 0.8821 1.2468 8 7 3.3883 0.3438 2.1876 9 14 5.9935 0.8843 1.4152 10 1 6.4255 2.1193 2.1178 11 1 6.4214 -0.3045 2.1956 12 1 6.6127 0.8400 0.0661 13 7 1.6616 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3008 4.2068 -2.4477 16 7 1.2081 5.6591 -2.2791 17 6 0.9748 6.4479 -3.3467 18 8 0.8421 5.9556 -4.4471 19 6 0.8800 7.9420 -3.1734 20 7 0.6240 8.5690 -4.4725 21 6 -0.6571 8.7640 -4.8902 22 6 -0.8802 9.3457 -6.0939 23 6 -2.2868 9.5755 -6.5836 24 6 0.2217 9.7319 -6.8797 25 8 0.0265 10.3135 -8.0840 26 7 1.4508 9.5218 -6.4336 27 6 1.6561 8.9531 -5.2460 28 8 2.7979 8.7749 -4.8552 29 1 -0.3633 0.4178 -0.9388 30 1 -0.3633 -1.0221 0.1075 31 1 -0.3633 0.6041 0.8314 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.8051 -0.0524 2.9687 35 1 0.7977 1.7170 -1.6185 36 1 0.7522 3.7866 -0.4074 37 1 2.5047 3.9312 -0.6827 38 1 2.1167 3.9721 -3.1315 39 1 0.3641 3.8275 -2.8561 40 1 1.3139 6.0530 -1.3989 41 1 0.0649 8.1773 -2.4891 42 1 1.8174 8.3207 -2.7659 43 1 -1.4864 8.4583 -4.2695 44 1 -2.6307 10.5558 -6.2538 45 1 -2.3041 9.5318 -7.6725 46 1 -2.9429 8.8050 -6.1786 47 1 0.8438 10.5419 -8.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:31 Heat of formation + Delta-G solvation = -102.093349 kcal Electronic energy + Delta-G solvation = -28675.572778 eV Core-core repulsion = 24471.954555 eV Total energy + Delta-G solvation = -4203.618223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.99531 -40.81073 -39.69875 -38.39291 -37.95245 -36.27805 -35.65251 -34.33263 -34.00284 -32.97341 -30.56007 -29.06573 -27.76208 -27.29479 -25.77962 -24.71589 -23.75100 -22.93449 -21.78474 -21.39216 -20.87266 -19.28472 -18.74674 -18.42273 -18.22214 -17.16665 -17.09257 -16.81213 -16.72583 -16.30291 -16.10396 -15.61668 -15.53796 -15.40713 -14.99273 -14.86536 -14.78287 -14.58266 -14.06766 -13.97668 -13.86329 -13.58394 -13.35931 -13.19585 -12.98750 -12.88033 -12.76213 -12.64080 -12.59897 -12.36165 -12.02941 -11.98550 -11.57668 -11.48984 -11.38655 -11.07081 -11.00242 -10.99075 -10.43721 -10.22086 -9.47148 -9.04535 -8.08242 -6.19422 -0.36592 0.58589 1.18604 1.39349 1.41411 1.41951 1.51893 2.04026 2.20090 2.43048 2.64530 3.17220 3.22991 3.47637 3.58915 3.74031 3.76098 3.95708 4.05605 4.16143 4.19753 4.24160 4.39121 4.51565 4.55846 4.58923 4.72089 4.95816 4.97180 4.97449 5.01878 5.08221 5.12127 5.22717 5.25346 5.30198 5.38199 5.46868 5.59662 5.74333 5.88941 6.11055 6.33257 6.38784 6.48794 6.62454 6.93341 6.96617 6.99264 7.07494 7.49541 8.94585 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.001967 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.123155 B =14231.993402 C =15236.039850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.513 4.513 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.066 3.934 15 C 0.138 3.862 16 N -0.706 5.706 17 C 0.497 3.503 18 O -0.580 6.580 19 C 0.080 3.920 20 N -0.510 5.510 21 C 0.210 3.790 22 C -0.256 4.256 23 C -0.080 4.080 24 C 0.460 3.540 25 O -0.437 6.437 26 N -0.654 5.654 27 C 0.647 3.353 28 O -0.591 6.591 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.261 0.739 35 H 0.332 0.668 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.420 0.580 41 H 0.192 0.808 42 H 0.132 0.868 43 H 0.235 0.765 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 21.382 -11.644 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.003 1.003 5 C -0.552 4.552 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.325 5.325 14 C -0.064 4.064 15 C 0.013 3.987 16 N -0.359 5.359 17 C 0.283 3.717 18 O -0.460 6.460 19 C -0.046 4.046 20 N -0.224 5.224 21 C 0.076 3.924 22 C -0.264 4.264 23 C -0.138 4.138 24 C 0.261 3.739 25 O -0.233 6.233 26 N -0.413 5.413 27 C 0.349 3.651 28 O -0.471 6.471 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.257 0.743 41 H 0.209 0.791 42 H 0.150 0.850 43 H 0.251 0.749 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -16.829 20.957 -12.488 29.637 hybrid contribution 0.960 -0.271 1.124 1.503 sum -15.868 20.685 -11.363 28.440 Atomic orbital electron populations 1.21747 0.95980 1.01210 1.00693 1.21616 0.94479 0.98937 1.01188 1.18915 0.93831 0.90748 0.84513 1.00336 1.21466 0.93016 1.36660 1.04049 0.93616 1.25604 1.01880 0.95372 0.95701 1.69981 1.36037 1.39756 1.09835 0.85677 0.81270 0.77594 0.77768 1.20194 1.20785 1.20235 1.60380 1.37474 1.02941 1.31666 1.21851 1.00587 0.89347 0.94584 1.21052 1.01283 0.79100 0.97233 1.45695 1.71917 1.06970 1.11352 1.21256 0.76005 0.90247 0.84158 1.90751 1.51660 1.76851 1.26738 1.22111 1.10096 0.88115 0.84253 1.45891 1.07467 1.49452 1.19601 1.23101 0.87065 0.87656 0.94533 1.19814 0.97885 1.12947 0.95757 1.20463 0.87662 1.03773 1.01923 1.20669 0.88763 0.80040 0.84452 1.84966 1.39983 1.71926 1.26392 1.69504 1.23514 1.31439 1.16797 1.17483 0.85127 0.79828 0.82616 1.90965 1.21961 1.61097 1.73037 0.92230 0.92594 0.94059 0.94751 0.91327 0.93008 0.84931 0.94092 0.92115 0.93558 0.91152 0.74266 0.79068 0.84982 0.74898 0.89660 0.91237 0.89061 0.71097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.64 71.98 0.69 -4.19 16 2 C -0.12 -5.63 5.36 30.60 0.16 -5.47 16 3 C 0.23 10.95 2.02 44.17 0.09 11.04 16 4 H -0.02 -1.09 7.85 -2.38 -0.02 -1.11 16 5 C -0.51 -28.15 8.57 25.60 0.22 -27.93 16 6 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -51.51 11.29 21.45 0.24 -51.26 16 9 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.69 -27.50 6.27 -495.45 -3.11 -30.61 16 14 C 0.07 2.17 5.57 86.30 0.48 2.66 16 15 C 0.14 3.93 5.98 86.38 0.52 4.45 16 16 N -0.71 -14.98 5.56 -463.06 -2.57 -17.55 16 17 C 0.50 11.49 7.90 87.66 0.69 12.18 16 18 O -0.58 -19.42 16.43 -3.04 -0.05 -19.47 16 19 C 0.08 1.11 5.83 85.63 0.50 1.60 16 20 N -0.51 -9.65 2.08 -661.76 -1.38 -11.03 16 21 C 0.21 2.13 10.06 83.40 0.84 2.97 16 22 C -0.26 -3.02 5.88 -19.88 -0.12 -3.13 16 23 C -0.08 -0.39 9.83 71.24 0.70 0.31 16 24 C 0.46 8.20 7.88 85.21 0.67 8.87 16 25 O -0.44 -5.12 12.71 -84.31 -1.07 -6.19 16 26 N -0.65 -17.75 10.40 -438.81 -4.56 -22.31 16 27 C 0.65 19.53 8.34 179.58 1.50 21.03 16 28 O -0.59 -23.32 16.72 -5.26 -0.09 -23.40 16 29 H 0.06 1.80 6.66 -2.39 -0.02 1.78 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 3.59 5.94 -2.38 -0.01 3.57 16 34 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.33 11.62 6.64 -89.69 -0.60 11.03 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.24 7.94 -2.39 -0.02 2.23 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.42 6.03 8.47 -92.70 -0.79 5.25 16 41 H 0.19 0.04 8.03 -2.39 -0.02 0.02 16 42 H 0.13 2.04 7.37 -2.38 -0.02 2.02 16 43 H 0.23 -0.33 8.06 -2.91 -0.02 -0.35 16 44 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.07 0.47 7.61 -2.39 -0.02 0.45 16 46 H 0.09 0.10 8.09 -2.38 -0.02 0.08 16 47 H 0.43 2.52 8.98 -74.06 -0.66 1.85 16 Total: -1.00 -89.80 395.22 -4.19 -93.99 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -1.02 Total: 16.09 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 7.39 Total: 25.54 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -11.38 Total: -132.77 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.21 Total: -49.07 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -89.80 -4.19 -93.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.105 kcal (2) G-P(sol) polarization free energy of solvation -89.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds