Wall clock time and date at job start Tue Mar 31 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.35045 * 126.39532 * 60.02686 * 13 3 2 15 15 N 1.30506 * 108.69737 * 179.97438 * 14 13 3 16 16 C 1.34125 * 109.25892 * 0.02562 * 15 14 13 17 17 C 1.34669 * 108.01735 * 359.72869 * 16 15 14 18 18 C 1.50703 * 126.58956 * 180.27710 * 17 16 15 19 19 C 1.53011 * 109.46810 * 85.17326 * 18 17 16 20 20 H 1.08996 * 109.47268 * 54.99645 * 19 18 17 21 21 N 1.46499 * 109.46619 * 295.00009 * 19 18 17 22 22 C 1.34773 * 120.00109 * 155.00292 * 21 19 18 23 23 O 1.21292 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00476 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47226 * 179.97438 * 24 22 21 26 26 N 1.46900 * 109.47192 * 179.97438 * 25 24 22 27 27 C 1.50694 * 109.47043 * 174.99886 * 19 18 17 28 28 O 1.20829 * 119.99739 * 119.99665 * 27 19 18 29 29 O 1.34224 * 120.00250 * 299.99869 * 27 19 18 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.07998 * 125.65390 * 359.96780 * 14 13 3 37 37 H 1.07997 * 125.99134 * 180.02562 * 16 15 14 38 38 H 1.09003 * 109.47476 * 205.16766 * 18 17 16 39 39 H 1.08998 * 109.47445 * 325.17227 * 18 17 16 40 40 H 0.97004 * 120.00556 * 334.99653 * 21 19 18 41 41 H 1.09000 * 109.47302 * 299.99746 * 24 22 21 42 42 H 1.09000 * 109.47658 * 59.99912 * 24 22 21 43 43 H 1.08995 * 109.47563 * 299.99817 * 25 24 22 44 44 H 1.09001 * 109.47167 * 60.00141 * 25 24 22 45 45 H 1.00906 * 111.00099 * 179.97438 * 26 25 24 46 46 H 1.00902 * 111.00758 * 303.95776 * 26 25 24 47 47 H 0.96699 * 117.00424 * 179.97438 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 2.0023 1.7139 2.4985 15 7 1.4688 2.5408 3.3557 16 6 0.7661 3.4719 2.6938 17 6 0.8729 3.2156 1.3760 18 6 0.2510 4.0063 0.2538 19 6 1.1642 5.1785 -0.1112 20 1 2.1610 4.8039 -0.3437 21 7 1.2429 6.1065 1.0197 22 6 2.3171 6.9084 1.1599 23 8 3.2187 6.8614 0.3500 24 6 2.3978 7.8634 2.3227 25 6 3.7084 8.6494 2.2471 26 7 3.7868 9.5808 3.3804 27 6 0.6045 5.8963 -1.3121 28 8 0.3023 7.0634 -1.2317 29 8 0.4415 5.2392 -2.4711 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.6209 0.8637 2.7454 37 1 0.2154 4.2872 3.1392 38 1 0.1213 3.3623 -0.6161 39 1 -0.7195 4.3871 0.5719 40 1 0.5220 6.1440 1.6676 41 1 1.5563 8.5551 2.2841 42 1 2.3644 7.3025 3.2567 43 1 4.5497 7.9576 2.2861 44 1 3.7422 9.2104 1.3132 45 1 4.6444 10.1119 3.3533 46 1 2.9837 10.1912 3.4032 47 1 0.0787 5.7416 -3.2134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:24 Heat of formation + Delta-G solvation = -81.897506 kcal Electronic energy + Delta-G solvation = -30966.280900 eV Core-core repulsion = 26763.538435 eV Total energy + Delta-G solvation = -4202.742466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49019 -40.50109 -39.28703 -36.19663 -35.60759 -35.46376 -34.97869 -32.35448 -31.95055 -30.65982 -29.68414 -28.06541 -27.02228 -24.61157 -23.51196 -23.19035 -21.53721 -21.17438 -20.53310 -19.99837 -18.89130 -18.10000 -17.36591 -16.87915 -16.81633 -16.32804 -15.97490 -15.70178 -15.33632 -15.18491 -14.63861 -14.42690 -14.21465 -14.03491 -13.53528 -13.37324 -13.18694 -12.98963 -12.86783 -12.71840 -12.39745 -12.39418 -11.97690 -11.84393 -11.66979 -11.48868 -11.40846 -11.36338 -11.12199 -10.93731 -10.68064 -10.39784 -10.30778 -10.03793 -9.85624 -9.65411 -9.29734 -9.18200 -8.90860 -8.69255 -8.48354 -7.67410 -6.35101 -4.45367 2.19421 2.51846 2.78592 2.92109 3.16711 3.24461 3.30031 3.43149 3.81989 3.86213 4.23641 4.38254 4.76250 4.83386 4.92981 4.97180 5.01163 5.13985 5.15430 5.39393 5.44272 5.50052 5.68707 5.78470 5.81917 5.89857 5.91962 5.99063 6.01275 6.20587 6.23475 6.34184 6.51080 6.54515 6.64700 6.78808 6.86879 6.99042 7.19125 7.30262 7.42712 7.45371 7.52384 7.67210 7.87541 7.92313 8.11220 8.25296 8.61519 8.82805 9.24041 10.69628 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.004186 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.559120 B = 6687.141294 C = 6984.145499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.257 3.743 4 H 0.059 0.941 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.073 3.927 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.409 5.409 14 C 0.194 3.806 15 N -0.516 5.516 16 C -0.035 4.035 17 C -0.039 4.039 18 C -0.038 4.038 19 C 0.163 3.837 20 H 0.135 0.865 21 N -0.702 5.702 22 C 0.524 3.476 23 O -0.535 6.535 24 C -0.136 4.136 25 C 0.075 3.925 26 N -0.852 5.852 27 C 0.473 3.527 28 O -0.515 6.515 29 O -0.506 6.506 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.112 0.888 35 H 0.268 0.732 36 H 0.193 0.807 37 H 0.152 0.848 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.406 0.594 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.345 0.655 46 H 0.338 0.662 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 10.293 3.793 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.157 3.843 4 H 0.076 0.924 5 C -0.575 4.575 6 H 0.084 0.916 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.086 5.086 14 C -0.089 4.089 15 N -0.235 5.235 16 C -0.186 4.186 17 C -0.158 4.158 18 C -0.077 4.077 19 C 0.055 3.945 20 H 0.153 0.847 21 N -0.355 5.355 22 C 0.311 3.689 23 O -0.411 6.411 24 C -0.176 4.176 25 C -0.056 4.056 26 N -0.382 5.382 27 C 0.313 3.687 28 O -0.403 6.403 29 O -0.316 6.316 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.210 0.790 37 H 0.169 0.831 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.241 0.759 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -6.485 9.440 4.496 12.304 hybrid contribution 0.316 1.063 -2.078 2.356 sum -6.168 10.503 2.418 12.418 Atomic orbital electron populations 1.21826 0.98458 1.00022 1.00310 1.21959 0.92551 0.98412 1.03866 1.19434 0.96138 0.90173 0.78593 0.92353 1.21224 0.89614 1.39783 1.06882 0.91602 1.24846 0.99056 0.94196 0.95001 1.69830 1.35524 1.37234 1.09367 0.86401 0.84291 0.78822 0.77564 1.20274 1.20874 1.19585 1.46070 1.33327 1.19441 1.09741 1.24531 1.02892 1.01595 0.79859 1.70215 1.13951 1.05884 1.33405 1.21713 1.05812 1.01583 0.89451 1.20580 1.04821 0.94442 0.95966 1.20071 0.96447 0.93432 0.97768 1.20420 1.03425 0.88288 0.82328 0.84720 1.45577 1.22831 1.40264 1.26797 1.20599 0.81304 0.80421 0.86625 1.90741 1.38016 1.67947 1.44412 1.21560 0.99925 0.98245 0.97889 1.21484 0.97362 0.95267 0.91458 1.58690 1.07684 1.25103 1.46680 1.24092 0.74185 0.85814 0.84597 1.90671 1.47346 1.17704 1.84621 1.84611 1.77596 1.47635 1.21759 0.93530 0.94265 0.94083 0.93804 0.87048 0.92212 0.79001 0.83069 0.88008 0.89330 0.75871 0.89003 0.87640 0.89986 0.94682 0.84293 0.85019 0.73404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.80 37.16 0.36 -2.27 16 2 C -0.13 -2.67 5.23 -26.74 -0.14 -2.81 16 3 C 0.26 5.57 2.32 -69.08 -0.16 5.41 16 4 H 0.06 1.35 6.71 -51.93 -0.35 1.01 16 5 C -0.54 -13.25 8.51 -34.44 -0.29 -13.54 16 6 H 0.07 1.70 7.73 -52.49 -0.41 1.30 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -22.38 11.30 55.43 0.63 -21.75 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.41 -7.98 2.06 -108.15 -0.22 -8.20 16 14 C 0.19 3.80 11.53 -90.37 -1.04 2.76 16 15 N -0.52 -9.89 11.25 -14.67 -0.16 -10.06 16 16 C -0.03 -0.57 11.41 -17.81 -0.20 -0.78 16 17 C -0.04 -0.67 6.00 -81.60 -0.49 -1.16 16 18 C -0.04 -0.54 4.95 -27.88 -0.14 -0.67 16 19 C 0.16 2.47 2.47 -69.08 -0.17 2.30 16 20 H 0.14 2.55 7.58 -51.93 -0.39 2.16 16 21 N -0.70 -9.34 4.09 -54.93 -0.22 -9.56 16 22 C 0.52 7.86 7.66 -10.99 -0.08 7.77 16 23 O -0.54 -10.37 15.65 5.55 0.09 -10.29 16 24 C -0.14 -1.50 5.96 -27.89 -0.17 -1.67 16 25 C 0.08 0.87 6.07 -3.82 -0.02 0.85 16 26 N -0.85 -7.82 9.62 -10.37 -0.10 -7.92 16 27 C 0.47 7.06 7.66 36.00 0.28 7.34 16 28 O -0.52 -8.55 17.08 -18.75 -0.32 -8.87 16 29 O -0.51 -6.59 13.23 -39.24 -0.52 -7.11 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.69 7.75 -51.93 -0.40 0.28 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.89 7.80 -51.93 -0.41 0.49 16 34 H 0.11 2.58 5.95 -51.93 -0.31 2.27 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.19 3.51 8.06 -52.49 -0.42 3.08 16 37 H 0.15 1.99 8.02 -52.49 -0.42 1.57 16 38 H 0.10 1.52 6.86 -51.93 -0.36 1.16 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.41 4.15 8.45 -40.82 -0.34 3.80 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 45 H 0.34 2.67 9.08 -39.29 -0.36 2.31 16 46 H 0.34 2.47 8.99 -39.29 -0.35 2.12 16 47 H 0.41 3.36 9.10 45.56 0.41 3.77 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -31.93 397.30 -8.43 -40.36 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -6.19 Total: 16.98 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.36 Total: 5.26 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.09 Total: -57.49 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.75 Total: -26.26 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.93 -8.43 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.536 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds