Wall clock time and date at job start Tue Mar 31 2020 21:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.35045 * 126.39532 * 60.02686 * 13 3 2 15 15 N 1.30506 * 108.69737 * 179.97438 * 14 13 3 16 16 C 1.34125 * 109.25892 * 0.02562 * 15 14 13 17 17 C 1.34669 * 108.01735 * 359.72869 * 16 15 14 18 18 C 1.50703 * 126.58956 * 180.27710 * 17 16 15 19 19 C 1.53011 * 109.46810 * 85.17326 * 18 17 16 20 20 H 1.08996 * 109.47268 * 54.99645 * 19 18 17 21 21 N 1.46499 * 109.46619 * 295.00009 * 19 18 17 22 22 C 1.34773 * 120.00109 * 155.00292 * 21 19 18 23 23 O 1.21292 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00476 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47226 * 179.97438 * 24 22 21 26 26 N 1.46900 * 109.47192 * 179.97438 * 25 24 22 27 27 C 1.50694 * 109.47043 * 174.99886 * 19 18 17 28 28 O 1.20829 * 119.99739 * 119.99665 * 27 19 18 29 29 O 1.34224 * 120.00250 * 299.99869 * 27 19 18 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.07998 * 125.65390 * 359.96780 * 14 13 3 37 37 H 1.07997 * 125.99134 * 180.02562 * 16 15 14 38 38 H 1.09003 * 109.47476 * 205.16766 * 18 17 16 39 39 H 1.08998 * 109.47445 * 325.17227 * 18 17 16 40 40 H 0.97004 * 120.00556 * 334.99653 * 21 19 18 41 41 H 1.09000 * 109.47302 * 299.99746 * 24 22 21 42 42 H 1.09000 * 109.47658 * 59.99912 * 24 22 21 43 43 H 1.08995 * 109.47563 * 299.99817 * 25 24 22 44 44 H 1.09001 * 109.47167 * 60.00141 * 25 24 22 45 45 H 1.00906 * 111.00099 * 179.97438 * 26 25 24 46 46 H 1.00902 * 111.00758 * 303.95776 * 26 25 24 47 47 H 0.96699 * 117.00424 * 179.97438 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 2.0023 1.7139 2.4985 15 7 1.4688 2.5408 3.3557 16 6 0.7661 3.4719 2.6938 17 6 0.8729 3.2156 1.3760 18 6 0.2510 4.0063 0.2538 19 6 1.1642 5.1785 -0.1112 20 1 2.1610 4.8039 -0.3437 21 7 1.2429 6.1065 1.0197 22 6 2.3171 6.9084 1.1599 23 8 3.2187 6.8614 0.3500 24 6 2.3978 7.8634 2.3227 25 6 3.7084 8.6494 2.2471 26 7 3.7868 9.5808 3.3804 27 6 0.6045 5.8963 -1.3121 28 8 0.3023 7.0634 -1.2317 29 8 0.4415 5.2392 -2.4711 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.6209 0.8637 2.7454 37 1 0.2154 4.2872 3.1392 38 1 0.1213 3.3623 -0.6161 39 1 -0.7195 4.3871 0.5719 40 1 0.5220 6.1440 1.6676 41 1 1.5563 8.5551 2.2841 42 1 2.3644 7.3025 3.2567 43 1 4.5497 7.9576 2.2861 44 1 3.7422 9.2104 1.3132 45 1 4.6444 10.1119 3.3533 46 1 2.9837 10.1912 3.4032 47 1 0.0787 5.7416 -3.2134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:23 Heat of formation + Delta-G solvation = -104.748028 kcal Electronic energy + Delta-G solvation = -30967.271773 eV Core-core repulsion = 26763.538435 eV Total energy + Delta-G solvation = -4203.733339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91293 -41.70749 -40.46971 -37.33057 -37.14955 -36.76161 -35.96244 -34.10007 -33.27008 -32.13671 -30.71813 -29.30006 -28.75092 -25.85476 -25.25921 -24.19929 -23.07490 -22.27193 -21.85094 -21.29165 -20.37866 -19.27171 -18.70739 -18.41151 -18.06653 -17.56413 -17.37040 -16.80313 -16.51485 -16.37561 -16.16196 -15.83195 -15.52171 -15.32437 -14.71715 -14.69197 -14.48831 -14.41586 -14.12456 -14.03312 -13.88647 -13.62626 -13.38011 -13.26051 -12.92886 -12.84303 -12.82442 -12.68738 -12.58010 -12.26909 -12.18917 -11.95305 -11.90441 -11.70998 -11.38996 -11.08147 -10.77867 -10.55215 -10.41139 -10.08192 -9.69171 -9.06102 -8.27655 -6.42181 0.98373 1.31435 1.35556 1.39455 1.45814 1.50073 1.79438 2.24785 2.32228 2.42814 2.47759 3.02360 3.49296 3.67963 3.77633 3.84299 3.95228 4.05325 4.09516 4.21628 4.27688 4.31614 4.45238 4.47849 4.56182 4.60466 4.69515 4.73934 4.82862 4.89213 4.98068 4.99634 5.13230 5.21828 5.23594 5.42149 5.48470 5.55288 5.76850 5.86001 6.05225 6.12182 6.18112 6.40230 6.44536 6.58633 6.75141 6.88393 7.15702 7.28813 7.38964 8.75590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.004186 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.559120 B = 6687.141294 C = 6984.145499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.269 3.731 4 H 0.042 0.958 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.039 3.961 8 N -0.897 5.897 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.418 5.418 14 C 0.173 3.827 15 N -0.528 5.528 16 C -0.032 4.032 17 C -0.043 4.043 18 C -0.030 4.030 19 C 0.167 3.833 20 H 0.091 0.909 21 N -0.689 5.689 22 C 0.515 3.485 23 O -0.588 6.588 24 C -0.125 4.125 25 C 0.079 3.921 26 N -0.849 5.849 27 C 0.479 3.521 28 O -0.531 6.531 29 O -0.507 6.507 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.270 0.730 36 H 0.194 0.806 37 H 0.191 0.809 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.424 0.576 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.055 0.945 44 H 0.023 0.977 45 H 0.353 0.647 46 H 0.352 0.648 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 11.321 4.791 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.168 3.832 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.064 0.936 7 C -0.163 4.163 8 N -0.534 5.534 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.096 5.096 14 C -0.110 4.110 15 N -0.247 5.247 16 C -0.182 4.182 17 C -0.160 4.160 18 C -0.069 4.069 19 C 0.059 3.941 20 H 0.109 0.891 21 N -0.343 5.343 22 C 0.304 3.696 23 O -0.468 6.468 24 C -0.165 4.165 25 C -0.052 4.052 26 N -0.381 5.381 27 C 0.320 3.680 28 O -0.421 6.421 29 O -0.320 6.320 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.210 0.790 37 H 0.208 0.792 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.263 0.737 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.166 0.834 46 H 0.165 0.835 47 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -8.445 10.471 5.514 14.538 hybrid contribution 0.912 0.789 -2.392 2.679 sum -7.533 11.260 3.122 13.903 Atomic orbital electron populations 1.21681 0.95859 1.01252 1.00502 1.21789 0.94790 0.97204 1.02392 1.19060 0.94243 0.90795 0.79136 0.93994 1.21371 0.91414 1.39542 1.06408 0.93605 1.25359 1.01801 0.94186 0.94973 1.69899 1.36392 1.37590 1.09555 0.85706 0.81065 0.78358 0.77464 1.19380 1.20374 1.20999 1.45955 1.34244 1.20492 1.08916 1.24675 1.03826 1.02378 0.80072 1.70234 1.14388 1.06440 1.33619 1.22324 1.05063 1.01659 0.89122 1.21098 1.04075 0.93631 0.97234 1.20138 0.97687 0.92461 0.96610 1.20157 1.01420 0.89168 0.83393 0.89099 1.45489 1.23060 1.39218 1.26536 1.21384 0.80675 0.80591 0.86990 1.90720 1.39950 1.69566 1.46576 1.21560 1.00666 0.97894 0.96338 1.21318 0.96858 0.95250 0.91809 1.58644 1.08884 1.25425 1.45100 1.23885 0.73765 0.85384 0.84920 1.90662 1.48254 1.18174 1.84999 1.84570 1.77416 1.47976 1.22068 0.93260 0.93981 0.92350 0.94154 0.89507 0.92096 0.78972 0.79179 0.88907 0.85142 0.73725 0.85817 0.86274 0.92635 0.95912 0.83384 0.83472 0.70943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.80 71.98 0.71 -3.92 16 2 C -0.12 -5.11 5.23 30.59 0.16 -4.95 16 3 C 0.27 11.88 2.32 44.24 0.10 11.99 16 4 H 0.04 2.00 6.71 -2.39 -0.02 1.98 16 5 C -0.55 -27.94 8.51 25.60 0.22 -27.72 16 6 H 0.05 2.47 7.73 -2.91 -0.02 2.44 16 7 C 0.04 2.00 5.29 84.65 0.45 2.44 16 8 N -0.90 -46.13 11.30 21.45 0.24 -45.89 16 9 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.42 -16.32 2.06 -496.07 -1.02 -17.34 16 14 C 0.17 6.75 11.53 180.26 2.08 8.83 16 15 N -0.53 -19.55 11.25 -200.31 -2.25 -21.80 16 16 C -0.03 -0.97 11.41 83.52 0.95 -0.02 16 17 C -0.04 -1.39 6.00 40.95 0.25 -1.15 16 18 C -0.03 -0.80 4.95 29.85 0.15 -0.65 16 19 C 0.17 4.97 2.47 44.25 0.11 5.08 16 20 H 0.09 3.59 7.58 -2.39 -0.02 3.57 16 21 N -0.69 -17.26 4.09 -446.10 -1.83 -19.08 16 22 C 0.52 15.13 7.66 87.66 0.67 15.80 16 23 O -0.59 -23.51 15.65 -3.07 -0.05 -23.55 16 24 C -0.12 -2.51 5.96 29.85 0.18 -2.33 16 25 C 0.08 1.79 6.07 86.30 0.52 2.31 16 26 N -0.85 -14.07 9.62 -186.72 -1.80 -15.87 16 27 C 0.48 13.88 7.66 71.23 0.55 14.42 16 28 O -0.53 -16.88 17.08 21.96 0.37 -16.51 16 29 O -0.51 -12.74 13.23 -51.35 -0.68 -13.42 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 32 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.66 7.80 -2.39 -0.02 1.64 16 34 H 0.09 4.07 5.95 -2.39 -0.01 4.06 16 35 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 36 H 0.19 7.21 8.06 -2.91 -0.02 7.19 16 37 H 0.19 4.16 8.02 -2.91 -0.02 4.13 16 38 H 0.09 2.66 6.86 -2.39 -0.02 2.65 16 39 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.42 7.26 8.45 -92.71 -0.78 6.48 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 44 H 0.02 0.56 8.10 -2.39 -0.02 0.54 16 45 H 0.35 4.98 9.08 -89.69 -0.81 4.17 16 46 H 0.35 4.24 8.99 -89.69 -0.81 3.43 16 47 H 0.43 6.43 9.10 -74.06 -0.67 5.75 16 Total: -1.00 -70.91 397.30 0.07 -70.84 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -2.03 Total: 38.32 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.09 Total: 20.15 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.66 Total: -119.98 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.35 Total: -53.48 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -70.91 0.07 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.907 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds