Wall clock time and date at job start Tue Mar 31 2020 21:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 N 1.46498 * 109.46914 * 65.00207 * 3 2 1 6 6 C 1.34783 * 119.99907 * 274.99588 * 5 3 2 7 7 O 1.21363 * 119.99783 * 0.02562 * 6 5 3 8 8 C 1.49341 * 119.99817 * 180.02562 * 6 5 3 9 9 O 1.21383 * 120.00387 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99739 * 179.72510 * 8 6 5 11 11 C 1.39930 * 120.00380 * 180.27595 * 10 8 6 12 12 C 1.40457 * 125.97563 * 359.71813 * 11 10 8 13 13 C 1.35218 * 107.86757 * 179.82329 * 12 11 10 14 14 N 1.34987 * 107.87279 * 0.43474 * 13 12 11 15 15 C 1.46503 * 125.96903 * 179.72110 * 14 13 12 16 16 C 1.50701 * 109.46572 * 124.97594 * 15 14 13 17 17 H 1.08003 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99911 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99506 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47076 * 90.00356 * 20 18 16 22 22 H 1.48504 * 109.47116 * 210.00020 * 20 18 16 23 23 H 1.48497 * 109.47452 * 330.00263 * 20 18 16 24 24 N 1.31268 * 125.98365 * 180.02562 * 11 10 8 25 25 C 1.52999 * 109.47148 * 184.99901 * 3 2 1 26 26 C 1.53007 * 109.46811 * 65.00010 * 25 3 2 27 27 C 1.52995 * 109.47221 * 184.99994 * 25 3 2 28 28 O 1.42901 * 109.47183 * 305.00026 * 25 3 2 29 29 H 1.08997 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47060 * 300.00052 * 1 2 3 31 31 H 1.08997 * 109.46731 * 60.00066 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 0.97001 * 120.00384 * 95.00544 * 5 3 2 35 35 H 0.97000 * 120.00317 * 0.28416 * 10 8 6 36 36 H 1.08007 * 126.06574 * 359.96867 * 12 11 10 37 37 H 1.08000 * 126.05874 * 180.15184 * 13 12 11 38 38 H 1.08998 * 109.46981 * 244.97600 * 15 14 13 39 39 H 1.08992 * 109.46957 * 4.98041 * 15 14 13 40 40 H 0.97006 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47123 * 60.00235 * 26 25 3 42 42 H 1.08997 * 109.46808 * 179.97438 * 26 25 3 43 43 H 1.08999 * 109.47189 * 299.99593 * 26 25 3 44 44 H 1.08994 * 109.47315 * 59.99897 * 27 25 3 45 45 H 1.08997 * 109.47392 * 180.02562 * 27 25 3 46 46 H 1.09001 * 109.47277 * 300.00110 * 27 25 3 47 47 H 0.96703 * 113.99926 * 60.00090 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3401 2.6319 0.4338 8 6 0.0402 3.3325 2.6429 9 8 0.8158 3.3654 3.5761 10 7 -1.1750 3.9043 2.7562 11 6 -1.5429 4.5354 3.9497 12 6 -0.7510 4.6418 5.1048 13 6 -1.4604 5.3231 6.0328 14 7 -2.6597 5.6297 5.4944 15 6 -3.7403 6.3611 6.1607 16 6 -4.1339 7.5496 5.3220 17 1 -3.6293 7.7414 4.3865 18 6 -5.1382 8.3924 5.7489 19 7 -5.7522 8.1592 6.8882 20 14 -5.6256 9.8661 4.7097 21 1 -6.6995 9.4709 3.7632 22 1 -6.1196 10.9530 5.5929 23 1 -4.4454 10.3460 3.9469 24 7 -2.6905 5.1265 4.1876 25 6 3.5648 1.4444 -0.1257 26 6 3.9649 0.8736 -1.4878 27 6 4.0851 2.8778 -0.0006 28 8 4.1293 0.6405 0.9121 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 2.2720 2.1232 1.9978 35 1 -1.7947 3.8782 2.0104 36 1 0.2482 4.2511 5.2290 37 1 -1.1282 5.5731 7.0295 38 1 -4.6007 5.7037 6.2857 39 1 -3.3991 6.7029 7.1377 40 1 -6.4586 8.7523 7.1888 41 1 3.5344 1.4869 -2.2794 42 1 5.0512 0.8754 -1.5775 43 1 3.5943 -0.1475 -1.5768 44 1 3.8001 3.2844 0.9696 45 1 5.1714 2.8792 -0.0906 46 1 3.6545 3.4910 -0.7922 47 1 3.8427 -0.2829 0.8943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261243248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:44 Heat of formation + Delta-G solvation = -40.868446 kcal Electronic energy + Delta-G solvation = -29339.268028 eV Core-core repulsion = 25138.304716 eV Total energy + Delta-G solvation = -4200.963312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27225 -40.51487 -39.39263 -38.23098 -35.51927 -34.75428 -33.37983 -32.74845 -32.48707 -31.04223 -29.41847 -27.87425 -27.46965 -26.70572 -24.83535 -22.90710 -22.25700 -21.29541 -20.72813 -20.34581 -19.67408 -18.48467 -17.49030 -16.85994 -16.60982 -16.51408 -16.37521 -15.71349 -15.35942 -15.28285 -14.97283 -14.69549 -14.35605 -14.25445 -13.88151 -13.44851 -13.15625 -13.02589 -12.96325 -12.80575 -12.61565 -12.42529 -12.40035 -12.29344 -12.05362 -11.93317 -11.82755 -11.51224 -11.18516 -11.11542 -11.05565 -10.88541 -10.54656 -10.52726 -10.27905 -10.03602 -9.58752 -9.53937 -9.42406 -8.65298 -8.23433 -7.58529 -6.26395 -4.31510 1.19571 2.02881 2.65600 3.02367 3.15950 3.23555 3.29361 3.34829 3.65901 3.69584 3.85746 4.01596 4.22866 4.29786 4.38489 4.44384 4.64701 4.73788 4.97274 5.08976 5.10129 5.20641 5.23319 5.32063 5.40273 5.42529 5.54228 5.59117 5.65419 5.70893 5.74582 5.80312 5.96900 6.10034 6.10722 6.31894 6.40994 6.78964 6.91005 7.01627 7.12951 7.24074 7.36995 7.62605 7.68741 7.84418 7.95176 7.97279 8.53595 8.77053 9.34313 10.82404 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.002072 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.399715 B =13511.653667 C =13699.288685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.118 3.882 4 H 0.101 0.899 5 N -0.689 5.689 6 C 0.516 3.484 7 O -0.512 6.512 8 C 0.510 3.490 9 O -0.498 6.498 10 N -0.598 5.598 11 C 0.250 3.750 12 C -0.286 4.286 13 C 0.054 3.946 14 N -0.314 5.314 15 C 0.257 3.743 16 C -0.530 4.530 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.295 5.295 25 C 0.121 3.879 26 C -0.178 4.178 27 C -0.143 4.143 28 O -0.555 6.555 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.283 -16.780 -13.978 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.013 3.987 4 H 0.119 0.881 5 N -0.343 5.343 6 C 0.296 3.704 7 O -0.387 6.387 8 C 0.290 3.710 9 O -0.371 6.371 10 N -0.247 5.247 11 C -0.002 4.002 12 C -0.317 4.317 13 C -0.097 4.097 14 N -0.096 5.096 15 C 0.140 3.860 16 C -0.568 4.568 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.126 5.126 25 C 0.080 3.920 26 C -0.236 4.236 27 C -0.200 4.200 28 O -0.362 6.362 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.255 0.745 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.188 0.812 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 18.185 -15.770 -14.119 27.906 hybrid contribution -0.004 0.110 -0.278 0.299 sum 18.181 -15.660 -14.396 27.983 Atomic orbital electron populations 1.21797 0.94160 1.01148 1.03257 1.22074 0.98030 0.95523 1.02513 1.21883 0.95040 0.94161 0.87578 0.88069 1.45665 1.15825 1.55478 1.17339 1.19860 0.82938 0.79651 0.87924 1.90796 1.50688 1.57620 1.39577 1.19953 0.82153 0.80377 0.88497 1.90717 1.50462 1.56766 1.39179 1.41996 1.16123 1.52210 1.14347 1.19012 0.94479 0.99432 0.87312 1.21519 1.03807 1.13721 0.92648 1.22583 0.87297 0.99678 1.00101 1.49169 1.13141 1.39738 1.07602 1.19798 0.82945 0.91014 0.92264 1.21248 1.19720 1.08764 1.07076 0.91264 1.24947 0.95526 0.98303 0.95302 1.69917 1.24365 1.38576 1.20424 0.86312 0.78948 0.81300 0.79858 1.20294 1.20973 1.19707 1.77403 1.18378 1.18422 0.98396 1.21492 0.89839 0.92809 0.87895 1.22509 1.02924 1.01735 0.96418 1.21782 1.02068 0.92815 1.03341 1.86597 1.72204 1.24797 1.52583 0.93120 0.92484 0.91829 0.90433 0.91302 0.74478 0.73998 0.82164 0.81231 0.93553 0.92365 0.92291 0.91086 0.91082 0.91642 0.91347 0.91369 0.90876 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.51 37.16 0.32 -0.93 16 2 C -0.14 -0.87 4.89 -26.73 -0.13 -1.00 16 3 C 0.12 0.83 1.63 -67.93 -0.11 0.72 16 4 H 0.10 0.80 7.58 -51.93 -0.39 0.41 16 5 N -0.69 -6.26 4.25 -54.27 -0.23 -6.49 16 6 C 0.52 6.14 6.46 -11.63 -0.08 6.07 16 7 O -0.51 -6.73 13.61 5.49 0.07 -6.65 16 8 C 0.51 7.41 7.85 -11.64 -0.09 7.32 16 9 O -0.50 -7.91 13.60 5.47 0.07 -7.84 16 10 N -0.60 -9.72 5.43 -11.58 -0.06 -9.78 16 11 C 0.25 4.99 8.10 -154.56 -1.25 3.74 16 12 C -0.29 -5.47 9.60 -39.82 -0.38 -5.85 16 13 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 14 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 15 C 0.26 6.45 6.26 -5.19 -0.03 6.42 16 16 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 17 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 20 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.29 -6.76 12.42 31.41 0.39 -6.37 16 25 C 0.12 0.70 0.84 -90.62 -0.08 0.63 16 26 C -0.18 -0.74 8.58 37.16 0.32 -0.42 16 27 C -0.14 -0.94 8.62 37.16 0.32 -0.62 16 28 O -0.55 -3.53 12.62 -35.23 -0.44 -3.98 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.61 5.64 -51.93 -0.29 0.32 16 31 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.08 0.33 6.34 -51.93 -0.33 0.00 16 33 H 0.07 0.37 7.00 -51.93 -0.36 0.01 16 34 H 0.42 3.78 7.33 -40.82 -0.30 3.48 16 35 H 0.42 6.28 8.29 -40.82 -0.34 5.94 16 36 H 0.16 2.89 5.91 -52.48 -0.31 2.58 16 37 H 0.17 2.64 8.06 -52.49 -0.42 2.21 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.20 6.46 -51.93 -0.34 -0.13 16 44 H 0.07 0.53 7.13 -51.93 -0.37 0.16 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.38 1.33 7.31 45.56 0.33 1.66 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -32.03 385.18 -6.75 -38.78 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.03 Total: 8.51 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.81 Total: 3.54 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.60 Total: -54.51 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.30 Total: -18.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.03 -6.75 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261243248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.092 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds