Wall clock time and date at job start Tue Mar 31 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 N 1.46498 * 109.46914 * 65.00207 * 3 2 1 6 6 C 1.34783 * 119.99907 * 274.99588 * 5 3 2 7 7 O 1.21363 * 119.99783 * 0.02562 * 6 5 3 8 8 C 1.49341 * 119.99817 * 180.02562 * 6 5 3 9 9 O 1.21383 * 120.00387 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99739 * 179.72510 * 8 6 5 11 11 C 1.39930 * 120.00380 * 180.27595 * 10 8 6 12 12 C 1.40457 * 125.97563 * 359.71813 * 11 10 8 13 13 C 1.35218 * 107.86757 * 179.82329 * 12 11 10 14 14 N 1.34987 * 107.87279 * 0.43474 * 13 12 11 15 15 C 1.46503 * 125.96903 * 179.72110 * 14 13 12 16 16 C 1.50701 * 109.46572 * 124.97594 * 15 14 13 17 17 H 1.08003 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99911 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99506 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47076 * 90.00356 * 20 18 16 22 22 H 1.48504 * 109.47116 * 210.00020 * 20 18 16 23 23 H 1.48497 * 109.47452 * 330.00263 * 20 18 16 24 24 N 1.31268 * 125.98365 * 180.02562 * 11 10 8 25 25 C 1.52999 * 109.47148 * 184.99901 * 3 2 1 26 26 C 1.53007 * 109.46811 * 65.00010 * 25 3 2 27 27 C 1.52995 * 109.47221 * 184.99994 * 25 3 2 28 28 O 1.42901 * 109.47183 * 305.00026 * 25 3 2 29 29 H 1.08997 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47060 * 300.00052 * 1 2 3 31 31 H 1.08997 * 109.46731 * 60.00066 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 0.97001 * 120.00384 * 95.00544 * 5 3 2 35 35 H 0.97000 * 120.00317 * 0.28416 * 10 8 6 36 36 H 1.08007 * 126.06574 * 359.96867 * 12 11 10 37 37 H 1.08000 * 126.05874 * 180.15184 * 13 12 11 38 38 H 1.08998 * 109.46981 * 244.97600 * 15 14 13 39 39 H 1.08992 * 109.46957 * 4.98041 * 15 14 13 40 40 H 0.97006 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47123 * 60.00235 * 26 25 3 42 42 H 1.08997 * 109.46808 * 179.97438 * 26 25 3 43 43 H 1.08999 * 109.47189 * 299.99593 * 26 25 3 44 44 H 1.08994 * 109.47315 * 59.99897 * 27 25 3 45 45 H 1.08997 * 109.47392 * 180.02562 * 27 25 3 46 46 H 1.09001 * 109.47277 * 300.00110 * 27 25 3 47 47 H 0.96703 * 113.99926 * 60.00090 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3401 2.6319 0.4338 8 6 0.0402 3.3325 2.6429 9 8 0.8158 3.3654 3.5761 10 7 -1.1750 3.9043 2.7562 11 6 -1.5429 4.5354 3.9497 12 6 -0.7510 4.6418 5.1048 13 6 -1.4604 5.3231 6.0328 14 7 -2.6597 5.6297 5.4944 15 6 -3.7403 6.3611 6.1607 16 6 -4.1339 7.5496 5.3220 17 1 -3.6293 7.7414 4.3865 18 6 -5.1382 8.3924 5.7489 19 7 -5.7522 8.1592 6.8882 20 14 -5.6256 9.8661 4.7097 21 1 -6.6995 9.4709 3.7632 22 1 -6.1196 10.9530 5.5929 23 1 -4.4454 10.3460 3.9469 24 7 -2.6905 5.1265 4.1876 25 6 3.5648 1.4444 -0.1257 26 6 3.9649 0.8736 -1.4878 27 6 4.0851 2.8778 -0.0006 28 8 4.1293 0.6405 0.9121 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 2.2720 2.1232 1.9978 35 1 -1.7947 3.8782 2.0104 36 1 0.2482 4.2511 5.2290 37 1 -1.1282 5.5731 7.0295 38 1 -4.6007 5.7037 6.2857 39 1 -3.3991 6.7029 7.1377 40 1 -6.4586 8.7523 7.1888 41 1 3.5344 1.4869 -2.2794 42 1 5.0512 0.8754 -1.5775 43 1 3.5943 -0.1475 -1.5768 44 1 3.8001 3.2844 0.9696 45 1 5.1714 2.8792 -0.0906 46 1 3.6545 3.4910 -0.7922 47 1 3.8427 -0.2829 0.8943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261243248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:43 Heat of formation + Delta-G solvation = -64.611063 kcal Electronic energy + Delta-G solvation = -29340.297586 eV Core-core repulsion = 25138.304716 eV Total energy + Delta-G solvation = -4201.992870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49722 -41.75191 -40.36468 -39.15558 -36.64025 -35.81340 -35.25672 -33.47640 -32.97209 -32.83776 -31.03064 -28.93062 -28.28086 -27.89079 -26.04823 -24.61792 -23.01071 -22.49913 -21.78204 -21.36034 -20.91131 -19.52363 -18.72376 -18.40674 -17.88784 -17.75164 -17.34172 -16.93805 -16.55945 -16.32593 -15.95915 -15.71809 -15.66047 -15.26474 -15.17803 -14.61330 -14.35079 -14.19770 -13.88351 -13.73531 -13.66189 -13.57260 -13.33133 -13.05160 -13.02297 -12.88890 -12.80488 -12.65864 -12.53049 -12.35879 -12.31907 -12.14205 -11.76271 -11.65784 -11.60237 -11.44087 -11.06239 -10.74374 -10.71279 -10.19363 -9.84503 -9.22768 -8.34546 -6.47999 0.05941 0.86424 1.13126 1.37444 1.38753 1.49665 1.74601 1.83848 2.26026 2.33437 2.58491 2.97763 3.22304 3.31478 3.49618 3.72980 3.90404 4.01109 4.13363 4.21169 4.23007 4.43948 4.61462 4.62705 4.73404 4.78437 4.82952 4.86672 4.87704 4.93459 4.94916 4.99284 5.02240 5.03151 5.12989 5.21995 5.29074 5.39418 5.42905 5.55227 5.74409 5.77644 5.86188 6.16560 6.24514 6.56322 6.63245 6.79216 6.84298 6.95572 7.21806 8.73320 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.002072 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.399715 B =13511.653667 C =13699.288685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.116 3.884 4 H 0.095 0.905 5 N -0.673 5.673 6 C 0.524 3.476 7 O -0.525 6.525 8 C 0.513 3.487 9 O -0.509 6.509 10 N -0.600 5.600 11 C 0.258 3.742 12 C -0.289 4.289 13 C 0.061 3.939 14 N -0.339 5.339 15 C 0.271 3.729 16 C -0.548 4.548 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.919 5.919 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 N -0.341 5.341 25 C 0.128 3.872 26 C -0.175 4.175 27 C -0.147 4.147 28 O -0.567 6.567 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.419 0.581 35 H 0.428 0.572 36 H 0.175 0.825 37 H 0.207 0.793 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.273 0.727 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.041 -17.611 -15.084 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.012 3.988 4 H 0.113 0.887 5 N -0.326 5.326 6 C 0.303 3.697 7 O -0.402 6.402 8 C 0.294 3.706 9 O -0.382 6.382 10 N -0.250 5.250 11 C 0.004 3.996 12 C -0.319 4.319 13 C -0.088 4.088 14 N -0.122 5.122 15 C 0.153 3.847 16 C -0.586 4.586 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.557 5.557 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.172 5.172 25 C 0.087 3.913 26 C -0.233 4.233 27 C -0.205 4.205 28 O -0.376 6.376 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.258 0.742 35 H 0.266 0.734 36 H 0.192 0.808 37 H 0.224 0.776 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 19.985 -16.642 -15.237 30.142 hybrid contribution -0.425 0.254 0.042 0.497 sum 19.561 -16.389 -15.195 29.700 Atomic orbital electron populations 1.21776 0.96041 1.01170 1.01432 1.22074 0.96153 0.94931 1.04402 1.22110 0.96093 0.94553 0.86013 0.88715 1.45694 1.14477 1.54213 1.18222 1.19344 0.83784 0.79987 0.86554 1.90804 1.51310 1.58499 1.39541 1.20510 0.81202 0.79510 0.89373 1.90691 1.50589 1.56988 1.39965 1.42122 1.17009 1.52384 1.13475 1.19334 0.93693 0.98005 0.88567 1.21749 1.04210 1.13700 0.92272 1.23244 0.85789 0.98233 1.01529 1.48916 1.13878 1.41263 1.08104 1.19393 0.83120 0.89947 0.92288 1.21392 1.20274 1.10100 1.06879 0.93037 1.25721 0.95266 1.00784 0.96396 1.69987 1.24689 1.39586 1.21487 0.85362 0.78441 0.78268 0.78435 1.19926 1.19581 1.19788 1.77316 1.20314 1.20504 0.99066 1.21417 0.88482 0.92506 0.88877 1.22489 1.03097 1.02559 0.95118 1.21829 1.02406 0.93594 1.02648 1.86581 1.72325 1.25884 1.52851 0.92192 0.94960 0.92980 0.87775 0.90140 0.74243 0.73416 0.80780 0.77629 0.95910 0.91911 0.91810 0.90685 0.90941 0.90109 0.92858 0.91046 0.90422 0.75986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.51 71.98 0.61 -1.71 16 2 C -0.14 -1.32 4.89 30.60 0.15 -1.17 16 3 C 0.12 1.41 1.63 44.99 0.07 1.49 16 4 H 0.09 1.35 7.58 -2.39 -0.02 1.33 16 5 N -0.67 -11.44 4.25 -443.95 -1.89 -13.33 16 6 C 0.52 12.17 6.46 87.23 0.56 12.74 16 7 O -0.52 -13.64 13.61 -3.29 -0.04 -13.69 16 8 C 0.51 14.69 7.85 87.24 0.69 15.38 16 9 O -0.51 -15.73 13.60 -3.35 -0.05 -15.77 16 10 N -0.60 -19.62 5.43 -308.90 -1.68 -21.30 16 11 C 0.26 10.36 8.10 133.40 1.08 11.44 16 12 C -0.29 -10.84 9.60 22.11 0.21 -10.63 16 13 C 0.06 2.31 11.43 83.51 0.95 3.26 16 14 N -0.34 -15.81 3.67 -351.85 -1.29 -17.10 16 15 C 0.27 13.96 6.26 85.63 0.54 14.50 16 16 C -0.55 -30.96 9.24 25.60 0.24 -30.72 16 17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.02 1.04 5.46 84.66 0.46 1.51 16 19 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 20 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 N -0.34 -16.03 12.42 -54.54 -0.68 -16.71 16 25 C 0.13 1.21 0.84 -10.79 -0.01 1.20 16 26 C -0.17 -0.96 8.58 71.98 0.62 -0.34 16 27 C -0.15 -1.75 8.62 71.98 0.62 -1.13 16 28 O -0.57 -5.84 12.62 -148.98 -1.88 -7.72 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.03 0.67 5.64 -2.39 -0.01 0.65 16 31 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 32 H 0.10 0.50 6.34 -2.39 -0.02 0.48 16 33 H 0.08 0.62 7.00 -2.39 -0.02 0.61 16 34 H 0.42 7.05 7.33 -92.71 -0.68 6.37 16 35 H 0.43 12.96 8.29 -92.71 -0.77 12.19 16 36 H 0.18 6.03 5.91 -2.91 -0.02 6.02 16 37 H 0.21 6.01 8.06 -2.91 -0.02 5.99 16 38 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 40 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.08 0.20 6.46 -2.39 -0.02 0.19 16 44 H 0.05 0.78 7.13 -2.39 -0.02 0.77 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.39 1.58 7.31 -74.05 -0.54 1.04 16 Total: -1.00 -69.42 385.18 0.65 -68.77 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.95 Total: 26.79 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.80 Total: 15.82 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -5.25 Total: -120.09 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.97 Total: -37.18 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.42 0.65 -68.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261243248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.163 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds