Wall clock time and date at job start Tue Mar 31 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50709 * 120.00218 * 2 1 4 4 N 1.46498 * 109.46724 * 125.00231 * 3 2 1 5 5 C 1.36735 * 127.13466 * 90.02834 * 4 3 2 6 6 C 1.50699 * 126.34780 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.46959 * 269.97107 * 6 5 4 8 8 C 1.53005 * 109.46964 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47039 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00019 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99950 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99879 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00038 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47150 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47541 * 119.99527 * 13 11 9 16 16 H 1.48500 * 109.47307 * 239.99800 * 13 11 9 17 17 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 18 18 N 1.28530 * 110.05622 * 0.02562 * 17 5 4 19 19 C 1.31221 * 109.85675 * 359.97438 * 18 17 5 20 20 N 1.38582 * 126.47333 * 179.97438 * 19 18 17 21 21 C 1.48557 * 110.99966 * 0.02562 * 20 19 18 22 22 C 1.54384 * 104.59479 * 200.95771 * 21 20 19 23 23 H 1.09000 * 117.60306 * 244.71574 * 22 21 20 24 24 C 1.54267 * 105.05832 * 23.85223 * 22 21 20 25 25 H 1.08998 * 121.78034 * 222.12996 * 24 22 21 26 26 C 1.48554 * 111.00065 * 244.58139 * 20 19 18 27 27 C 1.52997 * 118.12861 * 87.22735 * 22 21 20 28 28 F 1.39901 * 117.44527 * 15.97897 * 27 22 21 29 29 F 1.39892 * 117.44603 * 160.68827 * 27 22 21 30 30 H 1.08010 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.00327 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00174 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.46848 * 5.00766 * 3 2 1 34 34 H 1.08999 * 109.47187 * 245.00069 * 3 2 1 35 35 H 1.09000 * 109.47524 * 29.97774 * 6 5 4 36 36 H 1.09006 * 109.46931 * 149.97765 * 6 5 4 37 37 H 1.08997 * 109.47219 * 299.99958 * 7 6 5 38 38 H 1.09006 * 109.46761 * 60.00554 * 7 6 5 39 39 H 1.09002 * 109.46957 * 300.00458 * 8 7 6 40 40 H 1.08994 * 109.47121 * 60.00212 * 8 7 6 41 41 H 0.97001 * 119.99686 * 180.02562 * 12 11 9 42 42 H 1.09009 * 110.41109 * 319.73328 * 21 20 19 43 43 H 1.08999 * 110.41727 * 82.06050 * 21 20 19 44 44 H 1.08998 * 110.41594 * 277.81719 * 26 20 19 45 45 H 1.09003 * 110.41504 * 40.26375 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2914 0.9008 1.1435 6 6 5.0443 0.3014 -0.0162 7 6 4.8589 -1.2174 -0.0142 8 6 5.6239 -1.8260 -1.1913 9 6 5.4408 -3.3218 -1.1897 10 1 4.8394 -3.7914 -0.4254 11 6 6.0420 -4.0909 -2.1634 12 7 6.7747 -3.5191 -3.0939 13 14 5.8157 -5.9451 -2.1611 14 1 4.9534 -6.3371 -1.0174 15 1 5.1745 -6.3673 -3.4323 16 1 7.1395 -6.6053 -2.0313 17 7 4.7563 1.1044 2.3435 18 7 3.8475 1.6302 3.0849 19 6 2.7452 1.7920 2.3917 20 7 1.5533 2.3282 2.8527 21 6 1.6628 2.7188 4.2818 22 6 0.2037 2.7708 4.7837 23 1 -0.1885 3.7385 5.0967 24 6 -0.5811 1.8454 3.8312 25 1 -1.5637 2.1180 3.4462 26 6 0.4698 1.3122 2.8334 27 6 -0.4252 1.4785 5.3083 28 9 0.4375 0.4230 5.6230 29 9 -1.5551 1.5964 6.1247 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4026 -0.9314 35 1 4.6611 0.7130 -0.9499 36 1 6.1042 0.5382 0.0774 37 1 5.2422 -1.6289 0.9195 38 1 3.7990 -1.4541 -0.1078 39 1 5.2410 -1.4144 -2.1252 40 1 6.6836 -1.5892 -1.0973 41 1 7.1973 -4.0602 -3.7791 42 1 2.2296 1.9718 4.8377 43 1 2.1334 3.6976 4.3736 44 1 0.0403 1.2332 1.8348 45 1 0.8496 0.3449 3.1624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262981975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:21 Heat of formation + Delta-G solvation = 48.025537 kcal Electronic energy + Delta-G solvation = -29607.856695 eV Core-core repulsion = 25299.660600 eV Total energy + Delta-G solvation = -4308.196096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14347 -47.80791 -43.01004 -40.04454 -36.50628 -35.23027 -34.29343 -32.96861 -32.28783 -29.74898 -29.25980 -27.28912 -26.80989 -25.09820 -23.80235 -21.92437 -21.66458 -21.00601 -20.70720 -20.60273 -19.62681 -18.37463 -17.82695 -17.09699 -16.50037 -16.41916 -16.30646 -16.13908 -15.40617 -14.81226 -14.66956 -14.56354 -14.31315 -14.14992 -13.99003 -13.91475 -13.84687 -13.43733 -13.20090 -12.72835 -12.55890 -12.38514 -12.23492 -12.03278 -11.76349 -11.60119 -11.50262 -11.30910 -10.90526 -10.84604 -10.57849 -10.51806 -10.43349 -10.17527 -9.89669 -9.82828 -9.76645 -9.43764 -9.14924 -8.39512 -8.36880 -6.04550 -4.06812 1.54167 1.78795 2.23228 2.38034 2.55424 2.91733 3.28248 3.36347 3.40285 3.47192 3.51929 3.55285 4.10267 4.21450 4.39076 4.41667 4.45457 4.48795 4.59556 4.72642 4.82797 4.91033 5.00983 5.11730 5.13708 5.23165 5.28919 5.31812 5.34337 5.46330 5.55915 5.72857 5.80285 5.91663 6.02009 6.05510 6.22551 6.29789 6.49269 6.59204 6.71515 6.97852 7.06749 7.60962 7.73741 7.94683 8.36878 8.84816 8.99940 9.57693 11.06734 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002622 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.470931 B =10675.431004 C =11110.597833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.177 4.177 3 C 0.135 3.865 4 N -0.471 5.471 5 C 0.209 3.791 6 C -0.036 4.036 7 C -0.102 4.102 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.287 5.287 18 N -0.314 5.314 19 C 0.329 3.671 20 N -0.423 5.423 21 C 0.076 3.924 22 C -0.157 4.157 23 H 0.151 0.849 24 C -0.159 4.159 25 H 0.150 0.850 26 C 0.052 3.948 27 C 0.227 3.773 28 F -0.155 7.155 29 F -0.152 7.152 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.260 0.740 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.615 15.595 10.646 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C 0.012 3.988 4 N -0.165 5.165 5 C -0.058 4.058 6 C -0.076 4.076 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.558 4.558 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.126 5.126 18 N -0.158 5.158 19 C -0.028 4.028 20 N -0.147 5.147 21 C -0.051 4.051 22 C -0.177 4.177 23 H 0.169 0.831 24 C -0.179 4.179 25 H 0.168 0.832 26 C -0.074 4.074 27 C 0.190 3.810 28 F -0.135 7.135 29 F -0.132 7.132 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.648 16.038 11.336 26.404 hybrid contribution -1.024 -1.787 -0.595 2.144 sum -18.672 14.251 10.741 25.828 Atomic orbital electron populations 1.23958 0.95487 1.02545 0.98835 1.23355 0.96482 0.98719 1.01005 1.21028 0.92048 0.97297 0.88393 1.46209 1.12110 1.48215 1.09976 1.25349 0.81941 1.00090 0.98461 1.20387 0.99397 0.97632 0.90201 1.21686 1.00574 0.89815 1.02021 1.19100 0.95415 0.95259 0.91645 1.21241 1.30770 0.92165 1.11655 0.92721 1.25004 0.95191 0.98593 0.95568 1.69965 1.32864 1.35407 1.15146 0.86563 0.77988 0.85782 0.77849 1.19769 1.21028 1.20933 1.74042 1.22704 1.15701 1.00129 1.74546 0.97778 1.18775 1.24664 1.22453 0.94829 1.01570 0.83918 1.62326 1.00384 1.31666 1.20344 1.22581 0.93027 1.04564 0.84883 1.24820 0.96646 0.95811 1.00437 0.83118 1.24748 1.02169 1.01756 0.89229 0.83202 1.23092 0.89709 0.93968 1.00673 1.20065 0.81866 0.88524 0.90593 1.93066 1.68560 1.58030 1.93829 1.93050 1.50114 1.95923 1.74136 0.88065 0.87250 0.85471 0.88122 0.87151 0.90355 0.88332 0.92453 0.93542 0.96488 0.96142 0.93011 0.89614 0.87088 0.86871 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 12.21 29.02 0.35 -0.91 16 2 C -0.18 -1.75 9.20 -36.02 -0.33 -2.09 16 3 C 0.13 1.34 5.76 -5.19 -0.03 1.31 16 4 N -0.47 -6.36 2.79 -115.37 -0.32 -6.68 16 5 C 0.21 3.40 7.32 -154.02 -1.13 2.27 16 6 C -0.04 -0.59 5.59 -27.88 -0.16 -0.74 16 7 C -0.10 -2.00 5.14 -26.73 -0.14 -2.14 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 13 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.29 -5.35 12.18 32.99 0.40 -4.95 16 18 N -0.31 -5.39 10.98 30.32 0.33 -5.05 16 19 C 0.33 4.62 7.00 -318.87 -2.23 2.39 16 20 N -0.42 -4.48 5.42 -170.08 -0.92 -5.40 16 21 C 0.08 0.72 5.80 -2.18 -0.01 0.71 16 22 C -0.16 -1.10 7.11 -89.23 -0.63 -1.73 16 23 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 24 C -0.16 -1.09 7.11 -89.22 -0.63 -1.73 16 25 H 0.15 0.65 8.14 -51.93 -0.42 0.22 16 26 C 0.05 0.46 5.36 -2.17 -0.01 0.45 16 27 C 0.23 1.99 5.12 -26.73 -0.14 1.85 16 28 F -0.15 -1.80 16.22 2.25 0.04 -1.76 16 29 F -0.15 -1.39 17.60 2.25 0.04 -1.35 16 30 H 0.10 0.54 7.21 -52.48 -0.38 0.17 16 31 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.13 1.57 6.62 -52.48 -0.35 1.22 16 33 H 0.10 0.79 7.71 -51.93 -0.40 0.39 16 34 H 0.11 1.02 7.25 -51.93 -0.38 0.64 16 35 H 0.08 1.11 7.27 -51.93 -0.38 0.73 16 36 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.87 6.71 -51.93 -0.35 0.52 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.09 1.01 6.94 -51.92 -0.36 0.65 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.11 0.83 4.07 -51.93 -0.21 0.62 16 45 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -33.00 373.94 -10.83 -43.83 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.11 Total: -2.04 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -5.64 Total: -13.06 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.23 Total: -47.61 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.00 -10.83 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262981975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.860 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds