Wall clock time and date at job start Tue Mar 31 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50709 * 120.00218 * 2 1 4 4 N 1.46498 * 109.46724 * 125.00231 * 3 2 1 5 5 C 1.36735 * 127.13466 * 90.02834 * 4 3 2 6 6 C 1.50699 * 126.34780 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.46959 * 269.97107 * 6 5 4 8 8 C 1.53005 * 109.46964 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47039 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00019 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99950 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99879 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00038 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47150 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47541 * 119.99527 * 13 11 9 16 16 H 1.48500 * 109.47307 * 239.99800 * 13 11 9 17 17 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 18 18 N 1.28530 * 110.05622 * 0.02562 * 17 5 4 19 19 C 1.31221 * 109.85675 * 359.97438 * 18 17 5 20 20 N 1.38582 * 126.47333 * 179.97438 * 19 18 17 21 21 C 1.48557 * 110.99966 * 0.02562 * 20 19 18 22 22 C 1.54384 * 104.59479 * 200.95771 * 21 20 19 23 23 H 1.09000 * 117.60306 * 244.71574 * 22 21 20 24 24 C 1.54267 * 105.05832 * 23.85223 * 22 21 20 25 25 H 1.08998 * 121.78034 * 222.12996 * 24 22 21 26 26 C 1.48554 * 111.00065 * 244.58139 * 20 19 18 27 27 C 1.52997 * 118.12861 * 87.22735 * 22 21 20 28 28 F 1.39901 * 117.44527 * 15.97897 * 27 22 21 29 29 F 1.39892 * 117.44603 * 160.68827 * 27 22 21 30 30 H 1.08010 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.00327 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00174 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.46848 * 5.00766 * 3 2 1 34 34 H 1.08999 * 109.47187 * 245.00069 * 3 2 1 35 35 H 1.09000 * 109.47524 * 29.97774 * 6 5 4 36 36 H 1.09006 * 109.46931 * 149.97765 * 6 5 4 37 37 H 1.08997 * 109.47219 * 299.99958 * 7 6 5 38 38 H 1.09006 * 109.46761 * 60.00554 * 7 6 5 39 39 H 1.09002 * 109.46957 * 300.00458 * 8 7 6 40 40 H 1.08994 * 109.47121 * 60.00212 * 8 7 6 41 41 H 0.97001 * 119.99686 * 180.02562 * 12 11 9 42 42 H 1.09009 * 110.41109 * 319.73328 * 21 20 19 43 43 H 1.08999 * 110.41727 * 82.06050 * 21 20 19 44 44 H 1.08998 * 110.41594 * 277.81719 * 26 20 19 45 45 H 1.09003 * 110.41504 * 40.26375 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2914 0.9008 1.1435 6 6 5.0443 0.3014 -0.0162 7 6 4.8589 -1.2174 -0.0142 8 6 5.6239 -1.8260 -1.1913 9 6 5.4408 -3.3218 -1.1897 10 1 4.8394 -3.7914 -0.4254 11 6 6.0420 -4.0909 -2.1634 12 7 6.7747 -3.5191 -3.0939 13 14 5.8157 -5.9451 -2.1611 14 1 4.9534 -6.3371 -1.0174 15 1 5.1745 -6.3673 -3.4323 16 1 7.1395 -6.6053 -2.0313 17 7 4.7563 1.1044 2.3435 18 7 3.8475 1.6302 3.0849 19 6 2.7452 1.7920 2.3917 20 7 1.5533 2.3282 2.8527 21 6 1.6628 2.7188 4.2818 22 6 0.2037 2.7708 4.7837 23 1 -0.1885 3.7385 5.0967 24 6 -0.5811 1.8454 3.8312 25 1 -1.5637 2.1180 3.4462 26 6 0.4698 1.3122 2.8334 27 6 -0.4252 1.4785 5.3083 28 9 0.4375 0.4230 5.6230 29 9 -1.5551 1.5964 6.1247 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4026 -0.9314 35 1 4.6611 0.7130 -0.9499 36 1 6.1042 0.5382 0.0774 37 1 5.2422 -1.6289 0.9195 38 1 3.7990 -1.4541 -0.1078 39 1 5.2410 -1.4144 -2.1252 40 1 6.6836 -1.5892 -1.0973 41 1 7.1973 -4.0602 -3.7791 42 1 2.2296 1.9718 4.8377 43 1 2.1334 3.6976 4.3736 44 1 0.0403 1.2332 1.8348 45 1 0.8496 0.3449 3.1624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262981975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:21 Heat of formation + Delta-G solvation = 30.980159 kcal Electronic energy + Delta-G solvation = -29608.595838 eV Core-core repulsion = 25299.660600 eV Total energy + Delta-G solvation = -4308.935239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.84842 -48.53129 -44.16019 -40.80517 -37.45815 -36.65324 -35.42817 -34.35287 -33.68937 -31.19957 -30.04206 -28.71904 -27.80691 -26.03229 -25.54754 -22.86637 -22.56268 -22.13279 -21.89736 -21.50636 -20.65708 -19.03158 -18.77632 -18.43656 -17.83687 -17.51243 -17.21191 -17.01868 -16.55049 -16.31434 -15.68979 -15.61392 -15.44588 -15.22212 -14.92612 -14.73964 -14.69065 -14.44593 -14.11055 -13.93050 -13.85652 -13.45681 -13.36062 -13.27765 -12.94200 -12.73510 -12.67454 -12.60727 -12.44020 -12.40900 -12.09233 -11.64639 -11.53657 -11.47388 -11.26368 -11.20491 -11.03714 -10.79008 -10.55069 -10.50573 -9.53746 -8.20409 -6.30200 0.55771 0.86492 1.38157 1.40013 1.42649 1.51841 1.63752 1.79992 1.84636 2.40378 2.63451 2.86983 2.90171 3.13309 3.31225 3.44760 3.53359 3.65044 3.76481 3.84752 3.91203 3.99007 4.02274 4.14866 4.27486 4.34112 4.41272 4.49817 4.51973 4.59215 4.67666 4.74180 4.81105 4.83702 4.92954 5.02334 5.07076 5.14305 5.16629 5.35342 5.49786 5.54292 5.63809 5.74228 5.85433 6.01908 6.25309 6.85696 7.38597 7.63694 8.91234 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002622 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.470931 B =10675.431004 C =11110.597833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.208 4.208 3 C 0.130 3.870 4 N -0.465 5.465 5 C 0.200 3.800 6 C -0.024 4.024 7 C -0.084 4.084 8 C 0.029 3.971 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.958 3.042 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.280 1.280 17 N -0.326 5.326 18 N -0.351 5.351 19 C 0.343 3.657 20 N -0.412 5.412 21 C 0.069 3.931 22 C -0.138 4.138 23 H 0.187 0.813 24 C -0.137 4.137 25 H 0.190 0.810 26 C 0.050 3.950 27 C 0.200 3.800 28 F -0.180 7.180 29 F -0.154 7.154 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.007 0.993 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.057 0.943 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.933 16.751 10.221 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.227 4.227 3 C 0.010 3.990 4 N -0.158 5.158 5 C -0.068 4.068 6 C -0.064 4.064 7 C -0.123 4.123 8 C -0.008 4.008 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.206 1.206 17 N -0.165 5.165 18 N -0.195 5.195 19 C -0.014 4.014 20 N -0.136 5.136 21 C -0.058 4.058 22 C -0.157 4.157 23 H 0.204 0.796 24 C -0.157 4.157 25 H 0.207 0.793 26 C -0.076 4.076 27 C 0.163 3.837 28 F -0.161 7.161 29 F -0.135 7.135 30 H 0.152 0.848 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.153 0.847 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.988 17.196 10.910 29.244 hybrid contribution -0.076 -2.136 -0.436 2.181 sum -21.064 15.060 10.474 27.932 Atomic orbital electron populations 1.24249 0.94466 1.04344 0.94727 1.23120 0.97365 0.97402 1.04826 1.21365 0.92022 0.98335 0.87277 1.46365 1.11569 1.47174 1.10706 1.25095 0.83256 1.00771 0.97723 1.20153 0.99525 0.95124 0.91572 1.21367 1.00020 0.92086 0.98776 1.18967 0.94467 0.94341 0.93054 1.21656 1.30758 0.93908 1.11654 0.92917 1.25863 0.94819 1.03506 0.95168 1.70073 1.33696 1.37281 1.15840 0.85505 0.78061 0.79868 0.78269 1.19114 1.19988 1.20558 1.73936 1.24320 1.16947 1.01281 1.74451 0.98917 1.20600 1.25540 1.22798 0.95177 0.99618 0.83827 1.62498 0.99085 1.31286 1.20776 1.22654 0.94848 1.04174 0.84077 1.24869 0.94737 0.96541 0.99600 0.79624 1.24883 1.03093 1.00204 0.87496 0.79298 1.23175 0.89606 0.92370 1.02451 1.20465 0.82139 0.89001 0.92056 1.93014 1.69498 1.59399 1.94146 1.93040 1.50100 1.95920 1.74395 0.84802 0.86748 0.88763 0.85171 0.86572 0.87973 0.88843 0.94421 0.92724 0.97477 0.98589 0.92713 0.92482 0.85956 0.84747 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 12.21 67.79 0.83 -0.78 16 2 C -0.21 -3.80 9.20 25.66 0.24 -3.57 16 3 C 0.13 2.32 5.76 85.64 0.49 2.81 16 4 N -0.46 -12.25 2.79 -518.91 -1.45 -13.70 16 5 C 0.20 6.66 7.32 137.64 1.01 7.66 16 6 C -0.02 -0.80 5.59 29.85 0.17 -0.63 16 7 C -0.08 -3.39 5.14 30.60 0.16 -3.24 16 8 C 0.03 1.46 4.97 29.85 0.15 1.61 16 9 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 10 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 13 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 N -0.33 -12.63 12.18 -49.54 -0.60 -13.24 16 18 N -0.35 -12.43 10.98 -58.00 -0.64 -13.07 16 19 C 0.34 9.49 7.00 260.11 1.82 11.31 16 20 N -0.41 -7.93 5.42 -692.01 -3.75 -11.68 16 21 C 0.07 1.22 5.80 86.45 0.50 1.72 16 22 C -0.14 -1.52 7.11 -9.89 -0.07 -1.59 16 23 H 0.19 0.79 8.14 -2.39 -0.02 0.77 16 24 C -0.14 -1.39 7.11 -9.89 -0.07 -1.46 16 25 H 0.19 0.51 8.14 -2.39 -0.02 0.50 16 26 C 0.05 0.77 5.36 86.46 0.46 1.23 16 27 C 0.20 3.16 5.12 30.59 0.16 3.32 16 28 F -0.18 -4.26 16.22 44.97 0.73 -3.53 16 29 F -0.15 -2.51 17.60 44.97 0.79 -1.72 16 30 H 0.13 0.69 7.21 -2.91 -0.02 0.67 16 31 H 0.11 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.09 2.37 6.62 -2.91 -0.02 2.35 16 33 H 0.13 1.53 7.71 -2.39 -0.02 1.51 16 34 H 0.12 1.92 7.25 -2.39 -0.02 1.90 16 35 H 0.10 2.85 7.27 -2.39 -0.02 2.84 16 36 H 0.09 3.17 8.14 -2.38 -0.02 3.16 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 2.11 6.71 -2.38 -0.02 2.09 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.06 1.38 6.94 -2.38 -0.02 1.36 16 43 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.13 1.43 4.07 -2.39 -0.01 1.42 16 45 H 0.04 0.92 7.48 -2.39 -0.02 0.90 16 Total: -1.00 -75.45 373.94 4.94 -70.51 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.01 Total: 6.55 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 6.53 Total: -11.15 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -6.15 Total: -106.77 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.52 Total: -5.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.45 4.94 -70.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262981975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.492 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds