Wall clock time and date at job start Tue Mar 31 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47433 * 2 1 4 4 N 1.29934 * 125.37813 * 90.00245 * 3 2 1 5 5 C 1.36068 * 108.47988 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.44801 * 179.97438 * 5 4 3 7 7 O 1.21610 * 119.99749 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00348 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99886 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46762 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47333 * 65.00034 * 10 9 8 12 12 C 1.53001 * 109.47193 * 184.99701 * 10 9 8 13 13 N 1.46903 * 109.47238 * 304.99740 * 10 9 8 14 14 C 1.46904 * 111.00120 * 155.00400 * 13 10 9 15 15 C 1.50695 * 109.47034 * 180.02562 * 14 13 10 16 16 O 1.21296 * 120.00214 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00139 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00105 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00006 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00040 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00076 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47016 * 90.00424 * 22 20 18 24 24 H 1.48496 * 109.46856 * 210.00479 * 22 20 18 25 25 H 1.48497 * 109.47004 * 330.00289 * 22 20 18 26 26 C 1.36086 * 107.10082 * 359.97438 * 5 4 3 27 27 C 1.50697 * 126.52702 * 180.02562 * 26 5 4 28 28 O 1.34047 * 125.38025 * 269.95757 * 3 2 1 29 29 H 1.09000 * 109.46707 * 59.99682 * 1 2 3 30 30 H 1.08996 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46783 * 300.00058 * 1 2 3 32 32 H 1.09004 * 109.47221 * 239.99775 * 2 1 3 33 33 H 1.09000 * 109.46707 * 120.00318 * 2 1 3 34 34 H 0.96999 * 119.99524 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46769 * 299.99722 * 9 8 6 36 36 H 1.09000 * 109.47350 * 59.99852 * 9 8 6 37 37 H 1.08999 * 109.47187 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47464 * 300.00213 * 12 10 9 39 39 H 1.09003 * 109.46709 * 59.99951 * 12 10 9 40 40 H 1.00895 * 110.99816 * 31.04342 * 13 10 9 41 41 H 1.09009 * 109.46523 * 299.99901 * 14 13 10 42 42 H 1.08996 * 109.47066 * 59.99812 * 14 13 10 43 43 H 0.96999 * 120.00063 * 359.97438 * 17 15 14 44 44 H 0.96999 * 120.00173 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47276 * 179.97438 * 27 26 5 46 46 H 1.08994 * 109.47315 * 299.95510 * 27 26 5 47 47 H 1.09004 * 109.47066 * 59.94956 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7178 3.3572 0.6639 6 6 3.1118 4.4723 1.5439 7 8 3.4841 5.5249 1.0620 8 7 3.0594 4.3253 2.8827 9 6 3.4505 5.4337 3.7572 10 6 3.3001 5.0075 5.2188 11 1 4.0047 4.2051 5.4377 12 6 3.5883 6.2019 6.1306 13 7 1.9296 4.5328 5.4521 14 6 1.8815 3.5992 6.5852 15 6 0.4631 3.1344 6.7932 16 8 -0.4208 3.5412 6.0690 17 7 0.1768 2.2666 7.7838 18 6 -1.1134 1.8433 7.9727 19 1 -1.9005 2.2056 7.3279 20 6 -1.4087 0.9491 8.9944 21 7 -2.6455 0.5437 9.1757 22 14 -0.0475 0.3230 10.1101 23 1 0.0900 1.2284 11.2791 24 1 -0.3829 -1.0451 10.5803 25 1 1.2323 0.2879 9.3578 26 6 2.7202 3.3615 -0.6970 27 6 3.1263 4.5057 -1.5896 28 8 2.2919 2.1522 -1.0929 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7628 3.4856 3.2671 35 1 4.4890 5.7014 3.5621 36 1 2.8105 6.2941 3.5615 37 1 3.4807 5.8984 7.1719 38 1 4.6052 6.5541 5.9576 39 1 2.8837 7.0043 5.9118 40 1 1.5464 4.1111 4.6194 41 1 2.5180 2.7396 6.3749 42 1 2.2352 4.1018 7.4854 43 1 0.8837 1.9409 8.3627 44 1 -2.8516 -0.0808 9.8887 45 1 3.0218 4.2075 -2.6328 46 1 2.4863 5.3655 -1.3920 47 1 4.1643 4.7718 -1.3896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265838990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:33 Heat of formation + Delta-G solvation = -53.221681 kcal Electronic energy + Delta-G solvation = -29123.141778 eV Core-core repulsion = 24921.642790 eV Total energy + Delta-G solvation = -4201.498989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.69612 -39.80666 -38.55781 -37.06871 -35.32307 -34.35219 -34.16347 -33.74227 -31.90860 -31.68427 -30.98637 -27.89809 -26.79350 -26.16786 -24.53433 -23.75419 -22.95398 -21.49039 -20.72346 -20.37524 -19.40900 -18.51364 -18.07067 -17.24367 -16.50374 -16.18464 -16.05715 -15.53669 -15.38711 -14.98556 -14.88959 -14.74760 -14.53447 -14.09527 -13.79208 -13.68880 -13.48519 -13.19568 -12.91398 -12.86235 -12.72221 -12.66225 -12.64786 -12.19077 -12.03983 -12.02375 -11.82412 -11.58311 -11.51693 -11.42541 -11.19678 -10.99191 -10.92410 -10.59584 -10.32285 -9.97254 -9.56944 -9.32596 -8.94704 -8.58903 -8.22414 -8.16464 -6.30708 -3.82019 0.84988 1.77839 2.19079 2.90839 3.02248 3.06882 3.13217 3.14887 3.59068 3.74302 4.01944 4.10642 4.29917 4.49782 4.62237 4.66955 4.77964 4.81714 4.91764 4.98823 5.09212 5.18784 5.19318 5.21555 5.22891 5.46929 5.48825 5.56960 5.57219 5.61609 5.66115 5.68996 5.71275 5.82075 5.83596 5.91528 5.92706 5.95709 6.15167 6.30241 7.04827 7.12514 7.40565 7.50333 7.58554 7.97292 8.14974 8.60259 8.95540 9.42863 9.83295 10.82490 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.002923 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.350241 B = 9576.299236 C =11817.575541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.026 4.026 3 C 0.199 3.801 4 N -0.455 5.455 5 C -0.078 4.078 6 C 0.607 3.393 7 O -0.536 6.536 8 N -0.714 5.714 9 C 0.118 3.882 10 C 0.071 3.929 11 H 0.049 0.951 12 C -0.137 4.137 13 N -0.664 5.664 14 C 0.046 3.954 15 C 0.450 3.550 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.038 3.962 27 C -0.066 4.066 28 O -0.196 6.196 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.408 0.592 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.350 0.650 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.499 2.070 -17.868 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.064 4.064 3 C -0.010 4.010 4 N -0.184 5.184 5 C -0.198 4.198 6 C 0.393 3.607 7 O -0.413 6.413 8 N -0.366 5.366 9 C -0.005 4.005 10 C -0.039 4.039 11 H 0.067 0.933 12 C -0.196 4.196 13 N -0.300 5.300 14 C -0.086 4.086 15 C 0.235 3.765 16 O -0.444 6.444 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.018 4.018 27 C -0.123 4.123 28 O -0.083 6.083 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.244 0.756 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.749 3.309 -17.576 23.830 hybrid contribution 1.223 -1.713 0.312 2.128 sum 16.972 1.596 -17.264 24.262 Atomic orbital electron populations 1.21817 0.92611 1.03386 1.03340 1.20152 0.97267 0.83619 1.05373 1.26290 0.99747 0.96886 0.78056 1.70764 1.15234 1.02428 1.29968 1.21445 1.11413 0.94677 0.92259 1.16624 0.77324 0.85085 0.81668 1.90794 1.48028 1.27138 1.75358 1.45821 1.67280 1.17932 1.05587 1.21668 1.01180 0.89741 0.87916 1.21820 0.90424 0.98176 0.93514 0.93270 1.21736 1.00948 0.97496 0.99401 1.60136 1.18131 1.42622 1.09067 1.21792 0.96432 0.94579 0.95828 1.19686 0.89683 0.83191 0.83891 1.90578 1.48062 1.58524 1.47260 1.42196 1.09605 1.41441 1.29766 1.19430 0.84260 1.23962 1.15621 0.86297 1.25034 0.96472 0.97133 0.97516 1.69620 1.17622 1.32765 1.32183 0.86672 0.81646 0.79570 0.81494 1.19612 1.20211 1.19530 1.23701 0.97876 0.85758 0.94480 1.20447 1.03655 0.91298 0.96876 1.84332 1.63736 1.22224 1.38054 0.92210 0.90583 0.91163 0.88801 0.87229 0.75554 0.90533 0.89974 0.91993 0.92422 0.91392 0.82811 0.93688 0.89256 0.79716 0.91630 0.90325 0.88188 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.03 -0.20 6.56 -27.89 -0.18 -0.38 16 3 C 0.20 2.25 7.56 -13.08 -0.10 2.15 16 4 N -0.45 -6.16 11.06 -7.66 -0.08 -6.24 16 5 C -0.08 -1.05 6.99 -83.02 -0.58 -1.63 16 6 C 0.61 8.50 7.81 -12.52 -0.10 8.40 16 7 O -0.54 -8.10 15.61 5.27 0.08 -8.01 16 8 N -0.71 -9.16 4.99 -61.39 -0.31 -9.47 16 9 C 0.12 1.37 5.31 -4.04 -0.02 1.35 16 10 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16 11 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 12 C -0.14 -1.42 9.42 37.16 0.35 -1.07 16 13 N -0.66 -10.31 5.93 -107.99 -0.64 -10.95 16 14 C 0.05 0.76 5.97 -4.98 -0.03 0.73 16 15 C 0.45 10.24 7.82 -10.99 -0.09 10.15 16 16 O -0.56 -15.25 15.78 5.54 0.09 -15.17 16 17 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16 18 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.78 13.96 55.50 0.77 -25.00 16 22 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 26 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 27 C -0.07 -0.55 9.13 36.00 0.33 -0.22 16 28 O -0.20 -2.20 10.73 6.51 0.07 -2.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.41 5.32 7.10 -40.82 -0.29 5.03 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.35 5.86 6.41 -39.29 -0.25 5.61 16 41 H 0.05 0.65 8.06 -51.92 -0.42 0.23 16 42 H 0.09 1.31 7.43 -51.93 -0.39 0.92 16 43 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 47 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -35.23 397.24 -6.55 -41.78 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -7.00 Total: 16.98 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -0.75 Total: 11.73 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.31 Total: -65.77 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.24 Total: -25.31 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.23 -6.55 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265838990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.441 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds