Wall clock time and date at job start Tue Mar 31 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47433 * 2 1 4 4 N 1.29934 * 125.37813 * 90.00245 * 3 2 1 5 5 C 1.36068 * 108.47988 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.44801 * 179.97438 * 5 4 3 7 7 O 1.21610 * 119.99749 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00348 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99886 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46762 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.47333 * 65.00034 * 10 9 8 12 12 C 1.53001 * 109.47193 * 184.99701 * 10 9 8 13 13 N 1.46903 * 109.47238 * 304.99740 * 10 9 8 14 14 C 1.46904 * 111.00120 * 155.00400 * 13 10 9 15 15 C 1.50695 * 109.47034 * 180.02562 * 14 13 10 16 16 O 1.21296 * 120.00214 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00139 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00105 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00006 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00040 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00076 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47016 * 90.00424 * 22 20 18 24 24 H 1.48496 * 109.46856 * 210.00479 * 22 20 18 25 25 H 1.48497 * 109.47004 * 330.00289 * 22 20 18 26 26 C 1.36086 * 107.10082 * 359.97438 * 5 4 3 27 27 C 1.50697 * 126.52702 * 180.02562 * 26 5 4 28 28 O 1.34047 * 125.38025 * 269.95757 * 3 2 1 29 29 H 1.09000 * 109.46707 * 59.99682 * 1 2 3 30 30 H 1.08996 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46783 * 300.00058 * 1 2 3 32 32 H 1.09004 * 109.47221 * 239.99775 * 2 1 3 33 33 H 1.09000 * 109.46707 * 120.00318 * 2 1 3 34 34 H 0.96999 * 119.99524 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46769 * 299.99722 * 9 8 6 36 36 H 1.09000 * 109.47350 * 59.99852 * 9 8 6 37 37 H 1.08999 * 109.47187 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47464 * 300.00213 * 12 10 9 39 39 H 1.09003 * 109.46709 * 59.99951 * 12 10 9 40 40 H 1.00895 * 110.99816 * 31.04342 * 13 10 9 41 41 H 1.09009 * 109.46523 * 299.99901 * 14 13 10 42 42 H 1.08996 * 109.47066 * 59.99812 * 14 13 10 43 43 H 0.96999 * 120.00063 * 359.97438 * 17 15 14 44 44 H 0.96999 * 120.00173 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47276 * 179.97438 * 27 26 5 46 46 H 1.08994 * 109.47315 * 299.95510 * 27 26 5 47 47 H 1.09004 * 109.47066 * 59.94956 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7178 3.3572 0.6639 6 6 3.1118 4.4723 1.5439 7 8 3.4841 5.5249 1.0620 8 7 3.0594 4.3253 2.8827 9 6 3.4505 5.4337 3.7572 10 6 3.3001 5.0075 5.2188 11 1 4.0047 4.2051 5.4377 12 6 3.5883 6.2019 6.1306 13 7 1.9296 4.5328 5.4521 14 6 1.8815 3.5992 6.5852 15 6 0.4631 3.1344 6.7932 16 8 -0.4208 3.5412 6.0690 17 7 0.1768 2.2666 7.7838 18 6 -1.1134 1.8433 7.9727 19 1 -1.9005 2.2056 7.3279 20 6 -1.4087 0.9491 8.9944 21 7 -2.6455 0.5437 9.1757 22 14 -0.0475 0.3230 10.1101 23 1 0.0900 1.2284 11.2791 24 1 -0.3829 -1.0451 10.5803 25 1 1.2323 0.2879 9.3578 26 6 2.7202 3.3615 -0.6970 27 6 3.1263 4.5057 -1.5896 28 8 2.2919 2.1522 -1.0929 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7628 3.4856 3.2671 35 1 4.4890 5.7014 3.5621 36 1 2.8105 6.2941 3.5615 37 1 3.4807 5.8984 7.1719 38 1 4.6052 6.5541 5.9576 39 1 2.8837 7.0043 5.9118 40 1 1.5464 4.1111 4.6194 41 1 2.5180 2.7396 6.3749 42 1 2.2352 4.1018 7.4854 43 1 0.8837 1.9409 8.3627 44 1 -2.8516 -0.0808 9.8887 45 1 3.0218 4.2075 -2.6328 46 1 2.4863 5.3655 -1.3920 47 1 4.1643 4.7718 -1.3896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265838990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:32 Heat of formation + Delta-G solvation = -83.891810 kcal Electronic energy + Delta-G solvation = -29124.471735 eV Core-core repulsion = 24921.642790 eV Total energy + Delta-G solvation = -4202.828945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.58045 -40.87669 -40.27786 -38.27124 -36.20587 -36.02733 -35.12624 -34.99209 -33.75206 -32.64601 -32.13320 -28.74800 -28.26242 -27.18310 -25.65444 -25.19315 -23.78602 -22.36662 -21.72723 -21.36595 -21.25059 -20.32478 -19.18766 -18.13703 -17.86821 -17.23070 -17.13499 -16.90709 -16.74363 -16.45040 -15.82451 -15.71417 -15.63091 -15.41233 -15.01827 -14.84391 -14.51455 -14.42252 -14.20985 -14.17672 -13.66130 -13.65451 -13.53797 -13.37864 -13.35202 -12.97744 -12.82983 -12.67816 -12.57591 -12.41494 -12.40710 -12.11229 -11.97406 -11.92708 -11.89075 -11.51601 -11.35032 -10.45040 -10.33354 -10.24999 -9.84340 -9.41126 -8.41135 -6.02235 -0.06192 0.84812 1.30422 1.36214 1.36642 1.44981 1.93349 1.95847 2.11888 2.23370 2.66770 2.78029 3.14965 3.32592 3.48522 3.58247 3.69817 4.02396 4.09381 4.16913 4.18273 4.18746 4.30518 4.33265 4.40347 4.49388 4.53689 4.54195 4.59385 4.77181 4.83618 4.90844 4.94008 4.95480 5.00193 5.04746 5.04851 5.20320 5.28547 5.45320 5.52921 5.88766 6.01574 6.14342 6.25989 6.45990 6.59499 6.87958 6.93635 7.39262 7.96176 8.76655 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.002923 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.350241 B = 9576.299236 C =11817.575541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.199 3.801 4 N -0.485 5.485 5 C -0.111 4.111 6 C 0.603 3.397 7 O -0.554 6.554 8 N -0.712 5.712 9 C 0.121 3.879 10 C 0.077 3.923 11 H 0.071 0.929 12 C -0.135 4.135 13 N -0.684 5.684 14 C 0.060 3.940 15 C 0.447 3.553 16 O -0.615 6.615 17 N -0.589 5.589 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.230 1.230 26 C 0.044 3.956 27 C -0.064 4.064 28 O -0.194 6.194 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.407 0.593 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.339 0.661 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.257 1.196 -17.505 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 C -0.010 4.010 4 N -0.214 5.214 5 C -0.229 4.229 6 C 0.389 3.611 7 O -0.433 6.433 8 N -0.363 5.363 9 C -0.002 4.002 10 C -0.032 4.032 11 H 0.089 0.911 12 C -0.194 4.194 13 N -0.319 5.319 14 C -0.072 4.072 15 C 0.235 3.765 16 O -0.500 6.500 17 N -0.231 5.231 18 C -0.458 4.458 19 H 0.071 0.929 20 C -0.213 4.213 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.153 1.153 26 C -0.013 4.013 27 C -0.120 4.120 28 O -0.082 6.082 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.243 0.757 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.541 2.455 -17.202 26.149 hybrid contribution -0.064 -1.390 0.082 1.394 sum 19.477 1.065 -17.120 25.953 Atomic orbital electron populations 1.21798 0.92894 1.04303 1.01905 1.20389 0.96820 0.81799 1.07205 1.27050 0.98572 0.97777 0.77640 1.70729 1.16531 1.02930 1.31231 1.21554 1.13277 0.94928 0.93188 1.16783 0.77130 0.85097 0.82068 1.90766 1.49103 1.27741 1.75681 1.45852 1.66878 1.18114 1.05450 1.21715 1.01746 0.88863 0.87840 1.21906 0.88563 0.99168 0.93580 0.91117 1.21748 1.02179 0.96407 0.99017 1.60164 1.20878 1.42432 1.08410 1.21731 0.91663 0.96284 0.97495 1.20978 0.92060 0.81365 0.82069 1.90557 1.50666 1.59888 1.48840 1.42005 1.08305 1.42009 1.30761 1.18995 0.85222 1.25641 1.15943 0.92860 1.26126 0.99909 0.96426 0.98880 1.69805 1.20842 1.33567 1.33328 0.85357 0.78696 0.78584 0.78830 1.18175 1.19998 1.15320 1.24262 0.96362 0.86283 0.94401 1.20580 1.03637 0.89983 0.97839 1.84358 1.63666 1.22165 1.37980 0.92044 0.88486 0.94149 0.85638 0.86654 0.75710 0.88774 0.91459 0.91779 0.89759 0.92786 0.84048 0.90333 0.86326 0.77422 0.91125 0.87623 0.88459 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.02 -0.34 6.56 29.85 0.20 -0.15 16 3 C 0.20 4.42 7.56 88.39 0.67 5.09 16 4 N -0.48 -13.32 11.06 -293.05 -3.24 -16.56 16 5 C -0.11 -3.02 6.99 40.40 0.28 -2.74 16 6 C 0.60 17.04 7.81 86.66 0.68 17.72 16 7 O -0.55 -16.78 15.61 -4.06 -0.06 -16.84 16 8 N -0.71 -18.11 4.99 -466.37 -2.33 -20.43 16 9 C 0.12 2.66 5.31 86.38 0.46 3.12 16 10 C 0.08 1.60 2.81 44.91 0.13 1.73 16 11 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 12 C -0.14 -2.41 9.42 71.98 0.68 -1.74 16 13 N -0.68 -20.39 5.93 -495.56 -2.94 -23.33 16 14 C 0.06 1.83 5.97 85.55 0.51 2.34 16 15 C 0.45 20.38 7.82 87.66 0.69 21.07 16 16 O -0.62 -34.85 15.78 -3.08 -0.05 -34.90 16 17 N -0.59 -27.82 5.09 -306.99 -1.56 -29.38 16 18 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 19 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 20 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.93 -56.53 13.96 21.66 0.30 -56.23 16 22 Si 0.97 38.55 27.74 68.60 1.90 40.46 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 26 C 0.04 1.00 7.44 25.18 0.19 1.18 16 27 C -0.06 -0.99 9.13 71.23 0.65 -0.34 16 28 O -0.19 -4.20 10.73 0.37 0.00 -4.19 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 10.58 7.10 -92.71 -0.66 9.92 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.34 11.40 6.41 -89.70 -0.58 10.82 16 41 H 0.08 1.92 8.06 -2.38 -0.02 1.90 16 42 H 0.12 2.97 7.43 -2.39 -0.02 2.96 16 43 H 0.39 15.11 5.76 -92.71 -0.53 14.57 16 44 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 47 H 0.10 1.53 8.08 -2.38 -0.02 1.51 16 Total: -1.00 -83.56 397.24 -1.62 -85.17 By element: Atomic # 1 Polarization: 50.25 SS G_CDS: -0.80 Total: 49.45 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 7.15 Total: 26.80 kcal Atomic # 7 Polarization: -136.18 SS G_CDS: -9.76 Total: -145.94 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.11 Total: -55.94 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.46 kcal Total: -83.56 -1.62 -85.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265838990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.281 kcal (2) G-P(sol) polarization free energy of solvation -83.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds