Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47080 * 2 1 4 4 N 1.29944 * 125.37782 * 90.27448 * 3 2 1 5 5 C 1.36063 * 108.47570 * 180.18878 * 4 3 2 6 6 C 1.47422 * 126.44829 * 179.85784 * 5 4 3 7 7 O 1.21606 * 120.00183 * 179.69187 * 6 5 4 8 8 N 1.34776 * 119.99889 * 359.69498 * 6 5 4 9 9 C 1.46496 * 119.99923 * 179.72056 * 8 6 5 10 10 C 1.53002 * 109.47109 * 180.27691 * 9 8 6 11 11 N 1.46900 * 109.47257 * 174.88626 * 10 9 8 12 12 C 1.46897 * 111.00194 * 199.54561 * 11 10 9 13 13 C 1.52992 * 109.47289 * 76.02636 * 12 11 10 14 14 C 1.46898 * 110.99810 * 75.59007 * 11 10 9 15 15 C 1.50699 * 109.47143 * 189.99754 * 14 11 10 16 16 O 1.21287 * 120.00185 * 0.02562 * 15 14 11 17 17 N 1.34777 * 120.00289 * 179.97438 * 15 14 11 18 18 C 1.37095 * 120.00247 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99838 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99869 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99649 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47254 * 60.00311 * 22 20 18 24 24 H 1.48507 * 109.47016 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47262 * 299.99862 * 22 20 18 26 26 C 1.36086 * 107.10376 * 359.60324 * 5 4 3 27 27 O 1.34045 * 125.38040 * 270.02882 * 3 2 1 28 28 H 1.08999 * 109.47545 * 299.99970 * 1 2 3 29 29 H 1.09000 * 109.47317 * 59.99747 * 1 2 3 30 30 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47030 * 240.00132 * 2 1 3 32 32 H 1.08999 * 109.47208 * 119.99712 * 2 1 3 33 33 H 0.97004 * 119.99961 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47409 * 300.27232 * 9 8 6 35 35 H 1.08990 * 109.47414 * 60.27657 * 9 8 6 36 36 H 1.09002 * 109.46790 * 294.88919 * 10 9 8 37 37 H 1.09001 * 109.47415 * 54.88957 * 10 9 8 38 38 H 1.09004 * 109.47079 * 196.02879 * 12 11 10 39 39 H 1.09006 * 109.46931 * 316.02756 * 12 11 10 40 40 H 1.08997 * 109.47344 * 294.87164 * 13 12 11 41 41 H 1.09002 * 109.47158 * 54.87474 * 13 12 11 42 42 H 1.09002 * 109.47328 * 174.87192 * 13 12 11 43 43 H 1.08997 * 109.47492 * 310.00427 * 14 11 10 44 44 H 1.09003 * 109.47211 * 70.00037 * 14 11 10 45 45 H 0.97002 * 119.99976 * 0.02562 * 17 15 14 46 46 H 0.97005 * 119.99902 * 179.97438 * 21 20 18 47 47 H 1.07997 * 126.52880 * 180.27483 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1285 1.0595 5 6 2.7160 3.3579 0.6639 6 6 3.1100 4.4731 1.5439 7 8 3.4820 5.5258 1.0620 8 7 3.0581 4.3259 2.8826 9 6 3.4555 5.4320 3.7571 10 6 3.3103 5.0040 5.2188 11 7 3.8233 6.0668 6.0936 12 6 4.1349 5.5438 7.4304 13 6 5.4463 4.7575 7.3776 14 6 2.8751 7.1859 6.1740 15 6 3.5303 8.3504 6.8709 16 8 4.6747 8.2574 7.2617 17 7 2.8450 9.4956 7.0590 18 6 3.4412 10.5551 7.6925 19 1 4.4603 10.4723 8.0404 20 6 2.7348 11.7360 7.8859 21 7 1.4951 11.8369 7.4620 22 14 3.5475 13.1799 8.7484 23 1 4.7483 13.6015 7.9833 24 1 2.5891 14.3114 8.8294 25 1 3.9509 12.7746 10.1189 26 6 2.7175 3.3625 -0.6969 27 8 2.2905 2.1528 -1.0929 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7611 3.4863 3.2671 34 1 4.4936 5.6978 3.5579 35 1 2.8165 6.2940 3.5658 36 1 2.2585 4.8254 5.4424 37 1 3.8780 4.0889 5.3877 38 1 4.2365 6.3731 8.1305 39 1 3.3303 4.8865 7.7601 40 1 5.3168 3.8768 6.7485 41 1 6.2318 5.3886 6.9619 42 1 5.7247 4.4469 8.3846 43 1 2.5789 7.4841 5.1683 44 1 1.9937 6.8757 6.7353 45 1 1.9298 9.5701 6.7461 46 1 1.0018 12.6611 7.5974 47 1 3.0075 4.1828 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266385470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = -49.050165 kcal Electronic energy + Delta-G solvation = -28384.771204 eV Core-core repulsion = 24183.453105 eV Total energy + Delta-G solvation = -4201.318098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.82724 -39.70028 -38.71485 -36.87330 -35.45951 -34.75793 -34.38601 -33.78196 -31.33312 -30.84858 -30.01312 -29.13389 -26.39838 -24.96094 -24.56971 -23.95302 -22.46778 -21.50553 -21.07842 -20.45584 -19.14083 -18.43609 -17.82856 -17.24556 -16.81177 -16.37079 -16.00167 -15.61843 -15.29761 -15.06363 -14.92340 -14.68446 -14.53149 -14.09882 -13.90070 -13.80261 -13.72680 -13.52548 -13.23500 -13.08390 -12.40238 -12.34675 -12.15087 -11.79312 -11.70567 -11.67849 -11.52605 -11.45398 -11.39653 -11.23416 -11.07238 -10.76583 -10.53141 -10.41355 -10.35331 -10.17872 -9.45288 -9.42382 -9.12257 -8.40070 -7.95839 -7.88414 -6.38060 -3.78688 0.76083 1.62821 2.15448 2.83448 3.08544 3.22801 3.28242 3.32691 3.41901 3.93660 4.05043 4.26525 4.32894 4.44120 4.55486 4.60877 4.79001 4.85432 5.03090 5.14972 5.16058 5.17768 5.23225 5.28435 5.38833 5.39379 5.46655 5.55211 5.61102 5.69785 5.82046 5.85418 5.89521 5.93080 6.00153 6.13433 6.26716 6.32026 6.48527 6.59032 7.01584 7.28829 7.33444 7.41113 7.58450 7.98678 8.09707 8.65502 9.21633 9.58276 10.10072 10.79655 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.001902 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.284501 B =14717.072755 C =15513.794490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.198 3.802 4 N -0.460 5.460 5 C -0.070 4.070 6 C 0.600 3.400 7 O -0.531 6.531 8 N -0.710 5.710 9 C 0.120 3.880 10 C 0.044 3.956 11 N -0.512 5.512 12 C 0.053 3.947 13 C -0.139 4.139 14 C 0.042 3.958 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.013 3.987 27 O -0.196 6.196 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.023 0.977 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 -25.344 -14.666 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.011 4.011 4 N -0.190 5.190 5 C -0.190 4.190 6 C 0.385 3.615 7 O -0.408 6.408 8 N -0.361 5.361 9 C -0.003 4.003 10 C -0.085 4.085 11 N -0.236 5.236 12 C -0.074 4.074 13 C -0.196 4.196 14 C -0.089 4.089 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.061 4.061 27 O -0.082 6.082 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.242 0.758 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.346 -24.497 -14.286 28.455 hybrid contribution -1.091 0.514 0.016 1.206 sum -3.436 -23.983 -14.270 28.118 Atomic orbital electron populations 1.21801 0.92827 1.03219 1.03157 1.20133 0.97043 0.83835 1.05503 1.26374 0.99456 0.96991 0.78314 1.70748 1.15756 1.02561 1.29979 1.21819 1.09824 0.94231 0.93127 1.16683 0.77842 0.85107 0.81869 1.90871 1.47506 1.27106 1.75311 1.45709 1.66910 1.18064 1.05405 1.21431 1.02147 0.88551 0.88174 1.22244 0.98666 0.95439 0.92105 1.61443 1.43019 1.06944 1.12222 1.22163 0.95972 0.99211 0.90072 1.21692 0.98249 0.99072 1.00635 1.21952 0.93462 0.92081 1.01453 1.19698 0.87713 0.84259 0.85416 1.90506 1.18030 1.82628 1.54789 1.41865 1.15005 1.11385 1.51873 1.19643 0.99512 0.90582 1.33039 0.87960 1.25258 0.95658 0.99062 0.98009 1.69605 1.09513 1.28374 1.46866 0.85920 0.78616 0.79984 0.79699 1.19894 1.21027 1.19967 1.25330 0.98507 0.86501 0.95745 1.84396 1.63332 1.22559 1.37909 0.91577 0.92064 0.90683 0.88641 0.87331 0.75800 0.89846 0.90926 0.94203 0.90116 0.88446 0.95907 0.93894 0.91383 0.92851 0.89278 0.93372 0.77519 0.91861 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.89 37.15 0.37 -0.18 16 2 C -0.03 -0.11 6.56 -27.88 -0.18 -0.29 16 3 C 0.20 1.59 7.56 -13.08 -0.10 1.49 16 4 N -0.46 -4.68 11.06 -7.65 -0.08 -4.76 16 5 C -0.07 -0.78 6.99 -83.02 -0.58 -1.36 16 6 C 0.60 8.01 7.81 -12.52 -0.10 7.91 16 7 O -0.53 -8.76 16.89 5.27 0.09 -8.67 16 8 N -0.71 -8.39 5.55 -61.39 -0.34 -8.73 16 9 C 0.12 1.60 5.70 -4.04 -0.02 1.58 16 10 C 0.04 0.56 4.92 -3.82 -0.02 0.54 16 11 N -0.51 -8.40 4.10 -236.07 -0.97 -9.37 16 12 C 0.05 0.85 5.18 -3.83 -0.02 0.83 16 13 C -0.14 -1.94 9.96 37.15 0.37 -1.57 16 14 C 0.04 0.75 5.27 -4.98 -0.03 0.73 16 15 C 0.44 10.51 7.29 -10.99 -0.08 10.43 16 16 O -0.58 -15.42 14.12 5.55 0.08 -15.34 16 17 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 22 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.01 0.12 11.95 29.96 0.36 0.47 16 27 O -0.20 -1.65 10.73 6.52 0.07 -1.58 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.41 4.04 8.20 -40.82 -0.33 3.70 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 36 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 37 H 0.08 0.90 6.58 -51.93 -0.34 0.56 16 38 H 0.10 1.90 5.85 -51.93 -0.30 1.60 16 39 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 40 H 0.04 0.51 6.91 -51.93 -0.36 0.15 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.23 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 397.82 15.07 5.99 5.99 Total: -1.00 -34.35 397.82 -6.73 -41.08 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.94 Total: 11.13 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -0.27 Total: 12.55 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.73 Total: -61.47 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.24 Total: -25.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.35 -6.73 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266385470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.967 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds