Wall clock time and date at job start Tue Mar 31 2020 20:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47080 * 2 1 4 4 N 1.29944 * 125.37782 * 90.27448 * 3 2 1 5 5 C 1.36063 * 108.47570 * 180.18878 * 4 3 2 6 6 C 1.47422 * 126.44829 * 179.85784 * 5 4 3 7 7 O 1.21606 * 120.00183 * 179.69187 * 6 5 4 8 8 N 1.34776 * 119.99889 * 359.69498 * 6 5 4 9 9 C 1.46496 * 119.99923 * 179.72056 * 8 6 5 10 10 C 1.53002 * 109.47109 * 180.27691 * 9 8 6 11 11 N 1.46900 * 109.47257 * 174.88626 * 10 9 8 12 12 C 1.46897 * 111.00194 * 199.54561 * 11 10 9 13 13 C 1.52992 * 109.47289 * 76.02636 * 12 11 10 14 14 C 1.46898 * 110.99810 * 75.59007 * 11 10 9 15 15 C 1.50699 * 109.47143 * 189.99754 * 14 11 10 16 16 O 1.21287 * 120.00185 * 0.02562 * 15 14 11 17 17 N 1.34777 * 120.00289 * 179.97438 * 15 14 11 18 18 C 1.37095 * 120.00247 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99838 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99869 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99649 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47254 * 60.00311 * 22 20 18 24 24 H 1.48507 * 109.47016 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47262 * 299.99862 * 22 20 18 26 26 C 1.36086 * 107.10376 * 359.60324 * 5 4 3 27 27 O 1.34045 * 125.38040 * 270.02882 * 3 2 1 28 28 H 1.08999 * 109.47545 * 299.99970 * 1 2 3 29 29 H 1.09000 * 109.47317 * 59.99747 * 1 2 3 30 30 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47030 * 240.00132 * 2 1 3 32 32 H 1.08999 * 109.47208 * 119.99712 * 2 1 3 33 33 H 0.97004 * 119.99961 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47409 * 300.27232 * 9 8 6 35 35 H 1.08990 * 109.47414 * 60.27657 * 9 8 6 36 36 H 1.09002 * 109.46790 * 294.88919 * 10 9 8 37 37 H 1.09001 * 109.47415 * 54.88957 * 10 9 8 38 38 H 1.09004 * 109.47079 * 196.02879 * 12 11 10 39 39 H 1.09006 * 109.46931 * 316.02756 * 12 11 10 40 40 H 1.08997 * 109.47344 * 294.87164 * 13 12 11 41 41 H 1.09002 * 109.47158 * 54.87474 * 13 12 11 42 42 H 1.09002 * 109.47328 * 174.87192 * 13 12 11 43 43 H 1.08997 * 109.47492 * 310.00427 * 14 11 10 44 44 H 1.09003 * 109.47211 * 70.00037 * 14 11 10 45 45 H 0.97002 * 119.99976 * 0.02562 * 17 15 14 46 46 H 0.97005 * 119.99902 * 179.97438 * 21 20 18 47 47 H 1.07997 * 126.52880 * 180.27483 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2878 2.1285 1.0595 5 6 2.7160 3.3579 0.6639 6 6 3.1100 4.4731 1.5439 7 8 3.4820 5.5258 1.0620 8 7 3.0581 4.3259 2.8826 9 6 3.4555 5.4320 3.7571 10 6 3.3103 5.0040 5.2188 11 7 3.8233 6.0668 6.0936 12 6 4.1349 5.5438 7.4304 13 6 5.4463 4.7575 7.3776 14 6 2.8751 7.1859 6.1740 15 6 3.5303 8.3504 6.8709 16 8 4.6747 8.2574 7.2617 17 7 2.8450 9.4956 7.0590 18 6 3.4412 10.5551 7.6925 19 1 4.4603 10.4723 8.0404 20 6 2.7348 11.7360 7.8859 21 7 1.4951 11.8369 7.4620 22 14 3.5475 13.1799 8.7484 23 1 4.7483 13.6015 7.9833 24 1 2.5891 14.3114 8.8294 25 1 3.9509 12.7746 10.1189 26 6 2.7175 3.3625 -0.6969 27 8 2.2905 2.1528 -1.0929 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7611 3.4863 3.2671 34 1 4.4936 5.6978 3.5579 35 1 2.8165 6.2940 3.5658 36 1 2.2585 4.8254 5.4424 37 1 3.8780 4.0889 5.3877 38 1 4.2365 6.3731 8.1305 39 1 3.3303 4.8865 7.7601 40 1 5.3168 3.8768 6.7485 41 1 6.2318 5.3886 6.9619 42 1 5.7247 4.4469 8.3846 43 1 2.5789 7.4841 5.1683 44 1 1.9937 6.8757 6.7353 45 1 1.9298 9.5701 6.7461 46 1 1.0018 12.6611 7.5974 47 1 3.0075 4.1828 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266385470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:33 Heat of formation + Delta-G solvation = -77.881065 kcal Electronic energy + Delta-G solvation = -28386.021405 eV Core-core repulsion = 24183.453105 eV Total energy + Delta-G solvation = -4202.568300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.50612 -40.80958 -40.35102 -38.36912 -36.20020 -35.99363 -35.62403 -34.84452 -33.30120 -32.11473 -30.86874 -30.21877 -27.90242 -26.19896 -25.41667 -25.03853 -23.48836 -22.32273 -22.17708 -21.43563 -20.89280 -19.86409 -19.26799 -17.98910 -17.87400 -17.49504 -17.26480 -16.93203 -16.46330 -16.23308 -16.14223 -15.77472 -15.58429 -15.45691 -15.35548 -15.09012 -14.71727 -14.53974 -14.26484 -14.02880 -13.67773 -13.57233 -13.42659 -13.02285 -12.84463 -12.70305 -12.62854 -12.58772 -12.42497 -12.36808 -12.14762 -12.05116 -12.01580 -11.95121 -11.77309 -11.47626 -11.38031 -10.33808 -10.25265 -10.00991 -9.98672 -9.25172 -8.45434 -5.93874 0.01633 0.90057 1.39722 1.41105 1.51980 1.52878 1.88904 2.06837 2.14930 2.29477 2.72113 2.90926 3.21379 3.37350 3.65813 3.74064 3.85026 4.01415 4.15929 4.22015 4.26890 4.27346 4.36037 4.37742 4.45822 4.55814 4.56587 4.58420 4.64640 4.71809 4.76941 4.87798 5.00242 5.01313 5.05535 5.06982 5.19809 5.26444 5.36395 5.41457 5.41859 5.89323 6.08458 6.17604 6.23551 6.53359 6.61707 7.00914 7.14037 7.57791 8.13612 8.71868 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.001902 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.284501 B =14717.072755 C =15513.794490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.204 3.796 4 N -0.480 5.480 5 C -0.099 4.099 6 C 0.598 3.402 7 O -0.572 6.572 8 N -0.698 5.698 9 C 0.128 3.872 10 C 0.054 3.946 11 N -0.532 5.532 12 C 0.054 3.946 13 C -0.132 4.132 14 C 0.055 3.945 15 C 0.442 3.558 16 O -0.610 6.610 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.026 3.974 27 O -0.195 6.195 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -27.635 -15.317 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.006 4.006 4 N -0.210 5.210 5 C -0.218 4.218 6 C 0.385 3.615 7 O -0.451 6.451 8 N -0.349 5.349 9 C 0.004 3.996 10 C -0.074 4.074 11 N -0.257 5.257 12 C -0.073 4.073 13 C -0.190 4.190 14 C -0.076 4.076 15 C 0.229 3.771 16 O -0.496 6.496 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.049 4.049 27 O -0.081 6.081 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.324 -26.834 -14.922 30.884 hybrid contribution -0.798 1.102 0.163 1.370 sum -4.122 -25.732 -14.759 29.950 Atomic orbital electron populations 1.21792 0.92403 1.04323 1.02203 1.20425 0.97209 0.81579 1.07224 1.27251 0.97798 0.97920 0.77645 1.70714 1.16908 1.02368 1.30971 1.21614 1.12103 0.94413 0.93636 1.16994 0.77057 0.85174 0.82306 1.90841 1.49485 1.28814 1.76007 1.45558 1.66293 1.18078 1.04953 1.21224 1.00533 0.88741 0.89111 1.22227 1.00190 0.94668 0.90319 1.61365 1.43385 1.07885 1.13107 1.22100 0.97928 0.98274 0.89032 1.21636 0.96259 0.99157 1.01901 1.21795 0.93809 0.90548 1.01493 1.20723 0.87288 0.84944 0.84151 1.90481 1.19800 1.83420 1.55903 1.41943 1.15244 1.11738 1.52439 1.19618 0.99154 0.92338 1.34958 0.90262 1.26046 0.96194 1.01006 0.98217 1.69672 1.10258 1.29205 1.47135 0.84988 0.77832 0.76977 0.78527 1.19885 1.19528 1.19576 1.25739 0.96806 0.86981 0.95348 1.84439 1.63203 1.22343 1.38074 0.93025 0.92508 0.88559 0.86312 0.86175 0.74456 0.92023 0.92320 0.92007 0.87993 0.92640 0.93229 0.91254 0.94104 0.91477 0.87993 0.91074 0.77157 0.91370 0.73197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 71.98 0.71 -0.02 16 2 C -0.03 -0.14 6.56 29.85 0.20 0.05 16 3 C 0.20 2.88 7.56 88.39 0.67 3.55 16 4 N -0.48 -9.12 11.06 -293.03 -3.24 -12.36 16 5 C -0.10 -2.15 6.99 40.41 0.28 -1.86 16 6 C 0.60 15.94 7.81 86.66 0.68 16.62 16 7 O -0.57 -19.26 16.89 -4.05 -0.07 -19.33 16 8 N -0.70 -15.92 5.55 -466.40 -2.59 -18.51 16 9 C 0.13 3.33 5.70 86.38 0.49 3.83 16 10 C 0.05 1.24 4.92 86.30 0.42 1.66 16 11 N -0.53 -16.99 4.10 -900.80 -3.69 -20.68 16 12 C 0.05 1.67 5.18 86.30 0.45 2.12 16 13 C -0.13 -3.52 9.96 71.98 0.72 -2.80 16 14 C 0.05 1.94 5.27 85.56 0.45 2.39 16 15 C 0.44 21.45 7.29 87.66 0.64 22.09 16 16 O -0.61 -33.97 14.12 -3.05 -0.04 -34.02 16 17 N -0.58 -30.29 5.29 -306.98 -1.62 -31.92 16 18 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.92 -50.84 13.05 21.66 0.28 -50.56 16 22 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.03 0.43 11.95 67.32 0.80 1.24 16 27 O -0.19 -2.93 10.73 0.40 0.00 -2.93 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.12 0.12 8.14 -2.39 -0.02 0.11 16 32 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.42 7.61 8.20 -92.71 -0.76 6.85 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.70 6.95 -2.39 -0.02 1.68 16 36 H 0.06 1.21 8.00 -2.39 -0.02 1.19 16 37 H 0.10 1.94 6.58 -2.39 -0.02 1.93 16 38 H 0.06 2.20 5.85 -2.38 -0.01 2.19 16 39 H 0.05 1.26 8.00 -2.38 -0.02 1.24 16 40 H 0.07 1.46 6.91 -2.39 -0.02 1.45 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.10 3.37 6.71 -2.39 -0.02 3.35 16 44 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 45 H 0.39 19.84 7.90 -92.71 -0.73 19.10 16 46 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 47 H 0.25 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -77.06 397.82 -1.63 -78.69 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.48 Total: 35.52 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 7.79 Total: 30.16 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -10.86 Total: -134.03 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.11 Total: -56.28 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -77.06 -1.63 -78.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266385470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.813 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds