Wall clock time and date at job start Tue Mar 31 2020 20:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47200 * 2 1 4 4 C 1.50701 * 109.46812 * 120.00125 * 2 1 3 5 5 N 1.30017 * 127.33394 * 300.01957 * 4 2 1 6 6 O 1.20660 * 112.30073 * 179.97438 * 5 4 2 7 7 C 1.33498 * 113.15859 * 0.02562 * 6 5 4 8 8 C 1.37366 * 106.33947 * 359.97438 * 7 6 5 9 9 C 1.47393 * 128.56259 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99428 * 140.94788 * 9 8 7 11 11 N 1.34776 * 120.00414 * 320.95156 * 9 8 7 12 12 C 1.46493 * 120.00174 * 5.21598 * 11 9 8 13 13 C 1.46500 * 119.99874 * 185.21342 * 11 9 8 14 14 C 1.52998 * 109.47314 * 90.00003 * 13 11 9 15 15 N 1.46894 * 109.47527 * 179.97438 * 14 13 11 16 16 C 1.46900 * 111.00225 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47188 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00271 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99981 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00154 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99483 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99952 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46968 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47366 * 119.99740 * 24 22 20 27 27 H 1.48496 * 109.46983 * 240.00163 * 24 22 20 28 28 H 1.08997 * 109.46901 * 299.99907 * 1 2 3 29 29 H 1.08997 * 109.46768 * 60.00247 * 1 2 3 30 30 H 1.09003 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47302 * 239.99778 * 2 1 3 32 32 H 1.08997 * 109.47118 * 60.00226 * 3 2 1 33 33 H 1.08996 * 109.46925 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47058 * 299.99575 * 3 2 1 35 35 H 1.08000 * 126.82988 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46915 * 84.51072 * 12 11 9 37 37 H 1.08991 * 109.47210 * 204.51604 * 12 11 9 38 38 H 1.09000 * 109.46913 * 324.51903 * 12 11 9 39 39 H 1.08997 * 109.47359 * 210.00002 * 13 11 9 40 40 H 1.09003 * 109.47090 * 330.00265 * 13 11 9 41 41 H 1.09009 * 109.47277 * 300.00317 * 14 13 11 42 42 H 1.08998 * 109.46970 * 59.99644 * 14 13 11 43 43 H 1.00897 * 110.99910 * 56.04744 * 15 14 13 44 44 H 1.09004 * 109.46956 * 299.99884 * 16 15 14 45 45 H 1.08993 * 109.47168 * 60.00024 * 16 15 14 46 46 H 0.96994 * 120.00431 * 359.97438 * 19 17 16 47 47 H 0.97007 * 119.99792 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.8075 -0.3932 2.4711 6 8 2.3430 -1.1514 3.2419 7 6 3.0294 -2.1211 2.6330 8 6 2.8811 -1.9107 1.2836 9 6 3.4363 -2.6939 0.1652 10 8 2.7652 -2.8938 -0.8292 11 7 4.6875 -3.1884 0.2444 12 6 5.4541 -3.0466 1.4847 13 6 5.2810 -3.8679 -0.9099 14 6 6.0146 -2.8465 -1.7813 15 7 6.6102 -3.5279 -2.9384 16 6 7.3250 -2.5762 -3.7993 17 6 7.9205 -3.3099 -4.9731 18 8 7.7653 -4.5080 -5.0816 19 7 8.6257 -2.6350 -5.9024 20 6 9.1680 -3.3026 -6.9701 21 1 9.0304 -4.3695 -7.0662 22 6 9.8955 -2.6068 -7.9278 23 7 10.0641 -1.3089 -7.8101 24 14 10.6337 -3.5163 -9.3829 25 1 10.3029 -4.9606 -9.2834 26 1 10.0768 -2.9663 -10.6448 27 1 12.1088 -3.3454 -9.3768 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 3.5898 -2.9134 3.1070 36 1 5.1948 -3.8564 2.1667 37 1 6.5198 -3.0880 1.2599 38 1 5.2178 -2.0898 1.9504 39 1 5.9864 -4.6233 -0.5637 40 1 4.4945 -4.3457 -1.4941 41 1 5.3092 -2.0910 -2.1276 42 1 6.8010 -2.3687 -1.1971 43 1 5.9099 -4.0329 -3.4605 44 1 6.6289 -1.8188 -4.1600 45 1 8.1202 -2.0965 -3.2288 46 1 8.7496 -1.6769 -5.8159 47 1 10.5717 -0.8231 -8.4789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266724571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:17 Heat of formation + Delta-G solvation = -36.125966 kcal Electronic energy + Delta-G solvation = -28714.300934 eV Core-core repulsion = 24513.543271 eV Total energy + Delta-G solvation = -4200.757663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.99578 -40.97987 -40.16040 -37.68978 -37.22392 -36.32806 -35.76948 -33.78091 -33.27882 -32.73640 -30.88766 -28.19043 -28.15655 -27.69350 -26.20627 -24.97079 -24.60400 -23.14704 -21.26083 -21.09487 -20.78253 -19.92032 -18.85712 -18.65712 -17.93741 -17.79822 -17.35303 -17.07747 -16.51773 -16.37646 -15.99545 -15.86699 -15.67294 -15.34036 -15.05898 -14.88507 -14.58554 -14.34862 -14.20723 -13.96233 -13.84843 -13.54583 -13.38200 -13.21917 -13.15228 -12.94104 -12.80405 -12.75749 -12.41451 -12.38582 -12.37601 -12.11615 -12.10489 -11.89456 -11.52603 -11.32628 -10.98494 -10.71052 -10.40797 -10.03217 -9.82178 -9.45581 -8.47895 -5.96808 0.14518 0.72092 1.36330 1.41764 1.51286 1.56468 1.89157 2.02582 2.21929 2.29673 2.88064 2.98403 3.19105 3.21129 3.48832 3.62113 3.88647 3.97260 4.03417 4.04904 4.06985 4.13831 4.23789 4.29293 4.45143 4.47578 4.50243 4.55782 4.63963 4.64582 4.68491 4.78522 4.79573 4.84730 4.90661 4.93769 5.01278 5.17923 5.25137 5.35765 5.40484 5.81309 6.04315 6.19947 6.27302 6.58067 6.94789 7.11061 7.19872 7.53943 8.08883 8.69750 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.001892 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.252831 B =14796.814499 C =15607.847523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 C -0.138 4.138 4 C 0.058 3.942 5 N -0.369 5.369 6 O 0.101 5.899 7 C 0.026 3.974 8 C -0.276 4.276 9 C 0.591 3.409 10 O -0.570 6.570 11 N -0.600 5.600 12 C 0.056 3.944 13 C 0.124 3.876 14 C 0.054 3.946 15 N -0.674 5.674 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.275 0.725 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.089 0.911 43 H 0.344 0.656 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 3.968 25.939 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.104 4.104 5 N -0.074 5.074 6 O 0.041 5.959 7 C -0.056 4.056 8 C -0.284 4.284 9 C 0.379 3.621 10 O -0.450 6.450 11 N -0.331 5.331 12 C -0.085 4.085 13 C 0.001 3.999 14 C -0.076 4.076 15 N -0.306 5.306 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.291 0.709 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.107 0.893 43 H 0.162 0.838 44 H 0.078 0.922 45 H 0.127 0.873 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.650 3.981 26.221 29.828 hybrid contribution 0.112 0.052 -2.008 2.012 sum -13.539 4.033 24.213 28.033 Atomic orbital electron populations 1.21758 0.92497 1.01954 1.03212 1.19704 0.97230 0.96143 0.91424 1.21794 1.00961 0.93528 1.03290 1.24962 0.96800 0.94499 0.94136 1.73624 1.17355 1.14793 1.01669 1.84572 1.48142 1.29599 1.33546 1.27327 0.94203 0.93654 0.90392 1.22174 1.09143 1.01806 0.95244 1.17220 0.81508 0.78176 0.85148 1.90814 1.60322 1.59820 1.34069 1.47687 1.13494 1.56489 1.15477 1.22446 0.97805 1.03579 0.84679 1.21334 0.97499 0.94350 0.86748 1.22278 0.97506 0.95746 0.92113 1.60034 1.32791 1.27161 1.10659 1.21525 0.99169 0.93539 0.92403 1.20805 0.83064 0.88019 0.85577 1.90492 1.64683 1.16713 1.78938 1.41938 1.47049 1.10675 1.21342 1.19714 1.30949 0.94178 1.01423 0.90245 1.26068 0.97362 0.96497 1.01457 1.69680 1.41433 1.07652 1.37379 0.84851 0.78075 0.78049 0.77241 1.19748 1.19644 1.19496 0.91947 0.90191 0.93370 0.90112 0.91907 0.92900 0.90270 0.70920 0.88813 0.88790 0.89895 0.87088 0.91455 0.96407 0.89258 0.83794 0.92209 0.87285 0.76964 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.18 71.98 0.66 -1.73 16 2 C -0.03 -0.51 3.38 -11.54 -0.04 -0.55 16 3 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 4 C 0.06 1.17 6.10 45.16 0.28 1.45 16 5 N -0.37 -6.98 12.01 -44.77 -0.54 -7.52 16 6 O 0.10 1.37 11.06 76.94 0.85 2.22 16 7 C 0.03 0.22 10.14 67.61 0.69 0.91 16 8 C -0.28 -4.78 5.64 -18.74 -0.11 -4.89 16 9 C 0.59 12.91 7.57 86.65 0.66 13.56 16 10 O -0.57 -17.75 15.90 -4.09 -0.07 -17.82 16 11 N -0.60 -9.63 2.87 -850.73 -2.44 -12.07 16 12 C 0.06 0.33 9.12 127.77 1.17 1.49 16 13 C 0.12 2.48 5.68 86.38 0.49 2.97 16 14 C 0.05 1.27 6.01 86.30 0.52 1.79 16 15 N -0.67 -21.28 6.13 -517.95 -3.17 -24.45 16 16 C 0.07 2.30 6.17 85.56 0.53 2.83 16 17 C 0.44 21.06 7.82 87.66 0.69 21.75 16 18 O -0.62 -34.74 15.78 -3.07 -0.05 -34.79 16 19 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 20 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 24 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.92 7.29 -2.39 -0.02 1.90 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.28 -0.72 6.66 -2.91 -0.02 -0.74 16 36 H 0.09 0.00 7.51 -2.39 -0.02 -0.02 16 37 H 0.09 0.45 8.03 -2.39 -0.02 0.43 16 38 H 0.08 0.34 5.97 -2.39 -0.01 0.32 16 39 H 0.11 1.84 8.07 -2.39 -0.02 1.83 16 40 H 0.07 1.67 7.36 -2.39 -0.02 1.65 16 41 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.34 11.81 8.43 -89.70 -0.76 11.05 16 44 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 47 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -78.54 398.21 2.25 -76.29 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.48 Total: 34.47 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 7.46 Total: 19.43 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -7.49 Total: -124.92 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: 0.74 Total: -50.38 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.54 2.25 -76.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266724571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.161 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds