Wall clock time and date at job start Tue Mar 31 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 C 1.50692 * 109.47408 * 239.99770 * 2 1 3 5 5 N 1.34776 * 120.00200 * 60.00050 * 4 2 1 6 6 O 1.21283 * 120.00519 * 239.99804 * 4 2 1 7 7 C 1.50702 * 109.47049 * 119.99667 * 2 1 3 8 8 O 1.21279 * 119.99683 * 1.06518 * 7 2 1 9 9 N 1.34772 * 119.99971 * 181.06463 * 7 2 1 10 10 C 1.47861 * 126.93124 * 5.36000 * 9 7 2 11 11 C 1.56012 * 105.11803 * 181.95707 * 10 9 7 12 12 H 1.09001 * 116.26276 * 159.70031 * 11 10 9 13 13 C 1.57084 * 100.41026 * 33.04966 * 11 10 9 14 14 C 1.49286 * 126.92674 * 185.38248 * 9 7 2 15 15 H 1.08998 * 116.12209 * 16.84126 * 14 9 7 16 16 C 1.55960 * 104.87045 * 246.59700 * 14 9 7 17 17 N 1.48288 * 105.09252 * 289.93428 * 16 14 9 18 18 C 1.46900 * 110.99963 * 121.26985 * 17 16 14 19 19 C 1.50698 * 109.47497 * 184.11769 * 18 17 16 20 20 O 1.21295 * 119.99715 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00349 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00094 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00035 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00079 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99758 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99956 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47424 * 59.99462 * 26 24 22 28 28 H 1.48502 * 109.46765 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46743 * 299.99476 * 26 24 22 30 30 H 1.08998 * 109.47419 * 295.12451 * 1 2 3 31 31 H 1.09000 * 109.46973 * 55.12661 * 1 2 3 32 32 H 1.09004 * 109.47343 * 175.12162 * 1 2 3 33 33 H 1.08996 * 109.47422 * 189.06454 * 3 2 1 34 34 H 1.09003 * 109.47434 * 309.06321 * 3 2 1 35 35 H 1.09006 * 109.47488 * 69.06310 * 3 2 1 36 36 H 0.97001 * 119.99941 * 359.97438 * 5 4 2 37 37 H 0.97003 * 120.00358 * 180.02562 * 5 4 2 38 38 H 1.09004 * 110.31438 * 63.04248 * 10 9 7 39 39 H 1.09004 * 110.31176 * 300.86656 * 10 9 7 40 40 H 1.09000 * 112.35701 * 64.12534 * 13 11 10 41 41 H 1.09003 * 112.35984 * 191.54144 * 13 11 10 42 42 H 1.09001 * 111.39058 * 170.47379 * 16 14 9 43 43 H 1.09003 * 109.23255 * 48.29778 * 16 14 9 44 44 H 1.09000 * 109.46940 * 304.11200 * 18 17 16 45 45 H 1.08998 * 109.47274 * 64.11276 * 18 17 16 46 46 H 0.96995 * 119.99977 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99478 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 7 1.7068 -0.2500 -2.4545 6 8 2.7297 -1.6965 -1.1191 7 6 2.0323 -0.7103 1.2305 8 8 1.2443 -1.1881 2.0190 9 7 3.3571 -0.8147 1.4547 10 6 4.4435 -0.2004 0.6618 11 6 5.7640 -0.6891 1.3337 12 1 6.6642 -0.6386 0.7211 13 6 5.3244 -2.1172 1.8181 14 6 4.0237 -1.5743 2.5535 15 1 3.4104 -2.3162 3.0648 16 6 4.6900 -0.4836 3.4472 17 7 5.8076 0.0526 2.6334 18 6 5.6571 1.4982 2.4199 19 6 6.7522 1.9881 1.5078 20 8 7.5772 1.2096 1.0783 21 7 6.8154 3.2913 1.1702 22 6 7.8120 3.7370 0.3408 23 1 8.5466 3.0438 -0.0416 24 6 7.8775 5.0807 -0.0068 25 7 6.9840 5.9242 0.4590 26 14 9.2350 5.6878 -1.1374 27 1 9.1448 4.9837 -2.4417 28 1 9.0831 7.1493 -1.3527 29 1 10.5558 5.4130 -0.5168 30 1 -0.3634 0.4363 0.9304 31 1 -0.3633 0.5876 -0.8431 32 1 -0.3634 -1.0240 -0.0874 33 1 3.1178 1.4468 -0.1619 34 1 1.5505 2.0010 -0.7979 35 1 1.8148 1.9075 0.9598 36 1 1.1488 0.5384 -2.5436 37 1 2.0299 -0.7075 -3.2465 38 1 4.3761 0.8867 0.7060 39 1 4.3964 -0.5414 -0.3725 40 1 5.0791 -2.7794 0.9878 41 1 6.0486 -2.5655 2.4983 42 1 5.0686 -0.9082 4.3770 43 1 3.9636 0.3017 3.6568 44 1 4.6876 1.6991 1.9639 45 1 5.7228 2.0157 3.3769 46 1 6.1559 3.9139 1.5139 47 1 7.0300 6.8623 0.2165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267709373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:29 Heat of formation + Delta-G solvation = -54.177031 kcal Electronic energy + Delta-G solvation = -31861.600001 eV Core-core repulsion = 27660.059585 eV Total energy + Delta-G solvation = -4201.540416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52229 -40.11228 -38.44525 -37.77667 -35.06898 -34.20067 -33.72047 -33.16855 -31.38621 -30.72966 -29.63510 -27.57841 -26.52281 -25.50089 -24.40291 -23.84680 -22.26903 -20.73366 -20.07046 -19.29942 -18.76249 -18.13614 -17.83128 -16.98772 -16.56071 -16.34320 -15.93695 -15.41576 -15.10062 -15.07100 -14.60534 -14.51414 -14.05661 -13.90909 -13.80278 -13.35878 -13.11911 -12.90433 -12.66085 -12.58792 -12.51467 -12.37705 -12.16771 -11.89754 -11.68890 -11.62437 -11.53877 -11.35378 -11.21066 -11.01056 -10.94029 -10.73930 -10.48058 -10.26363 -10.13080 -9.93096 -9.82847 -9.53212 -8.58742 -8.38717 -8.03585 -7.90209 -6.46999 -3.87910 2.31185 2.44968 2.84249 3.15741 3.22286 3.26347 3.33850 3.82934 3.96280 4.11322 4.19164 4.42761 4.52639 4.53666 4.62056 4.75577 4.80030 5.07588 5.08637 5.17283 5.22714 5.26226 5.37299 5.42217 5.48050 5.53285 5.63936 5.74120 5.82437 5.83470 5.87526 5.90196 5.94454 6.04054 6.10837 6.19552 6.27619 6.47049 6.49473 6.98136 7.02869 7.20656 7.50021 7.56114 7.95206 8.00264 8.09335 8.55522 9.12454 9.47930 9.99364 10.70448 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003885 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.168365 B = 7204.827370 C = 8305.669123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.154 4.154 4 C 0.532 3.468 5 N -0.848 5.848 6 O -0.525 6.525 7 C 0.560 3.440 8 O -0.542 6.542 9 N -0.599 5.599 10 C 0.050 3.950 11 C 0.072 3.928 12 H 0.153 0.847 13 C -0.136 4.136 14 C 0.109 3.891 15 H 0.123 0.877 16 C 0.026 3.974 17 N -0.493 5.493 18 C 0.030 3.970 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.391 0.609 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -8.549 -1.865 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.109 4.109 3 C -0.211 4.211 4 C 0.315 3.685 5 N -0.412 5.412 6 O -0.400 6.400 7 C 0.347 3.653 8 O -0.420 6.420 9 N -0.331 5.331 10 C -0.073 4.073 11 C -0.036 4.036 12 H 0.171 0.829 13 C -0.174 4.174 14 C 0.006 3.994 15 H 0.141 0.859 16 C -0.103 4.103 17 N -0.217 5.217 18 C -0.102 4.102 19 C 0.228 3.772 20 O -0.463 6.463 21 N -0.198 5.198 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.236 0.764 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.466 -9.762 -1.245 15.882 hybrid contribution -0.751 1.435 -1.224 2.030 sum -13.217 -8.327 -2.469 15.815 Atomic orbital electron populations 1.21664 0.89805 1.03336 1.03439 1.21082 0.99452 0.97922 0.92426 1.22115 1.03175 0.91547 1.04259 1.20063 0.79567 0.84075 0.84748 1.43756 1.55907 1.33812 1.07755 1.90803 1.36830 1.25771 1.86623 1.19288 0.80821 0.79260 0.85925 1.90677 1.54444 1.49227 1.47656 1.48946 1.04384 1.50136 1.29660 1.23707 0.87857 0.98524 0.97255 1.24866 0.96200 0.91748 0.90768 0.82931 1.24314 0.95760 0.96756 1.00600 1.24294 0.92617 0.93857 0.88635 0.85932 1.23722 0.92109 0.97205 0.97250 1.64759 1.40606 1.02317 1.13993 1.22225 0.97566 0.89786 1.00596 1.19664 0.88241 0.83425 0.85855 1.90468 1.42880 1.54728 1.58208 1.41852 1.27900 1.06722 1.43347 1.19647 1.06860 0.93105 1.23271 0.87912 1.25248 0.98328 0.95755 0.98445 1.69604 1.35228 1.04336 1.45071 0.85937 0.80840 0.77365 0.80207 1.19932 1.20989 1.19846 0.90318 0.91452 0.91481 0.90395 0.90546 0.90544 0.76910 0.76389 0.89813 0.90143 0.89885 0.88620 0.89027 0.92452 0.93119 0.89228 0.77545 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 7.66 37.16 0.28 -0.88 16 2 C -0.10 -1.18 0.60 -156.82 -0.09 -1.28 16 3 C -0.15 -1.57 7.89 37.16 0.29 -1.28 16 4 C 0.53 6.37 5.79 -10.99 -0.06 6.31 16 5 N -0.85 -6.45 8.68 31.22 0.27 -6.18 16 6 O -0.53 -8.33 14.66 5.55 0.08 -8.25 16 7 C 0.56 8.46 6.07 -10.99 -0.07 8.39 16 8 O -0.54 -9.46 16.31 5.56 0.09 -9.37 16 9 N -0.60 -8.84 2.64 -155.63 -0.41 -9.25 16 10 C 0.05 0.77 4.02 -1.68 -0.01 0.76 16 11 C 0.07 1.17 4.11 -62.31 -0.26 0.91 16 12 H 0.15 2.89 6.37 -51.93 -0.33 2.56 16 13 C -0.14 -1.86 6.93 -21.20 -0.15 -2.00 16 14 C 0.11 1.50 5.25 -61.48 -0.32 1.18 16 15 H 0.12 1.60 8.09 -51.93 -0.42 1.18 16 16 C 0.03 0.36 6.30 -1.47 -0.01 0.35 16 17 N -0.49 -8.10 5.16 -218.21 -1.13 -9.23 16 18 C 0.03 0.52 4.65 -4.98 -0.02 0.50 16 19 C 0.44 9.89 7.37 -10.99 -0.08 9.80 16 20 O -0.58 -14.59 13.57 5.54 0.08 -14.51 16 21 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 22 C -0.30 -7.98 9.68 -14.93 -0.14 -8.12 16 23 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 26 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 30 H 0.08 0.77 7.97 -51.93 -0.41 0.35 16 31 H 0.07 0.41 7.69 -51.93 -0.40 0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.94 4.86 -51.93 -0.25 0.69 16 34 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 35 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 36 H 0.40 1.91 7.95 -40.82 -0.32 1.59 16 37 H 0.40 2.69 8.93 -40.82 -0.36 2.32 16 38 H 0.08 1.33 3.08 -51.93 -0.16 1.17 16 39 H 0.08 1.31 5.75 -51.93 -0.30 1.01 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.80 7.61 -51.93 -0.40 0.40 16 44 H 0.05 0.83 5.66 -51.93 -0.29 0.53 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -33.51 366.01 -7.02 -40.53 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -6.43 Total: 16.71 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -0.73 Total: 15.16 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.60 Total: -61.13 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: 0.25 Total: -32.13 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.51 -7.02 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267709373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.650 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds