Wall clock time and date at job start Tue Mar 31 2020 21:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 C 1.50692 * 109.47408 * 239.99770 * 2 1 3 5 5 N 1.34776 * 120.00200 * 60.00050 * 4 2 1 6 6 O 1.21283 * 120.00519 * 239.99804 * 4 2 1 7 7 C 1.50702 * 109.47049 * 119.99667 * 2 1 3 8 8 O 1.21279 * 119.99683 * 1.06518 * 7 2 1 9 9 N 1.34772 * 119.99971 * 181.06463 * 7 2 1 10 10 C 1.47861 * 126.93124 * 5.36000 * 9 7 2 11 11 C 1.56012 * 105.11803 * 181.95707 * 10 9 7 12 12 H 1.09001 * 116.26276 * 159.70031 * 11 10 9 13 13 C 1.57084 * 100.41026 * 33.04966 * 11 10 9 14 14 C 1.49286 * 126.92674 * 185.38248 * 9 7 2 15 15 H 1.08998 * 116.12209 * 16.84126 * 14 9 7 16 16 C 1.55960 * 104.87045 * 246.59700 * 14 9 7 17 17 N 1.48288 * 105.09252 * 289.93428 * 16 14 9 18 18 C 1.46900 * 110.99963 * 121.26985 * 17 16 14 19 19 C 1.50698 * 109.47497 * 184.11769 * 18 17 16 20 20 O 1.21295 * 119.99715 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00349 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00094 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00035 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00079 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99758 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99956 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47424 * 59.99462 * 26 24 22 28 28 H 1.48502 * 109.46765 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46743 * 299.99476 * 26 24 22 30 30 H 1.08998 * 109.47419 * 295.12451 * 1 2 3 31 31 H 1.09000 * 109.46973 * 55.12661 * 1 2 3 32 32 H 1.09004 * 109.47343 * 175.12162 * 1 2 3 33 33 H 1.08996 * 109.47422 * 189.06454 * 3 2 1 34 34 H 1.09003 * 109.47434 * 309.06321 * 3 2 1 35 35 H 1.09006 * 109.47488 * 69.06310 * 3 2 1 36 36 H 0.97001 * 119.99941 * 359.97438 * 5 4 2 37 37 H 0.97003 * 120.00358 * 180.02562 * 5 4 2 38 38 H 1.09004 * 110.31438 * 63.04248 * 10 9 7 39 39 H 1.09004 * 110.31176 * 300.86656 * 10 9 7 40 40 H 1.09000 * 112.35701 * 64.12534 * 13 11 10 41 41 H 1.09003 * 112.35984 * 191.54144 * 13 11 10 42 42 H 1.09001 * 111.39058 * 170.47379 * 16 14 9 43 43 H 1.09003 * 109.23255 * 48.29778 * 16 14 9 44 44 H 1.09000 * 109.46940 * 304.11200 * 18 17 16 45 45 H 1.08998 * 109.47274 * 64.11276 * 18 17 16 46 46 H 0.96995 * 119.99977 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99478 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2303 5 7 1.7068 -0.2500 -2.4545 6 8 2.7297 -1.6965 -1.1191 7 6 2.0323 -0.7103 1.2305 8 8 1.2443 -1.1881 2.0190 9 7 3.3571 -0.8147 1.4547 10 6 4.4435 -0.2004 0.6618 11 6 5.7640 -0.6891 1.3337 12 1 6.6642 -0.6386 0.7211 13 6 5.3244 -2.1172 1.8181 14 6 4.0237 -1.5743 2.5535 15 1 3.4104 -2.3162 3.0648 16 6 4.6900 -0.4836 3.4472 17 7 5.8076 0.0526 2.6334 18 6 5.6571 1.4982 2.4199 19 6 6.7522 1.9881 1.5078 20 8 7.5772 1.2096 1.0783 21 7 6.8154 3.2913 1.1702 22 6 7.8120 3.7370 0.3408 23 1 8.5466 3.0438 -0.0416 24 6 7.8775 5.0807 -0.0068 25 7 6.9840 5.9242 0.4590 26 14 9.2350 5.6878 -1.1374 27 1 9.1448 4.9837 -2.4417 28 1 9.0831 7.1493 -1.3527 29 1 10.5558 5.4130 -0.5168 30 1 -0.3634 0.4363 0.9304 31 1 -0.3633 0.5876 -0.8431 32 1 -0.3634 -1.0240 -0.0874 33 1 3.1178 1.4468 -0.1619 34 1 1.5505 2.0010 -0.7979 35 1 1.8148 1.9075 0.9598 36 1 1.1488 0.5384 -2.5436 37 1 2.0299 -0.7075 -3.2465 38 1 4.3761 0.8867 0.7060 39 1 4.3964 -0.5414 -0.3725 40 1 5.0791 -2.7794 0.9878 41 1 6.0486 -2.5655 2.4983 42 1 5.0686 -0.9082 4.3770 43 1 3.9636 0.3017 3.6568 44 1 4.6876 1.6991 1.9639 45 1 5.7228 2.0157 3.3769 46 1 6.1559 3.9139 1.5139 47 1 7.0300 6.8623 0.2165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267709373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:28 Heat of formation + Delta-G solvation = -82.555646 kcal Electronic energy + Delta-G solvation = -31862.830590 eV Core-core repulsion = 27660.059585 eV Total energy + Delta-G solvation = -4202.771005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.67463 -41.21926 -39.85634 -39.26909 -36.04178 -36.00035 -35.02623 -34.12068 -33.26880 -32.02996 -30.84611 -28.43215 -28.06692 -26.60228 -26.02752 -24.96152 -23.33294 -21.98214 -21.28329 -20.87357 -19.97455 -19.65026 -19.12402 -18.05191 -17.75339 -17.59292 -17.31333 -16.80167 -16.33252 -16.21700 -16.06414 -15.74471 -15.61338 -15.25882 -15.13245 -14.68712 -14.34812 -14.09488 -13.87772 -13.63856 -13.51687 -13.47484 -13.32856 -13.19105 -13.04788 -12.97067 -12.83108 -12.60714 -12.58255 -12.39776 -12.33906 -12.13013 -12.07495 -11.92523 -11.44236 -11.15562 -10.92152 -10.73899 -10.20386 -9.97783 -9.79346 -9.22062 -8.43665 -5.91611 1.30011 1.41122 1.44287 1.44400 1.54047 1.74072 2.05732 2.29837 2.49171 2.71661 3.07275 3.22993 3.24827 3.40583 3.41225 3.68479 3.69195 3.77257 3.89663 3.91138 3.99320 4.29739 4.36279 4.40041 4.48765 4.53661 4.55057 4.59752 4.68602 4.70293 4.71988 4.78338 4.89441 4.92945 5.03776 5.10263 5.12993 5.19482 5.44418 5.73557 5.78552 5.84828 6.07699 6.27667 6.40074 6.62642 6.93139 7.15690 7.18629 7.57876 8.13218 8.73311 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003885 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.168365 B = 7204.827370 C = 8305.669123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C -0.151 4.151 4 C 0.528 3.472 5 N -0.825 5.825 6 O -0.572 6.572 7 C 0.549 3.451 8 O -0.570 6.570 9 N -0.599 5.599 10 C 0.066 3.934 11 C 0.062 3.938 12 H 0.122 0.878 13 C -0.121 4.121 14 C 0.108 3.892 15 H 0.133 0.867 16 C 0.034 3.966 17 N -0.504 5.504 18 C 0.042 3.958 19 C 0.444 3.556 20 O -0.609 6.609 21 N -0.570 5.570 22 C -0.329 4.329 23 H 0.080 0.920 24 C -0.009 4.009 25 N -0.919 5.919 26 Si 0.988 3.012 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.275 1.275 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -7.795 -2.148 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.312 3.688 5 N -0.390 5.390 6 O -0.451 6.451 7 C 0.338 3.662 8 O -0.450 6.450 9 N -0.331 5.331 10 C -0.058 4.058 11 C -0.046 4.046 12 H 0.140 0.860 13 C -0.160 4.160 14 C 0.005 3.995 15 H 0.151 0.849 16 C -0.095 4.095 17 N -0.228 5.228 18 C -0.089 4.089 19 C 0.232 3.768 20 O -0.495 6.495 21 N -0.208 5.208 22 C -0.459 4.459 23 H 0.098 0.902 24 C -0.209 4.209 25 N -0.560 5.560 26 Si 0.812 3.188 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.200 1.200 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.251 0.749 37 H 0.245 0.755 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.124 0.876 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.778 -8.974 -1.549 16.516 hybrid contribution -0.372 1.150 -1.145 1.665 sum -14.150 -7.824 -2.694 16.392 Atomic orbital electron populations 1.21705 0.87929 1.03266 1.04965 1.21111 1.00814 0.98001 0.90660 1.22133 1.02046 0.90994 1.05662 1.20189 0.79146 0.83596 0.85881 1.43568 1.54871 1.33859 1.06654 1.90784 1.39106 1.27880 1.87331 1.19983 0.80529 0.78981 0.86708 1.90653 1.54911 1.50529 1.48914 1.49021 1.04407 1.50005 1.29649 1.23448 0.87647 0.98018 0.96668 1.24664 0.95445 0.93716 0.90809 0.85990 1.24234 0.95981 0.95123 1.00626 1.24415 0.92538 0.94068 0.88514 0.84914 1.23759 0.91257 0.97083 0.97365 1.64774 1.42245 1.01561 1.14230 1.22096 0.96031 0.90741 1.00067 1.20481 0.88558 0.82539 0.85263 1.90460 1.44420 1.55395 1.59244 1.41885 1.27771 1.07477 1.43627 1.19598 1.07768 0.93501 1.24989 0.90180 1.25947 1.00203 0.95386 0.99350 1.69663 1.36120 1.04640 1.45558 0.85059 0.78050 0.77305 0.78370 1.19631 1.19688 1.19993 0.90713 0.87571 0.92784 0.92515 0.87117 0.90507 0.74894 0.75518 0.90327 0.91229 0.90312 0.87165 0.86808 0.92259 0.91590 0.87591 0.77151 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 7.66 71.98 0.55 -1.45 16 2 C -0.10 -2.17 0.60 -53.68 -0.03 -2.20 16 3 C -0.15 -2.81 7.89 71.98 0.57 -2.25 16 4 C 0.53 12.12 5.79 87.65 0.51 12.63 16 5 N -0.82 -10.86 8.68 -173.54 -1.51 -12.36 16 6 O -0.57 -18.23 14.66 -3.04 -0.04 -18.27 16 7 C 0.55 16.29 6.07 87.66 0.53 16.82 16 8 O -0.57 -19.62 16.31 -3.03 -0.05 -19.67 16 9 N -0.60 -17.43 2.64 -764.69 -2.02 -19.45 16 10 C 0.07 2.05 4.02 87.16 0.35 2.40 16 11 C 0.06 2.04 4.11 46.85 0.19 2.23 16 12 H 0.12 4.84 6.37 -2.39 -0.02 4.83 16 13 C -0.12 -3.26 6.93 34.18 0.24 -3.03 16 14 C 0.11 2.84 5.25 47.63 0.25 3.09 16 15 H 0.13 3.29 8.09 -2.39 -0.02 3.27 16 16 C 0.03 0.86 6.30 87.06 0.55 1.41 16 17 N -0.50 -16.22 5.16 -844.28 -4.36 -20.58 16 18 C 0.04 1.44 4.65 85.56 0.40 1.84 16 19 C 0.44 20.13 7.37 87.66 0.65 20.78 16 20 O -0.61 -31.64 13.57 -3.08 -0.04 -31.68 16 21 N -0.57 -27.88 5.29 -306.98 -1.62 -29.50 16 22 C -0.33 -17.86 9.68 84.04 0.81 -17.05 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 25 N -0.92 -47.65 13.05 21.66 0.28 -47.36 16 26 Si 0.99 41.44 29.55 68.60 2.03 43.46 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.07 1.32 7.97 -2.39 -0.02 1.30 16 31 H 0.11 0.88 7.69 -2.39 -0.02 0.86 16 32 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.32 4.86 -2.39 -0.01 1.31 16 34 H 0.11 1.25 7.80 -2.39 -0.02 1.24 16 35 H 0.08 1.44 8.12 -2.38 -0.02 1.42 16 36 H 0.42 2.62 7.95 -92.71 -0.74 1.89 16 37 H 0.41 4.74 8.93 -92.71 -0.83 3.91 16 38 H 0.08 2.51 3.08 -2.39 -0.01 2.51 16 39 H 0.07 2.33 5.75 -2.39 -0.01 2.31 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.06 1.52 7.61 -2.39 -0.02 1.50 16 44 H 0.07 2.09 5.66 -2.39 -0.01 2.08 16 45 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.39 18.44 7.90 -92.71 -0.73 17.70 16 47 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -73.98 366.01 -2.54 -76.52 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -1.24 Total: 43.67 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 6.03 Total: 35.23 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -9.22 Total: -129.26 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -0.14 Total: -69.63 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -73.98 -2.54 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267709373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.039 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds