Wall clock time and date at job start Tue Mar 31 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 H 1.08996 * 109.46981 * 304.99903 * 3 2 1 5 5 C 1.53000 * 109.47055 * 185.00042 * 3 2 1 6 6 N 1.46499 * 109.47079 * 185.00016 * 5 3 2 7 7 C 1.34768 * 120.00217 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00162 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00328 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46903 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46743 * 180.02562 * 10 9 7 12 12 C 1.38229 * 120.76370 * 269.98053 * 11 10 9 13 13 C 1.50701 * 120.38118 * 0.04381 * 12 11 10 14 14 N 1.32457 * 119.24614 * 180.02562 * 12 11 10 15 15 C 1.32319 * 120.90269 * 0.02562 * 14 12 11 16 16 O 1.35459 * 119.16338 * 180.02562 * 15 14 12 17 17 N 1.32285 * 121.66817 * 359.70983 * 15 14 12 18 18 C 1.32779 * 120.66139 * 0.57457 * 17 15 14 19 19 O 1.35512 * 120.47476 * 179.71375 * 18 17 15 20 20 N 1.46500 * 109.46951 * 64.99622 * 3 2 1 21 21 C 1.36932 * 120.00436 * 275.00023 * 20 3 2 22 22 H 1.08003 * 119.99828 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00208 * 180.02562 * 21 20 3 24 24 N 1.31619 * 120.00118 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47003 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47120 * 119.99568 * 25 23 21 28 28 H 1.48501 * 109.46704 * 239.99304 * 25 23 21 29 29 H 1.09003 * 109.46922 * 300.00019 * 1 2 3 30 30 H 1.08997 * 109.46917 * 60.00027 * 1 2 3 31 31 H 1.09000 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47236 * 240.00196 * 2 1 3 33 33 H 1.08999 * 109.47063 * 119.99449 * 2 1 3 34 34 H 1.08993 * 109.47009 * 64.99924 * 5 3 2 35 35 H 1.09000 * 109.46586 * 304.99836 * 5 3 2 36 36 H 0.97008 * 120.00025 * 359.97438 * 6 5 3 37 37 H 1.09000 * 109.46560 * 60.00613 * 9 7 6 38 38 H 1.08994 * 109.47354 * 300.00420 * 9 7 6 39 39 H 1.09000 * 109.46950 * 60.00928 * 10 9 7 40 40 H 1.08995 * 109.47660 * 299.99859 * 10 9 7 41 41 H 1.09005 * 109.46820 * 89.99827 * 13 12 11 42 42 H 1.08999 * 109.47335 * 209.99808 * 13 12 11 43 43 H 1.08995 * 109.46843 * 330.00297 * 13 12 11 44 44 H 0.96703 * 113.99983 * 89.99595 * 16 15 14 45 45 H 0.96700 * 114.00230 * 269.72605 * 19 18 17 46 46 H 0.97004 * 119.99320 * 95.00536 * 20 3 2 47 47 H 0.96998 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8168 -0.0060 7 6 5.3857 3.0630 -0.0858 8 8 6.1635 2.1484 -0.2573 9 6 5.8982 4.4749 0.0368 10 6 7.4231 4.4765 -0.0875 11 6 7.9356 5.8883 0.0357 12 6 8.0804 6.6881 -1.0824 13 6 7.7259 6.1597 -2.4485 14 7 8.5340 7.9243 -0.9394 15 6 8.8486 8.3989 0.2550 16 8 9.3088 9.6685 0.3607 17 7 8.7193 7.6669 1.3493 18 6 8.2759 6.4173 1.2795 19 8 8.1503 5.6689 2.4023 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6735 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0485 3.2945 2.5547 24 7 0.8891 3.3294 3.5669 25 14 -1.6390 4.0796 2.7145 26 1 -2.3886 3.9046 1.4446 27 1 -2.3840 3.4305 3.8230 28 1 -1.4856 5.5283 3.0028 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4410 3.5485 0.1308 37 1 5.6127 4.8820 1.0068 38 1 5.4680 5.0877 -0.7553 39 1 7.7090 4.0693 -1.0573 40 1 7.8530 3.8639 0.7049 41 1 6.6777 6.3722 -2.6594 42 1 8.3525 6.6423 -3.1985 43 1 7.8908 5.0827 -2.4755 44 1 8.6148 10.3287 0.4934 45 1 8.9414 5.1599 2.6262 46 1 2.2719 2.1232 1.9977 47 1 0.6324 3.7630 4.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267816301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:42 Heat of formation + Delta-G solvation = -68.267854 kcal Electronic energy + Delta-G solvation = -29150.393105 eV Core-core repulsion = 24948.241665 eV Total energy + Delta-G solvation = -4202.151440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75673 -39.49536 -38.53234 -37.41044 -36.77969 -34.92727 -33.71796 -33.53377 -32.40530 -30.66013 -29.78225 -28.89401 -27.77175 -25.34279 -23.73798 -23.27837 -22.71968 -21.89473 -20.22832 -19.69531 -19.57727 -18.90419 -18.32342 -17.43724 -16.79624 -16.16061 -15.84252 -15.59176 -15.52051 -15.05814 -14.65652 -14.30003 -14.14666 -13.96728 -13.48575 -13.42674 -13.22375 -12.98658 -12.93277 -12.78750 -12.70193 -12.48958 -12.34058 -12.11411 -11.93036 -11.47360 -11.17568 -11.04614 -11.00194 -10.92942 -10.77000 -10.69269 -10.46336 -10.22643 -10.03409 -9.72085 -9.58207 -9.56797 -9.29066 -8.99639 -8.66020 -7.07441 -5.85409 -3.14767 0.35757 0.57530 2.56638 2.90073 2.97292 3.36261 3.37764 3.42808 3.45113 3.54557 3.91870 4.37841 4.45077 4.50701 4.67633 4.86626 4.93857 5.05148 5.14756 5.25310 5.33358 5.38517 5.41250 5.48642 5.52795 5.55590 5.74010 5.87963 5.88885 5.93016 5.94270 6.04083 6.12981 6.39250 6.42784 6.51339 6.54476 6.57637 6.86860 6.98984 7.02761 7.08431 7.20919 7.63095 7.63962 7.89719 8.31780 8.52497 9.43932 9.98800 10.34562 11.36381 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.002577 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.357920 B =10861.202428 C =12187.795176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.558 6.558 9 C -0.136 4.136 10 C -0.048 4.048 11 C -0.209 4.209 12 C 0.212 3.788 13 C -0.113 4.113 14 N -0.530 5.530 15 C 0.514 3.486 16 O -0.458 6.458 17 N -0.551 5.551 18 C 0.389 3.611 19 O -0.465 6.465 20 N -0.722 5.722 21 C -0.237 4.237 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.413 0.587 45 H 0.410 0.590 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 5.041 -10.313 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.362 5.362 7 C 0.299 3.701 8 O -0.437 6.437 9 C -0.176 4.176 10 C -0.087 4.087 11 C -0.215 4.215 12 C 0.067 3.933 13 C -0.170 4.170 14 N -0.257 5.257 15 C 0.209 3.791 16 O -0.261 6.261 17 N -0.288 5.288 18 C 0.202 3.798 19 O -0.273 6.273 20 N -0.364 5.364 21 C -0.368 4.368 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.272 0.728 45 H 0.270 0.730 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.159 5.421 -10.365 19.147 hybrid contribution -1.378 0.222 0.893 1.657 sum 13.781 5.643 -9.472 17.649 Atomic orbital electron populations 1.21771 0.95740 0.99638 1.03241 1.22073 0.96964 0.98437 1.00005 1.20566 0.89994 0.92786 0.91412 0.92896 1.21661 0.95594 0.82737 1.01002 1.46002 1.07198 1.10826 1.72204 1.20449 0.82530 0.90802 0.76363 1.90662 1.56064 1.46622 1.50358 1.21611 0.95725 0.95200 1.05071 1.20123 0.94144 0.89542 1.04877 1.21654 1.06605 1.00274 0.92987 1.21364 0.88711 0.86861 0.96374 1.20946 1.03487 1.02081 0.90522 1.67856 1.15328 1.15572 1.26989 1.19811 0.88998 0.87513 0.82735 1.84713 1.35688 1.12014 1.93681 1.67405 1.18566 1.08201 1.34598 1.18975 0.89195 0.86121 0.85502 1.84779 1.41249 1.60023 1.41234 1.42463 1.16781 1.65844 1.11293 1.19236 0.91945 1.27662 0.98002 0.90875 1.24736 0.98027 1.01576 0.96396 1.69665 1.35105 1.48881 1.03969 0.86205 0.84143 0.78881 0.77472 1.20549 1.21915 1.21950 0.89678 0.94128 0.94877 0.93867 0.92536 0.91919 0.91879 0.75293 0.88265 0.89079 0.89195 0.89413 0.88909 0.89527 0.89036 0.72755 0.72957 0.78093 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 3 C 0.16 2.88 2.59 -67.93 -0.18 2.70 16 4 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 5 C 0.11 1.83 5.23 -4.04 -0.02 1.81 16 6 N -0.71 -10.87 5.39 -60.30 -0.32 -11.20 16 7 C 0.51 7.45 7.83 -10.99 -0.09 7.37 16 8 O -0.56 -9.56 15.98 5.55 0.09 -9.47 16 9 C -0.14 -1.52 5.68 -27.88 -0.16 -1.68 16 10 C -0.05 -0.47 4.09 -27.88 -0.11 -0.59 16 11 C -0.21 -2.12 5.18 -104.20 -0.54 -2.66 16 12 C 0.21 2.10 6.82 -82.33 -0.56 1.54 16 13 C -0.11 -0.78 9.83 36.01 0.35 -0.42 16 14 N -0.53 -6.10 10.40 -11.01 -0.11 -6.21 16 15 C 0.51 6.12 8.71 -91.28 -0.80 5.33 16 16 O -0.46 -4.50 13.64 -18.07 -0.25 -4.74 16 17 N -0.55 -7.01 10.49 -14.79 -0.16 -7.17 16 18 C 0.39 4.45 7.80 -16.72 -0.13 4.32 16 19 O -0.47 -4.77 12.74 -18.23 -0.23 -5.00 16 20 N -0.72 -15.92 4.51 -53.43 -0.24 -16.16 16 21 C -0.24 -5.88 7.75 -15.06 -0.12 -5.99 16 22 H 0.07 1.78 7.32 -52.48 -0.38 1.39 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16 25 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 6.43 8.14 -40.82 -0.33 6.09 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.81 6.03 -51.93 -0.31 0.50 16 40 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.54 6.06 -51.93 -0.31 0.22 16 44 H 0.41 1.93 9.06 45.56 0.41 2.34 16 45 H 0.41 2.14 9.06 45.56 0.41 2.55 16 46 H 0.39 9.37 7.80 -40.82 -0.32 9.05 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -33.63 393.73 -7.16 -40.79 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -5.32 Total: 15.94 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.25 Total: 6.75 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.11 Total: -66.36 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.39 Total: -19.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.63 -7.16 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267816301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.476 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds