Wall clock time and date at job start Tue Mar 31 2020 21:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 H 1.08996 * 109.46981 * 304.99903 * 3 2 1 5 5 C 1.53000 * 109.47055 * 185.00042 * 3 2 1 6 6 N 1.46499 * 109.47079 * 185.00016 * 5 3 2 7 7 C 1.34768 * 120.00217 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00162 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00328 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46903 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46743 * 180.02562 * 10 9 7 12 12 C 1.38229 * 120.76370 * 269.98053 * 11 10 9 13 13 C 1.50701 * 120.38118 * 0.04381 * 12 11 10 14 14 N 1.32457 * 119.24614 * 180.02562 * 12 11 10 15 15 C 1.32319 * 120.90269 * 0.02562 * 14 12 11 16 16 O 1.35459 * 119.16338 * 180.02562 * 15 14 12 17 17 N 1.32285 * 121.66817 * 359.70983 * 15 14 12 18 18 C 1.32779 * 120.66139 * 0.57457 * 17 15 14 19 19 O 1.35512 * 120.47476 * 179.71375 * 18 17 15 20 20 N 1.46500 * 109.46951 * 64.99622 * 3 2 1 21 21 C 1.36932 * 120.00436 * 275.00023 * 20 3 2 22 22 H 1.08003 * 119.99828 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00208 * 180.02562 * 21 20 3 24 24 N 1.31619 * 120.00118 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47003 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47120 * 119.99568 * 25 23 21 28 28 H 1.48501 * 109.46704 * 239.99304 * 25 23 21 29 29 H 1.09003 * 109.46922 * 300.00019 * 1 2 3 30 30 H 1.08997 * 109.46917 * 60.00027 * 1 2 3 31 31 H 1.09000 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47236 * 240.00196 * 2 1 3 33 33 H 1.08999 * 109.47063 * 119.99449 * 2 1 3 34 34 H 1.08993 * 109.47009 * 64.99924 * 5 3 2 35 35 H 1.09000 * 109.46586 * 304.99836 * 5 3 2 36 36 H 0.97008 * 120.00025 * 359.97438 * 6 5 3 37 37 H 1.09000 * 109.46560 * 60.00613 * 9 7 6 38 38 H 1.08994 * 109.47354 * 300.00420 * 9 7 6 39 39 H 1.09000 * 109.46950 * 60.00928 * 10 9 7 40 40 H 1.08995 * 109.47660 * 299.99859 * 10 9 7 41 41 H 1.09005 * 109.46820 * 89.99827 * 13 12 11 42 42 H 1.08999 * 109.47335 * 209.99808 * 13 12 11 43 43 H 1.08995 * 109.46843 * 330.00297 * 13 12 11 44 44 H 0.96703 * 113.99983 * 89.99595 * 16 15 14 45 45 H 0.96700 * 114.00230 * 269.72605 * 19 18 17 46 46 H 0.97004 * 119.99320 * 95.00536 * 20 3 2 47 47 H 0.96998 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8168 -0.0060 7 6 5.3857 3.0630 -0.0858 8 8 6.1635 2.1484 -0.2573 9 6 5.8982 4.4749 0.0368 10 6 7.4231 4.4765 -0.0875 11 6 7.9356 5.8883 0.0357 12 6 8.0804 6.6881 -1.0824 13 6 7.7259 6.1597 -2.4485 14 7 8.5340 7.9243 -0.9394 15 6 8.8486 8.3989 0.2550 16 8 9.3088 9.6685 0.3607 17 7 8.7193 7.6669 1.3493 18 6 8.2759 6.4173 1.2795 19 8 8.1503 5.6689 2.4023 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6735 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0485 3.2945 2.5547 24 7 0.8891 3.3294 3.5669 25 14 -1.6390 4.0796 2.7145 26 1 -2.3886 3.9046 1.4446 27 1 -2.3840 3.4305 3.8230 28 1 -1.4856 5.5283 3.0028 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4410 3.5485 0.1308 37 1 5.6127 4.8820 1.0068 38 1 5.4680 5.0877 -0.7553 39 1 7.7090 4.0693 -1.0573 40 1 7.8530 3.8639 0.7049 41 1 6.6777 6.3722 -2.6594 42 1 8.3525 6.6423 -3.1985 43 1 7.8908 5.0827 -2.4755 44 1 8.6148 10.3287 0.4934 45 1 8.9414 5.1599 2.6262 46 1 2.2719 2.1232 1.9977 47 1 0.6324 3.7630 4.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267816301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:41 Heat of formation + Delta-G solvation = -100.379144 kcal Electronic energy + Delta-G solvation = -29151.785555 eV Core-core repulsion = 24948.241665 eV Total energy + Delta-G solvation = -4203.543890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55702 -40.68049 -39.32359 -38.30516 -38.11911 -35.77597 -35.15098 -34.37870 -34.08941 -31.60448 -31.35767 -29.81242 -29.00132 -26.37440 -25.37776 -24.18547 -23.86428 -22.89566 -21.59444 -20.93807 -20.36459 -19.69913 -19.23447 -19.08039 -18.01010 -17.09584 -16.92747 -16.83015 -16.51759 -16.34359 -15.81347 -15.68364 -15.11765 -14.94717 -14.80378 -14.61871 -14.42853 -14.24430 -13.99908 -13.66437 -13.52682 -13.46511 -13.36317 -13.17522 -12.95494 -12.79097 -12.75138 -12.64004 -12.32802 -12.05987 -12.00476 -11.85999 -11.84327 -11.58559 -11.48767 -11.31698 -10.96373 -10.79548 -10.40587 -10.12740 -9.92044 -8.95287 -7.86562 -5.12965 -0.43999 -0.20622 1.49231 1.52054 1.59296 1.74265 1.82454 2.20161 2.41605 2.60074 2.60973 3.20383 3.47425 3.54856 3.70405 3.85748 3.94048 4.01137 4.06357 4.17864 4.27957 4.33052 4.43325 4.51711 4.58554 4.61679 4.73588 4.74480 4.82921 4.87750 4.91731 5.04463 5.09211 5.14187 5.17228 5.23987 5.37479 5.53420 5.62981 5.64951 5.67917 5.74479 6.34052 6.42469 6.46365 6.68334 6.82888 7.33555 7.42138 8.14948 8.38995 9.36434 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.002577 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.357920 B =10861.202428 C =12187.795176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.060 0.940 5 C 0.123 3.877 6 N -0.714 5.714 7 C 0.513 3.487 8 O -0.583 6.583 9 C -0.128 4.128 10 C -0.039 4.039 11 C -0.208 4.208 12 C 0.212 3.788 13 C -0.113 4.113 14 N -0.543 5.543 15 C 0.508 3.492 16 O -0.465 6.465 17 N -0.579 5.579 18 C 0.381 3.619 19 O -0.478 6.478 20 N -0.728 5.728 21 C -0.211 4.211 22 H 0.081 0.919 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.956 3.044 26 H -0.265 1.265 27 H -0.304 1.304 28 H -0.300 1.300 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.410 0.590 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.432 0.568 45 H 0.428 0.572 46 H 0.372 0.628 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.333 4.676 -12.721 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.002 4.002 6 N -0.365 5.365 7 C 0.301 3.699 8 O -0.464 6.464 9 C -0.168 4.168 10 C -0.078 4.078 11 C -0.213 4.213 12 C 0.068 3.932 13 C -0.169 4.169 14 N -0.271 5.271 15 C 0.203 3.797 16 O -0.271 6.271 17 N -0.316 5.316 18 C 0.195 3.805 19 O -0.288 6.288 20 N -0.368 5.368 21 C -0.343 4.343 22 H 0.098 0.902 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.787 3.213 26 H -0.189 1.189 27 H -0.232 1.232 28 H -0.228 1.228 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.245 0.755 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.295 0.705 45 H 0.292 0.708 46 H 0.204 0.796 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.022 5.039 -12.823 20.384 hybrid contribution -1.297 0.267 1.563 2.049 sum 13.725 5.307 -11.260 18.529 Atomic orbital electron populations 1.21705 0.96098 1.00532 1.01772 1.21998 0.96541 0.97542 1.01007 1.20731 0.91248 0.93109 0.89409 0.92230 1.21528 0.94086 0.83178 1.01387 1.46040 1.07647 1.10429 1.72357 1.20940 0.81874 0.91814 0.75264 1.90650 1.56469 1.47763 1.51514 1.21586 0.96665 0.93119 1.05389 1.20047 0.93037 0.89300 1.05401 1.21606 1.06816 1.00287 0.92629 1.21892 0.87472 0.86282 0.97583 1.21083 1.04348 1.02744 0.88753 1.67955 1.16125 1.16374 1.26675 1.20014 0.88780 0.88043 0.82854 1.84664 1.36901 1.11909 1.93668 1.67416 1.19918 1.08992 1.35292 1.19196 0.89111 0.86046 0.86162 1.84733 1.42759 1.60196 1.41158 1.42593 1.15731 1.66032 1.12449 1.19522 0.92491 1.24932 0.97370 0.90165 1.25346 1.00795 1.03676 0.96762 1.69805 1.36701 1.51109 1.04302 0.85317 0.81174 0.77366 0.77412 1.18926 1.23183 1.22793 0.93371 0.93138 0.92971 0.90579 0.93765 0.90032 0.93412 0.75451 0.89240 0.86676 0.87882 0.90039 0.87539 0.88854 0.87748 0.70519 0.70830 0.79599 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.18 71.98 0.66 -4.00 16 2 C -0.13 -4.04 5.61 30.60 0.17 -3.87 16 3 C 0.16 5.48 2.59 44.99 0.12 5.60 16 4 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 5 C 0.12 3.72 5.23 86.38 0.45 4.17 16 6 N -0.71 -20.85 5.39 -463.07 -2.49 -23.34 16 7 C 0.51 14.16 7.83 87.66 0.69 14.84 16 8 O -0.58 -19.12 15.98 -3.04 -0.05 -19.16 16 9 C -0.13 -2.64 5.68 29.85 0.17 -2.47 16 10 C -0.04 -0.71 4.09 29.85 0.12 -0.59 16 11 C -0.21 -3.95 5.18 -19.59 -0.10 -4.05 16 12 C 0.21 3.86 6.82 42.46 0.29 4.15 16 13 C -0.11 -1.24 9.83 71.24 0.70 -0.54 16 14 N -0.54 -11.92 10.40 -301.70 -3.14 -15.06 16 15 C 0.51 11.88 8.71 180.58 1.57 13.45 16 16 O -0.46 -8.93 13.64 -87.57 -1.19 -10.13 16 17 N -0.58 -14.67 10.49 -426.37 -4.47 -19.14 16 18 C 0.38 8.57 7.80 84.82 0.66 9.23 16 19 O -0.48 -9.74 12.74 -88.14 -1.12 -10.86 16 20 N -0.73 -31.70 4.51 -322.94 -1.46 -33.16 16 21 C -0.21 -10.30 7.75 84.03 0.65 -9.65 16 22 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 24 N -0.97 -56.05 13.06 21.65 0.28 -55.77 16 25 Si 0.96 43.85 29.55 68.60 2.03 45.88 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H 0.05 1.92 5.99 -2.39 -0.01 1.90 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 12.32 8.14 -92.70 -0.75 11.56 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 1.60 6.03 -2.39 -0.01 1.59 16 40 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 41 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.89 6.06 -2.39 -0.01 0.88 16 44 H 0.43 3.81 9.06 -74.06 -0.67 3.14 16 45 H 0.43 4.41 9.06 -74.06 -0.67 3.74 16 46 H 0.37 18.24 7.80 -92.71 -0.72 17.52 16 47 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -72.05 393.73 -6.76 -78.81 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.77 Total: 39.12 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 6.62 Total: 22.81 kcal Atomic # 7 Polarization: -135.19 SS G_CDS: -11.28 Total: -146.47 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -2.37 Total: -40.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.05 -6.76 -78.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267816301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.573 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds