Wall clock time and date at job start Tue Mar 31 2020 20:26:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50704 * 109.47224 * 2 1
4 4 N 1.33692 * 126.27407 * 270.02599 * 3 2 1
5 5 C 1.30616 * 108.99292 * 179.97438 * 4 3 2
6 6 O 1.33657 * 109.15604 * 359.75305 * 5 4 3
7 7 C 1.35344 * 107.68642 * 0.39695 * 6 5 4
8 8 C 1.46720 * 126.64363 * 179.87466 * 7 6 5
9 9 O 1.21686 * 119.99791 * 179.68942 * 8 7 6
10 10 N 1.34775 * 120.00312 * 359.68211 * 8 7 6
11 11 C 1.46495 * 120.00077 * 179.97438 * 10 8 7
12 12 C 1.53001 * 109.47155 * 180.02562 * 11 10 8
13 13 H 1.09007 * 109.46923 * 65.00206 * 12 11 10
14 14 C 1.52993 * 109.47538 * 185.00270 * 12 11 10
15 15 C 1.53004 * 109.47589 * 184.25924 * 14 12 11
16 16 N 1.46897 * 109.47081 * 305.00579 * 12 11 10
17 17 C 1.46906 * 111.00071 * 305.54264 * 16 12 11
18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 12
19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16
20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16
21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17
22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18
23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18
24 24 N 1.31419 * 119.99931 * 180.02562 * 23 21 20
25 25 Si 1.86798 * 119.99939 * 359.97438 * 23 21 20
26 26 H 1.48500 * 109.46941 * 90.00720 * 25 23 21
27 27 H 1.48505 * 109.47067 * 210.00152 * 25 23 21
28 28 H 1.48496 * 109.47447 * 330.00283 * 25 23 21
29 29 H 1.09002 * 109.46981 * 60.00033 * 1 2 3
30 30 H 1.08999 * 109.47210 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46721 * 299.99890 * 1 2 3
32 32 H 1.09004 * 109.47428 * 239.99877 * 2 1 3
33 33 H 1.09002 * 109.46981 * 119.99967 * 2 1 3
34 34 H 1.08007 * 125.41899 * 179.97438 * 5 4 3
35 35 H 0.97005 * 119.99383 * 0.02562 * 10 8 7
36 36 H 1.09003 * 109.47236 * 60.00581 * 11 10 8
37 37 H 1.08997 * 109.47325 * 300.00596 * 11 10 8
38 38 H 1.09008 * 109.47225 * 304.26062 * 14 12 11
39 39 H 1.09003 * 109.47327 * 64.25520 * 14 12 11
40 40 H 1.08998 * 109.46846 * 54.73714 * 15 14 12
41 41 H 1.09001 * 109.46804 * 174.73220 * 15 14 12
42 42 H 1.08995 * 109.46997 * 294.73660 * 15 14 12
43 43 H 1.00895 * 111.00401 * 69.50011 * 16 12 11
44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 12
45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 12
46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17
47 47 H 0.97003 * 119.99568 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2956 2.1668 -1.0778
5 6 2.7110 3.3427 -0.6898
6 8 2.7207 3.3857 0.6460
7 6 2.3012 2.1813 1.0992
8 6 2.1575 1.7750 2.5017
9 8 1.7622 0.6568 2.7737
10 7 2.4634 2.6403 3.4887
11 6 2.3194 2.2347 4.8890
12 6 2.7286 3.3936 5.8003
13 1 2.0340 4.2231 5.6674
14 6 2.6979 2.9313 7.2584
15 6 3.0036 4.1170 8.1760
16 7 4.0871 3.8325 5.4542
17 6 5.0303 2.7069 5.4947
18 6 6.4240 3.2092 5.2184
19 8 6.6131 4.3888 5.0089
20 7 7.4612 2.3486 5.2101
21 6 8.7290 2.8054 4.9583
22 1 8.8967 3.8550 4.7669
23 6 9.7982 1.9180 4.9492
24 7 11.0136 2.3561 4.7082
25 14 9.5082 0.1028 5.2809
26 1 9.2379 -0.5975 3.9995
27 1 10.7142 -0.4825 5.9200
28 1 8.3421 -0.0549 6.1867
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 2.9973 4.1528 -1.3443
35 1 2.7783 3.5318 3.2718
36 1 2.9589 1.3742 5.0857
37 1 1.2809 1.9680 5.0851
38 1 1.7099 2.5353 7.4933
39 1 3.4463 2.1532 7.4087
40 1 2.3121 4.9313 7.9598
41 1 2.8900 3.8103 9.2158
42 1 4.0261 4.4538 8.0060
43 1 4.1024 4.2847 4.5525
44 1 4.7523 1.9726 4.7388
45 1 5.0001 2.2429 6.4805
46 1 7.3105 1.4059 5.3816
47 1 11.7600 1.7366 4.7023
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267818465.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:26:25
Heat of formation + Delta-G solvation = -48.408800 kcal
Electronic energy + Delta-G solvation = -29837.977885 eV
Core-core repulsion = 25636.687598 eV
Total energy + Delta-G solvation = -4201.290287 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.73670 -40.09880 -38.75344 -37.48674 -36.02651 -34.25376 -33.96815 -33.21687
-32.13266 -31.64633 -30.30762 -28.62668 -26.81212 -25.01270 -24.13644 -23.91454
-23.17385 -21.50104 -20.86614 -20.25361 -19.33656 -18.56145 -18.44277 -17.19035
-16.93542 -16.72595 -16.33766 -15.69639 -15.32693 -15.15955 -14.86558 -14.64792
-14.35804 -14.21921 -14.11080 -13.78414 -13.64329 -13.37099 -13.18921 -12.96704
-12.85212 -12.52846 -12.12034 -12.05165 -11.81408 -11.70522 -11.50272 -11.38879
-11.31200 -11.17332 -11.15713 -10.97541 -10.71247 -10.60458 -10.37412 -9.99594
-9.59096 -9.57689 -9.16458 -8.67112 -8.25877 -8.19109 -6.33153 -3.84575
0.52610 2.12970 2.16075 2.78349 2.84934 3.01609 3.06064 3.14279
3.70955 3.72362 4.00679 4.09087 4.35347 4.40869 4.50141 4.66274
4.91970 4.98942 4.99799 5.07417 5.15049 5.17595 5.21932 5.22846
5.37023 5.40550 5.45972 5.59659 5.64217 5.70454 5.73247 5.79898
5.81076 5.89101 5.91410 5.95890 5.99427 6.08667 6.16946 6.45425
6.93532 6.96716 7.28689 7.38822 7.55702 7.71032 8.12031 8.57380
8.92798 9.40334 9.80156 10.79892
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.008527 B = 0.003504 C = 0.002885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3282.892087 B = 7989.222965 C = 9703.582649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.054 4.054
3 C 0.086 3.914
4 N -0.493 5.493
5 C 0.208 3.792
6 O -0.189 6.189
7 C -0.118 4.118
8 C 0.611 3.389
9 O -0.511 6.511
10 N -0.717 5.717
11 C 0.079 3.921
12 C 0.076 3.924
13 H 0.092 0.908
14 C -0.113 4.113
15 C -0.142 4.142
16 N -0.652 5.652
17 C 0.040 3.960
18 C 0.450 3.550
19 O -0.564 6.564
20 N -0.590 5.590
21 C -0.305 4.305
22 H 0.120 0.880
23 C 0.042 3.958
24 N -0.881 5.881
25 Si 0.878 3.122
26 H -0.271 1.271
27 H -0.276 1.276
28 H -0.269 1.269
29 H 0.054 0.946
30 H 0.065 0.935
31 H 0.056 0.944
32 H 0.082 0.918
33 H 0.100 0.900
34 H 0.258 0.742
35 H 0.404 0.596
36 H 0.078 0.922
37 H 0.077 0.923
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.050 0.950
41 H 0.047 0.953
42 H 0.071 0.929
43 H 0.346 0.654
44 H 0.047 0.953
45 H 0.092 0.908
46 H 0.370 0.630
47 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.763 -2.253 -4.470 23.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.091 4.091
3 C -0.038 4.038
4 N -0.222 5.222
5 C -0.018 4.018
6 O -0.074 6.074
7 C -0.173 4.173
8 C 0.397 3.603
9 O -0.388 6.388
10 N -0.368 5.368
11 C -0.046 4.046
12 C -0.035 4.035
13 H 0.110 0.890
14 C -0.151 4.151
15 C -0.200 4.200
16 N -0.284 5.284
17 C -0.093 4.093
18 C 0.236 3.764
19 O -0.446 6.446
20 N -0.230 5.230
21 C -0.434 4.434
22 H 0.137 0.863
23 C -0.161 4.161
24 N -0.521 5.521
25 Si 0.704 3.296
26 H -0.197 1.197
27 H -0.201 1.201
28 H -0.195 1.195
29 H 0.073 0.927
30 H 0.084 0.916
31 H 0.075 0.925
32 H 0.101 0.899
33 H 0.118 0.882
34 H 0.274 0.726
35 H 0.240 0.760
36 H 0.096 0.904
37 H 0.095 0.905
38 H 0.083 0.917
39 H 0.085 0.915
40 H 0.069 0.931
41 H 0.066 0.934
42 H 0.090 0.910
43 H 0.166 0.834
44 H 0.065 0.935
45 H 0.110 0.890
46 H 0.202 0.798
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -22.557 -2.182 -4.360 23.078
hybrid contribution 0.154 -1.149 -0.219 1.180
sum -22.403 -3.332 -4.579 23.107
Atomic orbital electron populations
1.21628 0.93759 1.02307 1.01910 1.20184 0.96629 0.87755 1.04576
1.22073 0.97240 0.98132 0.86334 1.70363 1.17217 1.03268 1.31360
1.28403 0.96441 0.97571 0.79344 1.84509 1.64703 1.33662 1.24573
1.22855 1.12715 0.85520 0.96209 1.16261 0.77942 0.84733 0.81367
1.90865 1.46710 1.19347 1.81924 1.45863 1.67380 1.17201 1.06401
1.22324 1.02739 0.99967 0.79587 1.22021 0.91059 0.95514 0.94900
0.89022 1.21508 1.01617 0.99204 0.92781 1.21627 1.03367 0.97285
0.97706 1.60176 1.03818 1.27245 1.37134 1.21825 0.92476 0.92994
1.01960 1.19671 0.85413 0.87037 0.84294 1.90562 1.84772 1.16247
1.53026 1.42210 1.07698 1.08584 1.64463 1.19418 0.80716 0.97879
1.45359 0.86278 1.25033 0.95011 0.98452 0.97587 1.69624 0.98779
1.35440 1.48223 0.86696 0.78542 0.85303 0.79018 1.19655 1.20084
1.19466 0.92711 0.91625 0.92479 0.89919 0.88155 0.72641 0.75977
0.90417 0.90518 0.91655 0.91451 0.93108 0.93422 0.90972 0.83385
0.93536 0.89042 0.79759 0.91597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.28 9.89 37.16 0.37 -0.91 16
2 C -0.05 -0.58 5.92 -27.88 -0.17 -0.74 16
3 C 0.09 1.05 6.41 -82.46 -0.53 0.53 16
4 N -0.49 -5.71 11.26 -10.88 -0.12 -5.84 16
5 C 0.21 1.85 13.21 52.25 0.69 2.54 16
6 O -0.19 -2.04 10.57 4.44 0.05 -1.99 16
7 C -0.12 -1.45 7.18 -36.84 -0.26 -1.72 16
8 C 0.61 7.74 7.79 -12.84 -0.10 7.64 16
9 O -0.51 -7.35 14.79 5.20 0.08 -7.28 16
10 N -0.72 -7.68 5.30 -61.61 -0.33 -8.01 16
11 C 0.08 0.79 4.47 -4.04 -0.02 0.77 16
12 C 0.08 0.75 2.71 -67.72 -0.18 0.56 16
13 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16
14 C -0.11 -1.06 5.31 -26.73 -0.14 -1.20 16
15 C -0.14 -1.47 9.73 37.16 0.36 -1.10 16
16 N -0.65 -8.78 5.41 -107.99 -0.58 -9.36 16
17 C 0.04 0.63 5.30 -4.97 -0.03 0.60 16
18 C 0.45 9.96 7.83 -10.99 -0.09 9.87 16
19 O -0.56 -14.70 15.85 5.55 0.09 -14.61 16
20 N -0.59 -13.98 5.09 -10.97 -0.06 -14.03 16
21 C -0.31 -8.60 10.16 -14.94 -0.15 -8.75 16
22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16
23 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16
24 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16
25 Si 0.88 19.52 27.73 -169.99 -4.71 14.81 16
26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16
29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.10 1.17 6.47 -51.93 -0.34 0.84 16
34 H 0.26 0.90 8.06 -52.48 -0.42 0.48 16
35 H 0.40 4.00 7.03 -40.82 -0.29 3.72 16
36 H 0.08 0.87 6.72 -51.93 -0.35 0.52 16
37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
38 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16
39 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16
40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16
43 H 0.35 4.76 7.29 -39.29 -0.29 4.48 16
44 H 0.05 0.69 6.49 -51.93 -0.34 0.35 16
45 H 0.09 1.31 6.22 -51.93 -0.32 0.98 16
46 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16
47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 389.29 15.07 5.87 5.87
Total: -1.00 -34.89 389.29 -5.97 -40.86
By element:
Atomic # 1 Polarization: 22.08 SS G_CDS: -6.67 Total: 15.41 kcal
Atomic # 6 Polarization: 9.47 SS G_CDS: -0.34 Total: 9.13 kcal
Atomic # 7 Polarization: -61.88 SS G_CDS: -0.31 Total: -62.19 kcal
Atomic # 8 Polarization: -24.09 SS G_CDS: 0.21 Total: -23.88 kcal
Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -34.89 -5.97 -40.86 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267818465.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.552 kcal
(2) G-P(sol) polarization free energy of solvation -34.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds