Wall clock time and date at job start Tue Mar 31 2020 21:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.52993 * 109.47756 * 174.99987 * 3 2 1 6 6 N 1.46495 * 109.47553 * 175.00074 * 5 3 2 7 7 C 1.34784 * 120.00067 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47016 * 179.97438 * 9 7 6 11 11 C 1.34776 * 119.99629 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00622 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99534 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47211 * 180.02562 * 14 13 11 16 16 C 1.34508 * 125.78804 * 89.99709 * 15 14 13 17 17 C 1.41387 * 106.83926 * 180.02562 * 16 15 14 18 18 C 1.34518 * 106.83968 * 0.02562 * 17 16 15 19 19 O 1.34302 * 125.78517 * 269.69684 * 15 14 13 20 20 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 21 21 C 1.36944 * 120.00088 * 84.99964 * 20 3 2 22 22 H 1.08000 * 119.99709 * 359.97438 * 21 20 3 23 23 C 1.38811 * 119.99796 * 180.02562 * 21 20 3 24 24 N 1.31614 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99659 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47223 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.47018 * 209.99690 * 25 23 21 28 28 H 1.48499 * 109.47023 * 329.99851 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47215 * 295.00941 * 5 3 2 35 35 H 1.09010 * 109.46913 * 54.99786 * 5 3 2 36 36 H 0.96997 * 120.00197 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.46759 * 299.99983 * 9 7 6 38 38 H 1.08998 * 109.47009 * 60.00109 * 9 7 6 39 39 H 0.96998 * 119.99868 * 359.97438 * 10 9 7 40 40 H 0.97002 * 119.99980 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.47004 * 300.00343 * 14 13 11 42 42 H 1.08998 * 109.46826 * 60.00213 * 14 13 11 43 43 H 1.08006 * 126.58409 * 0.04612 * 16 15 14 44 44 H 1.08001 * 126.58026 * 179.97438 * 17 16 15 45 45 H 1.07993 * 125.79093 * 180.02562 * 18 17 16 46 46 H 0.96998 * 120.00208 * 264.99507 * 20 3 2 47 47 H 0.97001 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0858 8 8 6.1635 2.1483 0.2573 9 6 5.8982 4.4749 -0.0368 10 7 7.3582 4.4766 0.0835 11 6 8.0394 5.6369 0.0047 12 8 7.4424 6.6821 -0.1666 13 7 9.3826 5.6386 0.1159 14 6 10.1232 6.8997 0.0297 15 6 11.5976 6.6279 0.1831 16 6 12.4562 6.3599 -0.8169 17 6 13.7269 6.1713 -0.2263 18 6 13.5685 6.3348 1.0995 19 8 12.2780 6.6179 1.3410 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6736 -1.3687 22 1 -0.2743 2.6446 -0.5382 23 6 0.0481 3.2937 -2.5550 24 7 0.8887 3.3285 -3.5672 25 14 -1.6393 4.0789 -2.7147 26 1 -1.5675 5.4984 -2.2844 27 1 -2.0842 4.0126 -4.1300 28 1 -2.6076 3.3499 -1.8567 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8499 1.0377 1.0960 35 1 3.9954 0.8311 -0.6660 36 1 3.4409 3.5484 -0.1308 37 1 5.6126 4.8820 -1.0067 38 1 5.4680 5.0876 0.7554 39 1 7.8346 3.6429 0.2206 40 1 9.8590 4.8046 0.2522 41 1 9.9385 7.3640 -0.9390 42 1 9.7925 7.5701 0.8230 43 1 12.2205 6.3005 -1.8693 44 1 14.6478 5.9395 -0.7407 45 1 14.3480 6.2576 1.8430 46 1 2.2718 2.1232 -1.9978 47 1 0.6321 3.7622 -4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267831322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:22 Heat of formation + Delta-G solvation = -41.075984 kcal Electronic energy + Delta-G solvation = -28077.848613 eV Core-core repulsion = 23876.876301 eV Total energy + Delta-G solvation = -4200.972312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.99951 -40.29761 -39.28988 -36.82588 -35.41192 -34.43419 -33.80857 -33.37134 -32.41410 -30.89106 -29.84789 -28.78948 -27.15227 -25.62955 -23.66419 -22.49549 -22.18017 -21.08373 -21.00565 -20.38871 -19.90972 -18.99672 -17.91547 -17.31587 -16.82472 -16.39857 -16.18958 -16.09774 -15.50346 -15.39371 -15.02334 -14.75857 -14.26242 -14.21422 -14.02667 -13.63933 -13.38585 -13.25360 -13.11902 -13.08693 -12.97142 -12.86203 -12.49971 -12.29627 -12.05568 -11.48384 -10.99960 -10.89375 -10.78973 -10.51789 -10.46658 -10.33600 -10.22635 -10.06290 -9.79233 -9.56714 -9.53433 -9.06588 -9.01508 -8.98699 -8.75628 -7.07181 -5.84337 -3.13933 1.14703 2.09192 2.43013 2.67696 2.72329 3.06397 3.38705 3.44686 3.46518 3.47736 4.14435 4.16923 4.52038 4.59764 4.62752 4.86903 5.00055 5.17665 5.34064 5.37104 5.37301 5.41266 5.46432 5.51423 5.52296 5.63667 5.87045 5.91470 5.92306 6.03479 6.07841 6.10127 6.26269 6.38292 6.47748 6.53351 6.56263 6.67789 6.69379 6.80126 6.97701 7.21636 7.64108 7.73629 7.83441 8.32473 8.35641 8.41922 9.44983 9.98966 10.34683 11.37360 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.001809 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.602503 B =15477.770871 C =16601.434868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.704 5.704 7 C 0.507 3.493 8 O -0.556 6.556 9 C 0.118 3.882 10 N -0.730 5.730 11 C 0.710 3.290 12 O -0.588 6.588 13 N -0.746 5.746 14 C 0.223 3.777 15 C -0.037 4.037 16 C -0.183 4.183 17 C -0.218 4.218 18 C -0.030 4.030 19 O -0.171 6.171 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.407 0.593 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.205 0.795 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.187 3.007 9.343 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.009 4.009 6 N -0.355 5.355 7 C 0.292 3.708 8 O -0.435 6.435 9 C -0.010 4.010 10 N -0.388 5.388 11 C 0.409 3.591 12 O -0.466 6.466 13 N -0.403 5.403 14 C 0.099 3.901 15 C -0.087 4.087 16 C -0.203 4.203 17 C -0.237 4.237 18 C -0.099 4.099 19 O -0.067 6.067 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.245 0.755 40 H 0.234 0.766 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.170 0.830 44 H 0.168 0.832 45 H 0.221 0.779 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.814 3.461 9.595 24.081 hybrid contribution -0.361 -0.156 -0.602 0.719 sum 21.453 3.304 8.993 23.495 Atomic orbital electron populations 1.21769 0.95676 0.99648 1.03293 1.22069 0.97021 0.98353 1.00007 1.20574 0.89780 0.92903 0.91545 0.92741 1.21713 0.95793 0.82219 1.01200 1.45878 1.06733 1.11273 1.71606 1.20406 0.83112 0.90527 0.76742 1.90651 1.56007 1.46186 1.50700 1.20922 0.80180 0.94800 1.05054 1.44695 1.06770 1.08927 1.78442 1.15707 0.81222 0.84063 0.78073 1.90964 1.68081 1.30719 1.56841 1.45071 1.05189 1.10183 1.79861 1.19383 0.80648 0.85939 1.04081 1.22327 0.94813 1.08124 0.83446 1.21762 0.92707 1.05369 1.00439 1.21909 0.99310 1.08327 0.94188 1.24154 0.83923 1.03870 0.97921 1.84057 1.20166 1.68835 1.33634 1.42452 1.16830 1.65842 1.11234 1.19195 0.91962 1.27886 0.98001 0.90872 1.24741 0.98090 1.01499 0.96367 1.69652 1.35231 1.48746 1.03988 0.86255 0.84070 0.79350 0.76874 1.21698 1.21885 1.20781 0.94102 0.94883 0.89636 0.93867 0.92525 0.91713 0.91665 0.74871 0.87963 0.88418 0.75537 0.76564 0.88214 0.89689 0.83023 0.83183 0.77883 0.78099 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.16 2.85 2.59 -67.93 -0.18 2.67 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 1.82 5.23 -4.05 -0.02 1.80 16 6 N -0.70 -10.69 5.39 -60.29 -0.32 -11.02 16 7 C 0.51 7.51 7.90 -10.98 -0.09 7.42 16 8 O -0.56 -9.43 15.67 5.55 0.09 -9.35 16 9 C 0.12 1.53 6.15 -5.19 -0.03 1.50 16 10 N -0.73 -8.88 5.53 -66.41 -0.37 -9.25 16 11 C 0.71 9.12 8.57 -86.92 -0.74 8.38 16 12 O -0.59 -9.68 16.34 5.29 0.09 -9.59 16 13 N -0.75 -7.12 5.55 -66.41 -0.37 -7.49 16 14 C 0.22 1.95 6.20 -5.19 -0.03 1.91 16 15 C -0.04 -0.31 6.69 -35.63 -0.24 -0.54 16 16 C -0.18 -1.38 10.81 -39.70 -0.43 -1.81 16 17 C -0.22 -1.43 10.91 -39.70 -0.43 -1.87 16 18 C -0.03 -0.19 12.09 29.42 0.36 0.17 16 19 O -0.17 -1.48 10.65 5.70 0.06 -1.42 16 20 N -0.72 -15.82 4.51 -53.42 -0.24 -16.06 16 21 C -0.24 -5.93 7.75 -15.06 -0.12 -6.05 16 22 H 0.07 1.78 7.32 -52.49 -0.38 1.39 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 25 Si 0.90 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.77 5.99 -51.93 -0.31 1.45 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.41 6.42 8.14 -40.82 -0.33 6.09 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.41 4.60 7.45 -40.82 -0.30 4.30 16 40 H 0.40 3.09 8.48 -40.82 -0.35 2.75 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.20 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.38 9.28 7.80 -40.82 -0.32 8.96 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -31.86 399.92 -8.25 -40.10 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -7.05 Total: 18.72 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.86 Total: 8.65 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -0.58 Total: -69.42 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.23 Total: -20.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.86 -8.25 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267831322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.971 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds