Wall clock time and date at job start Tue Mar 31 2020 21:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.52993 * 109.47756 * 174.99987 * 3 2 1 6 6 N 1.46495 * 109.47553 * 175.00074 * 5 3 2 7 7 C 1.34784 * 120.00067 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47016 * 179.97438 * 9 7 6 11 11 C 1.34776 * 119.99629 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00622 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99534 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99870 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47211 * 180.02562 * 14 13 11 16 16 C 1.34508 * 125.78804 * 89.99709 * 15 14 13 17 17 C 1.41387 * 106.83926 * 180.02562 * 16 15 14 18 18 C 1.34518 * 106.83968 * 0.02562 * 17 16 15 19 19 O 1.34302 * 125.78517 * 269.69684 * 15 14 13 20 20 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 21 21 C 1.36944 * 120.00088 * 84.99964 * 20 3 2 22 22 H 1.08000 * 119.99709 * 359.97438 * 21 20 3 23 23 C 1.38811 * 119.99796 * 180.02562 * 21 20 3 24 24 N 1.31614 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99659 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47223 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.47018 * 209.99690 * 25 23 21 28 28 H 1.48499 * 109.47023 * 329.99851 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47215 * 295.00941 * 5 3 2 35 35 H 1.09010 * 109.46913 * 54.99786 * 5 3 2 36 36 H 0.96997 * 120.00197 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.46759 * 299.99983 * 9 7 6 38 38 H 1.08998 * 109.47009 * 60.00109 * 9 7 6 39 39 H 0.96998 * 119.99868 * 359.97438 * 10 9 7 40 40 H 0.97002 * 119.99980 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.47004 * 300.00343 * 14 13 11 42 42 H 1.08998 * 109.46826 * 60.00213 * 14 13 11 43 43 H 1.08006 * 126.58409 * 0.04612 * 16 15 14 44 44 H 1.08001 * 126.58026 * 179.97438 * 17 16 15 45 45 H 1.07993 * 125.79093 * 180.02562 * 18 17 16 46 46 H 0.96998 * 120.00208 * 264.99507 * 20 3 2 47 47 H 0.97001 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0858 8 8 6.1635 2.1483 0.2573 9 6 5.8982 4.4749 -0.0368 10 7 7.3582 4.4766 0.0835 11 6 8.0394 5.6369 0.0047 12 8 7.4424 6.6821 -0.1666 13 7 9.3826 5.6386 0.1159 14 6 10.1232 6.8997 0.0297 15 6 11.5976 6.6279 0.1831 16 6 12.4562 6.3599 -0.8169 17 6 13.7269 6.1713 -0.2263 18 6 13.5685 6.3348 1.0995 19 8 12.2780 6.6179 1.3410 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6736 -1.3687 22 1 -0.2743 2.6446 -0.5382 23 6 0.0481 3.2937 -2.5550 24 7 0.8887 3.3285 -3.5672 25 14 -1.6393 4.0789 -2.7147 26 1 -1.5675 5.4984 -2.2844 27 1 -2.0842 4.0126 -4.1300 28 1 -2.6076 3.3499 -1.8567 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8499 1.0377 1.0960 35 1 3.9954 0.8311 -0.6660 36 1 3.4409 3.5484 -0.1308 37 1 5.6126 4.8820 -1.0067 38 1 5.4680 5.0876 0.7554 39 1 7.8346 3.6429 0.2206 40 1 9.8590 4.8046 0.2522 41 1 9.9385 7.3640 -0.9390 42 1 9.7925 7.5701 0.8230 43 1 12.2205 6.3005 -1.8693 44 1 14.6478 5.9395 -0.7407 45 1 14.3480 6.2576 1.8430 46 1 2.2718 2.1232 -1.9978 47 1 0.6321 3.7622 -4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267831322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:21 Heat of formation + Delta-G solvation = -65.444989 kcal Electronic energy + Delta-G solvation = -28078.905332 eV Core-core repulsion = 23876.876301 eV Total energy + Delta-G solvation = -4202.029031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.54884 -41.37993 -40.46918 -38.30426 -36.27144 -35.57083 -35.21776 -34.13298 -33.92499 -31.65663 -31.44786 -30.08200 -28.30662 -26.46811 -25.41767 -23.88624 -22.71161 -22.07747 -21.69928 -21.57672 -21.25930 -19.97868 -19.20644 -18.55573 -17.67389 -17.48240 -17.19384 -17.11664 -16.83450 -16.47621 -16.22047 -15.78504 -15.65921 -15.36603 -15.07535 -14.95337 -14.55354 -14.53795 -14.22780 -14.12826 -13.85579 -13.77214 -13.53867 -13.43491 -12.97792 -12.95420 -12.76728 -12.72861 -12.35808 -12.10044 -11.85382 -11.63184 -11.57772 -11.31366 -11.08489 -10.89938 -10.84531 -10.54611 -10.08213 -9.91736 -9.55641 -8.94827 -7.85945 -5.12279 0.55681 1.43726 1.51348 1.51647 1.53038 1.59390 1.73951 2.01067 2.06103 2.35319 2.61613 3.26221 3.47994 3.60910 3.68801 3.93067 3.98940 4.10343 4.14219 4.33308 4.35915 4.39996 4.42061 4.51222 4.51531 4.60142 4.76592 4.88492 4.90773 4.99977 5.13030 5.13416 5.15147 5.22620 5.23196 5.28077 5.45660 5.55762 5.58908 5.64267 5.74816 5.83086 6.15551 6.34718 6.50562 6.91630 7.12268 7.42861 7.43024 8.15351 8.39324 9.36743 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.001809 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.602503 B =15477.770871 C =16601.434868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.575 6.575 9 C 0.124 3.876 10 N -0.725 5.725 11 C 0.709 3.291 12 O -0.626 6.626 13 N -0.731 5.731 14 C 0.225 3.775 15 C -0.054 4.054 16 C -0.185 4.185 17 C -0.231 4.231 18 C -0.027 4.027 19 O -0.189 6.189 20 N -0.727 5.727 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.957 3.043 26 H -0.291 1.291 27 H -0.306 1.306 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.410 0.590 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.160 0.840 44 H 0.170 0.830 45 H 0.238 0.762 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.274 2.283 11.123 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.355 5.355 7 C 0.299 3.701 8 O -0.456 6.456 9 C -0.004 4.004 10 N -0.383 5.383 11 C 0.408 3.592 12 O -0.507 6.507 13 N -0.388 5.388 14 C 0.102 3.898 15 C -0.104 4.104 16 C -0.205 4.205 17 C -0.250 4.250 18 C -0.094 4.094 19 O -0.086 6.086 20 N -0.367 5.367 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.219 1.219 27 H -0.233 1.233 28 H -0.196 1.196 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.251 0.749 40 H 0.246 0.754 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.254 0.746 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.921 2.691 11.434 25.756 hybrid contribution -0.597 -0.016 -1.049 1.207 sum 22.324 2.675 10.385 24.767 Atomic orbital electron populations 1.21703 0.96130 1.00517 1.01768 1.21988 0.96508 0.97419 1.01091 1.20743 0.91074 0.93259 0.89526 0.92167 1.21601 0.94238 0.82453 1.01780 1.45866 1.06954 1.11052 1.71608 1.20585 0.82674 0.90923 0.75927 1.90641 1.56364 1.46971 1.51658 1.20846 0.80728 0.93598 1.05223 1.44612 1.06469 1.09024 1.78225 1.15824 0.81999 0.83519 0.77832 1.90937 1.69087 1.32000 1.58698 1.44992 1.04106 1.11136 1.78600 1.19355 0.81192 0.85326 1.03937 1.22177 0.94512 1.09877 0.83805 1.22018 0.93199 1.04496 1.00802 1.22227 0.99648 1.08573 0.94539 1.24907 0.83533 1.02121 0.98863 1.84045 1.21285 1.69311 1.33924 1.42570 1.15747 1.66021 1.12411 1.19490 0.92572 1.25166 0.97360 0.90172 1.25355 1.00855 1.03628 0.96770 1.69791 1.36753 1.50969 1.04279 0.85372 0.81321 0.78505 0.75960 1.21888 1.23343 1.19647 0.93206 0.92977 0.93357 0.90565 0.93593 0.89773 0.92785 0.74980 0.88424 0.87322 0.74889 0.75366 0.88056 0.90364 0.82217 0.81275 0.74551 0.79517 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.98 0.66 -4.02 16 2 C -0.13 -3.99 5.61 30.59 0.17 -3.81 16 3 C 0.16 5.42 2.59 44.99 0.12 5.54 16 4 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 5 C 0.12 3.69 5.23 86.38 0.45 4.14 16 6 N -0.70 -20.67 5.39 -463.06 -2.49 -23.16 16 7 C 0.51 14.70 7.90 87.66 0.69 15.39 16 8 O -0.58 -18.84 15.67 -3.04 -0.05 -18.89 16 9 C 0.12 3.15 6.15 85.63 0.53 3.67 16 10 N -0.72 -17.19 5.53 -482.29 -2.67 -19.86 16 11 C 0.71 18.03 8.57 179.05 1.53 19.56 16 12 O -0.63 -20.74 16.34 -3.97 -0.06 -20.81 16 13 N -0.73 -13.64 5.55 -482.29 -2.68 -16.32 16 14 C 0.23 3.92 6.20 85.63 0.53 4.45 16 15 C -0.05 -0.86 6.69 24.83 0.17 -0.69 16 16 C -0.19 -2.59 10.81 22.19 0.24 -2.35 16 17 C -0.23 -2.61 10.91 22.19 0.24 -2.37 16 18 C -0.03 -0.28 12.09 66.97 0.81 0.53 16 19 O -0.19 -3.08 10.65 -2.52 -0.03 -3.10 16 20 N -0.73 -31.55 4.51 -322.94 -1.46 -33.01 16 21 C -0.21 -10.48 7.75 84.03 0.65 -9.83 16 22 H 0.08 3.78 7.32 -2.91 -0.02 3.76 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.97 -56.05 13.06 21.65 0.28 -55.77 16 25 Si 0.96 44.23 29.55 68.60 2.03 46.25 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.31 -14.70 7.11 99.48 0.71 -14.00 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.93 5.99 -2.38 -0.01 1.92 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.41 12.51 8.14 -92.71 -0.75 11.75 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.41 8.95 7.45 -92.71 -0.69 8.26 16 40 H 0.41 6.01 8.48 -92.71 -0.79 5.22 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.24 0.52 8.06 -2.91 -0.02 0.50 16 46 H 0.37 18.11 7.80 -92.71 -0.72 17.39 16 47 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -68.33 399.92 -1.79 -70.12 By element: Atomic # 1 Polarization: 49.75 SS G_CDS: -1.92 Total: 47.83 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 7.26 Total: 26.72 kcal Atomic # 7 Polarization: -139.11 SS G_CDS: -9.01 Total: -148.12 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.14 Total: -42.80 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.33 -1.79 -70.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267831322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds