Wall clock time and date at job start Tue Mar 31 2020 20:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46513 * 2 1 4 4 N 1.33690 * 126.27442 * 270.03854 * 3 2 1 5 5 C 1.30617 * 108.99459 * 179.97438 * 4 3 2 6 6 O 1.33667 * 109.15474 * 359.73278 * 5 4 3 7 7 C 1.35345 * 107.68216 * 0.42939 * 6 5 4 8 8 C 1.46721 * 126.63961 * 179.83706 * 7 6 5 9 9 O 1.21689 * 119.99807 * 185.98439 * 8 7 6 10 10 N 1.34774 * 120.00340 * 5.98925 * 8 7 6 11 11 C 1.46500 * 119.99691 * 5.33808 * 10 8 7 12 12 C 1.46500 * 120.00190 * 185.33773 * 10 8 7 13 13 H 1.09001 * 109.46697 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46932 * 239.99901 * 12 10 8 15 15 C 1.52994 * 109.47093 * 119.99818 * 12 10 8 16 16 N 1.46895 * 109.47504 * 304.99903 * 15 12 10 17 17 C 1.46899 * 111.00526 * 180.02562 * 16 15 12 18 18 C 1.50696 * 109.47396 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99841 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00103 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00136 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00357 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00091 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47041 * 90.00590 * 25 23 21 27 27 H 1.48509 * 109.46820 * 210.00287 * 25 23 21 28 28 H 1.48496 * 109.47268 * 330.00449 * 25 23 21 29 29 H 1.08995 * 109.47410 * 299.99645 * 1 2 3 30 30 H 1.08996 * 109.47128 * 60.00136 * 1 2 3 31 31 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47410 * 240.00355 * 2 1 3 33 33 H 1.08996 * 109.47128 * 119.99864 * 2 1 3 34 34 H 1.08001 * 125.42234 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46936 * 275.29759 * 11 10 8 36 36 H 1.08995 * 109.47495 * 35.30153 * 11 10 8 37 37 H 1.08997 * 109.47207 * 155.30382 * 11 10 8 38 38 H 1.08998 * 109.47097 * 60.00238 * 14 12 10 39 39 H 1.09000 * 109.47122 * 179.97438 * 14 12 10 40 40 H 1.08994 * 109.47261 * 299.99673 * 14 12 10 41 41 H 1.08998 * 109.46929 * 65.00263 * 15 12 10 42 42 H 1.09001 * 109.47109 * 185.00234 * 15 12 10 43 43 H 1.00901 * 110.99782 * 56.04274 * 16 15 12 44 44 H 1.08997 * 109.46999 * 300.00159 * 17 16 15 45 45 H 1.09004 * 109.46548 * 60.00259 * 17 16 15 46 46 H 0.96998 * 119.99925 * 0.02562 * 20 18 17 47 47 H 0.96998 * 120.00113 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2951 2.1669 -1.0778 5 6 2.7105 3.3429 -0.6898 6 8 2.7200 3.3860 0.6461 7 6 2.3011 2.1813 1.0992 8 6 2.1583 1.7747 2.5017 9 8 1.8745 0.6235 2.7755 10 7 2.3412 2.6762 3.4867 11 6 2.5670 4.0857 3.1570 12 6 2.3144 2.2467 4.8871 13 1 2.1353 1.1725 4.9342 14 6 1.1943 2.9829 5.6249 15 6 3.6571 2.5698 5.5455 16 7 4.7435 1.9606 4.7668 17 6 6.0509 2.2500 5.3710 18 6 7.1380 1.6099 4.5468 19 8 6.8519 0.9753 3.5535 20 7 8.4282 1.7433 4.9129 21 6 9.4173 1.1613 4.1628 22 1 9.1626 0.5963 3.2783 23 6 10.7475 1.2993 4.5400 24 7 11.0574 1.9871 5.6159 25 14 12.0952 0.5069 3.5175 26 1 12.5506 1.4607 2.4744 27 1 13.2385 0.1510 4.3960 28 1 11.5679 -0.7207 2.8695 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9958 4.1533 -1.3443 35 1 3.6252 4.2455 2.9503 36 1 1.9807 4.3515 2.2774 37 1 2.2630 4.7088 3.9981 38 1 0.2377 2.7527 5.1559 39 1 1.1740 2.6630 6.6667 40 1 1.3729 4.0571 5.5778 41 1 3.7951 3.6505 5.5779 42 1 3.6696 2.1712 6.5599 43 1 4.7139 2.2650 3.8052 44 1 6.2057 3.3285 5.4026 45 1 6.0796 1.8489 6.3841 46 1 8.6570 2.2510 5.7071 47 1 11.9860 2.0832 5.8793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268085313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:35 Heat of formation + Delta-G solvation = -41.893689 kcal Electronic energy + Delta-G solvation = -30066.655370 eV Core-core repulsion = 25865.647600 eV Total energy + Delta-G solvation = -4201.007770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.61329 -40.07887 -38.27957 -37.12422 -35.79592 -34.60304 -33.78368 -33.11614 -31.94594 -31.18902 -29.60997 -27.62816 -27.19527 -25.18224 -24.73227 -23.75200 -23.20197 -22.11997 -20.79225 -19.69360 -19.16991 -17.89835 -17.81138 -17.23031 -16.86822 -16.48145 -16.18341 -15.59252 -15.13875 -15.01815 -14.56907 -14.40833 -14.28730 -14.04641 -13.91282 -13.57030 -13.51732 -13.37602 -13.08718 -12.79190 -12.70140 -12.50357 -12.38020 -11.90450 -11.71093 -11.62780 -11.59811 -11.44244 -11.25088 -11.16834 -11.09304 -10.99296 -10.89909 -10.38563 -10.21105 -10.10231 -9.50282 -9.16912 -8.84886 -8.43052 -8.05273 -7.95066 -6.41187 -3.81799 0.70198 2.23442 2.31050 2.85192 3.00120 3.18264 3.26814 3.33551 3.84778 3.91554 4.05539 4.25861 4.42168 4.56109 4.77636 4.87695 4.92988 5.05477 5.10488 5.16549 5.21827 5.25865 5.26282 5.29969 5.36989 5.37675 5.42803 5.51948 5.58213 5.65129 5.76707 5.82895 5.86391 5.95811 5.96886 5.98549 6.04879 6.22039 6.26490 6.36064 7.03961 7.19942 7.41462 7.55986 7.63210 7.89696 8.07191 8.62334 9.18868 9.54974 10.06951 10.76670 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.002957 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.013015 B = 9465.690538 C =10835.802727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C 0.084 3.916 4 N -0.491 5.491 5 C 0.195 3.805 6 O -0.187 6.187 7 C -0.107 4.107 8 C 0.614 3.386 9 O -0.502 6.502 10 N -0.602 5.602 11 C 0.074 3.926 12 C 0.139 3.861 13 H 0.114 0.886 14 C -0.159 4.159 15 C 0.049 3.951 16 N -0.665 5.665 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.254 0.746 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.085 0.915 43 H 0.347 0.653 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.520 8.001 -3.963 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 C -0.040 4.040 4 N -0.220 5.220 5 C -0.030 4.030 6 O -0.073 6.073 7 C -0.162 4.162 8 C 0.401 3.599 9 O -0.378 6.378 10 N -0.335 5.335 11 C -0.069 4.069 12 C 0.036 3.964 13 H 0.132 0.868 14 C -0.218 4.218 15 C -0.081 4.081 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.104 0.896 43 H 0.167 0.833 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.766 6.262 -4.667 23.125 hybrid contribution 1.408 1.569 0.331 2.134 sum -20.358 7.831 -4.336 22.239 Atomic orbital electron populations 1.21626 0.93992 1.02226 1.01672 1.20210 0.96344 0.87909 1.04940 1.22035 0.97552 0.98044 0.86338 1.70334 1.16968 1.03190 1.31521 1.28328 0.97185 0.97654 0.79874 1.84656 1.64970 1.33617 1.24070 1.22861 1.11942 0.85143 0.96237 1.16321 0.77289 0.84980 0.81301 1.90853 1.47931 1.17641 1.81406 1.47697 1.71166 1.08360 1.06295 1.21902 1.02091 0.81119 1.01777 1.21275 0.94423 1.02113 0.78588 0.86812 1.22114 0.98232 1.00573 1.00855 1.22352 0.90713 0.96717 0.98335 1.59996 1.01014 1.62587 1.06165 1.21679 0.89306 0.98008 0.99174 1.19814 0.83515 0.86218 0.87907 1.90542 1.82344 1.45021 1.28552 1.41853 1.04360 1.47545 1.26337 1.19705 0.85190 1.29515 1.08391 0.87972 1.25251 0.98404 0.97423 0.96848 1.69608 1.19633 1.40888 1.24301 0.85865 0.79827 0.79540 0.79120 1.20441 1.20891 1.19364 0.92682 0.92833 0.91659 0.89941 0.87742 0.73007 0.92217 0.90611 0.90327 0.91937 0.90841 0.92273 0.95265 0.89638 0.83308 0.94064 0.89484 0.77495 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.06 -0.70 6.00 -27.88 -0.17 -0.87 16 3 C 0.08 1.15 6.41 -82.46 -0.53 0.62 16 4 N -0.49 -6.21 11.26 -10.88 -0.12 -6.34 16 5 C 0.19 1.85 13.21 52.25 0.69 2.54 16 6 O -0.19 -2.09 7.75 4.41 0.03 -2.06 16 7 C -0.11 -1.46 6.72 -36.84 -0.25 -1.71 16 8 C 0.61 8.88 7.64 -12.84 -0.10 8.78 16 9 O -0.50 -8.42 14.11 5.20 0.07 -8.34 16 10 N -0.60 -7.13 1.83 -175.47 -0.32 -7.45 16 11 C 0.07 0.67 8.45 59.85 0.51 1.18 16 12 C 0.14 1.55 2.94 -67.93 -0.20 1.35 16 13 H 0.11 1.54 6.91 -51.93 -0.36 1.18 16 14 C -0.16 -1.24 9.18 37.16 0.34 -0.90 16 15 C 0.05 0.59 5.03 -3.83 -0.02 0.57 16 16 N -0.66 -11.29 6.12 -115.07 -0.70 -11.99 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 19 O -0.58 -16.46 15.78 5.54 0.09 -16.37 16 20 N -0.56 -14.58 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.47 6.36 -51.93 -0.33 1.14 16 34 H 0.25 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.64 5.98 -51.93 -0.31 0.33 16 37 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.39 6.67 -51.93 -0.35 0.05 16 41 H 0.03 0.31 7.84 -51.93 -0.41 -0.10 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.35 6.38 7.56 -39.29 -0.30 6.08 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -35.55 391.29 -5.99 -41.54 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.87 Total: 13.55 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 0.29 Total: 13.91 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.48 Total: -64.47 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: 0.20 Total: -26.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.55 -5.99 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268085313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.349 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds