Wall clock time and date at job start Tue Mar 31 2020 20:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46513 * 2 1 4 4 N 1.33690 * 126.27442 * 270.03854 * 3 2 1 5 5 C 1.30617 * 108.99459 * 179.97438 * 4 3 2 6 6 O 1.33667 * 109.15474 * 359.73278 * 5 4 3 7 7 C 1.35345 * 107.68216 * 0.42939 * 6 5 4 8 8 C 1.46721 * 126.63961 * 179.83706 * 7 6 5 9 9 O 1.21689 * 119.99807 * 185.98439 * 8 7 6 10 10 N 1.34774 * 120.00340 * 5.98925 * 8 7 6 11 11 C 1.46500 * 119.99691 * 5.33808 * 10 8 7 12 12 C 1.46500 * 120.00190 * 185.33773 * 10 8 7 13 13 H 1.09001 * 109.46697 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46932 * 239.99901 * 12 10 8 15 15 C 1.52994 * 109.47093 * 119.99818 * 12 10 8 16 16 N 1.46895 * 109.47504 * 304.99903 * 15 12 10 17 17 C 1.46899 * 111.00526 * 180.02562 * 16 15 12 18 18 C 1.50696 * 109.47396 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99841 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00103 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00136 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00357 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00091 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47041 * 90.00590 * 25 23 21 27 27 H 1.48509 * 109.46820 * 210.00287 * 25 23 21 28 28 H 1.48496 * 109.47268 * 330.00449 * 25 23 21 29 29 H 1.08995 * 109.47410 * 299.99645 * 1 2 3 30 30 H 1.08996 * 109.47128 * 60.00136 * 1 2 3 31 31 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47410 * 240.00355 * 2 1 3 33 33 H 1.08996 * 109.47128 * 119.99864 * 2 1 3 34 34 H 1.08001 * 125.42234 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46936 * 275.29759 * 11 10 8 36 36 H 1.08995 * 109.47495 * 35.30153 * 11 10 8 37 37 H 1.08997 * 109.47207 * 155.30382 * 11 10 8 38 38 H 1.08998 * 109.47097 * 60.00238 * 14 12 10 39 39 H 1.09000 * 109.47122 * 179.97438 * 14 12 10 40 40 H 1.08994 * 109.47261 * 299.99673 * 14 12 10 41 41 H 1.08998 * 109.46929 * 65.00263 * 15 12 10 42 42 H 1.09001 * 109.47109 * 185.00234 * 15 12 10 43 43 H 1.00901 * 110.99782 * 56.04274 * 16 15 12 44 44 H 1.08997 * 109.46999 * 300.00159 * 17 16 15 45 45 H 1.09004 * 109.46548 * 60.00259 * 17 16 15 46 46 H 0.96998 * 119.99925 * 0.02562 * 20 18 17 47 47 H 0.96998 * 120.00113 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2951 2.1669 -1.0778 5 6 2.7105 3.3429 -0.6898 6 8 2.7200 3.3860 0.6461 7 6 2.3011 2.1813 1.0992 8 6 2.1583 1.7747 2.5017 9 8 1.8745 0.6235 2.7755 10 7 2.3412 2.6762 3.4867 11 6 2.5670 4.0857 3.1570 12 6 2.3144 2.2467 4.8871 13 1 2.1353 1.1725 4.9342 14 6 1.1943 2.9829 5.6249 15 6 3.6571 2.5698 5.5455 16 7 4.7435 1.9606 4.7668 17 6 6.0509 2.2500 5.3710 18 6 7.1380 1.6099 4.5468 19 8 6.8519 0.9753 3.5535 20 7 8.4282 1.7433 4.9129 21 6 9.4173 1.1613 4.1628 22 1 9.1626 0.5963 3.2783 23 6 10.7475 1.2993 4.5400 24 7 11.0574 1.9871 5.6159 25 14 12.0952 0.5069 3.5175 26 1 12.5506 1.4607 2.4744 27 1 13.2385 0.1510 4.3960 28 1 11.5679 -0.7207 2.8695 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9958 4.1533 -1.3443 35 1 3.6252 4.2455 2.9503 36 1 1.9807 4.3515 2.2774 37 1 2.2630 4.7088 3.9981 38 1 0.2377 2.7527 5.1559 39 1 1.1740 2.6630 6.6667 40 1 1.3729 4.0571 5.5778 41 1 3.7951 3.6505 5.5779 42 1 3.6696 2.1712 6.5599 43 1 4.7139 2.2650 3.8052 44 1 6.2057 3.3285 5.4026 45 1 6.0796 1.8489 6.3841 46 1 8.6570 2.2510 5.7071 47 1 11.9860 2.0832 5.8793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268085313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:34 Heat of formation + Delta-G solvation = -70.766767 kcal Electronic energy + Delta-G solvation = -30067.907401 eV Core-core repulsion = 25865.647600 eV Total energy + Delta-G solvation = -4202.259801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.50802 -41.08216 -40.14799 -38.22493 -36.78216 -36.13266 -35.50339 -34.05492 -33.32055 -32.84065 -30.51889 -29.00491 -28.01810 -26.72610 -25.82497 -24.72372 -24.45552 -23.06516 -21.73798 -21.15734 -20.51939 -19.93029 -18.76594 -18.16251 -17.95201 -17.75032 -17.20900 -17.10352 -16.44536 -16.25650 -15.98249 -15.89926 -15.47836 -15.28347 -15.06555 -14.95719 -14.46519 -14.42983 -14.13613 -14.11256 -13.72200 -13.55711 -13.36444 -13.19009 -13.07914 -12.99043 -12.80173 -12.56419 -12.49772 -12.44436 -12.19116 -12.14406 -12.09329 -11.90340 -11.83556 -11.54411 -11.14553 -10.41870 -10.14773 -10.04868 -9.72667 -9.32959 -8.49807 -5.98660 -0.23824 1.32985 1.35184 1.39238 1.42125 1.52169 1.97292 1.99372 2.01539 2.26785 2.87715 3.09219 3.17179 3.42323 3.52079 3.61941 3.88607 4.13326 4.14683 4.21819 4.24944 4.28947 4.31574 4.37568 4.44276 4.45865 4.52836 4.55168 4.66353 4.68758 4.70788 4.82442 4.87854 4.96198 5.06239 5.08870 5.17720 5.27441 5.31065 5.37663 5.49338 5.85580 6.07766 6.09534 6.30035 6.51036 6.57299 6.89091 7.09691 7.52504 8.08901 8.67587 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.002957 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.013015 B = 9465.690538 C =10835.802727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C 0.071 3.929 4 N -0.522 5.522 5 C 0.218 3.782 6 O -0.184 6.184 7 C -0.130 4.130 8 C 0.604 3.396 9 O -0.541 6.541 10 N -0.597 5.597 11 C 0.072 3.928 12 C 0.138 3.862 13 H 0.083 0.917 14 C -0.148 4.148 15 C 0.052 3.948 16 N -0.687 5.687 17 C 0.067 3.933 18 C 0.434 3.566 19 O -0.628 6.628 20 N -0.570 5.570 21 C -0.336 4.336 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.269 1.269 27 H -0.268 1.268 28 H -0.276 1.276 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.307 0.693 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.336 0.664 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.397 0.603 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.670 10.299 -3.451 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 C -0.052 4.052 4 N -0.251 5.251 5 C -0.007 4.007 6 O -0.071 6.071 7 C -0.185 4.185 8 C 0.391 3.609 9 O -0.420 6.420 10 N -0.329 5.329 11 C -0.070 4.070 12 C 0.035 3.965 13 H 0.101 0.899 14 C -0.206 4.206 15 C -0.077 4.077 16 N -0.320 5.320 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.514 6.514 20 N -0.208 5.208 21 C -0.465 4.465 22 H 0.092 0.908 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.194 1.194 27 H -0.193 1.193 28 H -0.201 1.201 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.322 0.678 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.232 0.768 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.923 8.609 -4.103 23.908 hybrid contribution 1.457 0.912 0.134 1.724 sum -20.466 9.521 -3.969 22.918 Atomic orbital electron populations 1.21548 0.92356 1.03137 1.01441 1.20200 0.97792 0.87705 1.03899 1.22260 0.97503 0.98509 0.86970 1.70343 1.18792 1.04484 1.31432 1.29580 0.93746 0.97739 0.79590 1.84660 1.64981 1.32559 1.24897 1.22733 1.13628 0.86166 0.96022 1.16581 0.77191 0.84945 0.82147 1.90818 1.49959 1.19161 1.82107 1.47816 1.69882 1.09097 1.06107 1.22072 1.01719 0.79763 1.03408 1.21318 0.95429 1.01077 0.78685 0.89890 1.22042 0.96340 1.01225 1.01017 1.22485 0.89058 0.98019 0.98185 1.59989 1.01646 1.64225 1.06115 1.21545 0.87610 0.98962 0.98442 1.20963 0.84190 0.85057 0.87612 1.90511 1.83133 1.46940 1.30840 1.41902 1.04748 1.47747 1.26381 1.19629 0.86797 1.31296 1.08827 0.90751 1.26010 0.99793 0.97401 0.97800 1.69657 1.20584 1.40828 1.24823 0.84959 0.77205 0.78397 0.77963 1.19412 1.19252 1.20105 0.93650 0.92107 0.90205 0.89538 0.90051 0.67836 0.93116 0.89947 0.87399 0.92303 0.89293 0.90251 0.92624 0.88184 0.84586 0.91210 0.87418 0.76847 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.89 71.98 0.71 -2.01 16 2 C -0.06 -1.55 6.00 29.85 0.18 -1.37 16 3 C 0.07 2.01 6.41 41.83 0.27 2.28 16 4 N -0.52 -12.97 11.26 -303.12 -3.41 -16.38 16 5 C 0.22 3.75 13.21 130.42 1.72 5.48 16 6 O -0.18 -3.97 7.75 -7.13 -0.06 -4.03 16 7 C -0.13 -3.66 6.72 24.05 0.16 -3.49 16 8 C 0.60 18.23 7.64 86.46 0.66 18.89 16 9 O -0.54 -19.54 14.11 -4.31 -0.06 -19.60 16 10 N -0.60 -13.92 1.83 -827.28 -1.52 -15.44 16 11 C 0.07 1.18 8.45 127.77 1.08 2.26 16 12 C 0.14 2.95 2.94 44.99 0.13 3.08 16 13 H 0.08 2.32 6.91 -2.39 -0.02 2.30 16 14 C -0.15 -1.94 9.18 71.98 0.66 -1.28 16 15 C 0.05 1.13 5.03 86.30 0.43 1.57 16 16 N -0.69 -22.92 6.12 -517.96 -3.17 -26.09 16 17 C 0.07 2.32 6.17 85.56 0.53 2.85 16 18 C 0.43 21.44 7.82 87.66 0.69 22.13 16 19 O -0.63 -36.88 15.78 -3.08 -0.05 -36.93 16 20 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 21 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 22 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 24 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 25 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.54 6.36 -2.39 -0.02 2.52 16 34 H 0.31 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.25 5.98 -2.39 -0.01 1.24 16 37 H 0.11 1.11 6.44 -2.39 -0.02 1.10 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.74 6.67 -2.39 -0.02 0.72 16 41 H 0.06 0.96 7.84 -2.39 -0.02 0.94 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.34 12.43 7.56 -89.69 -0.68 11.75 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -81.32 391.29 0.54 -80.78 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.39 Total: 41.46 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 8.50 Total: 31.56 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -9.44 Total: -138.87 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.16 Total: -60.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -81.32 0.54 -80.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268085313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.012 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds