Wall clock time and date at job start Tue Mar 31 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21613 * 119.99733 * 359.97438 * 7 6 5 9 9 C 1.47423 * 120.00158 * 179.97438 * 7 6 5 10 10 N 1.36059 * 126.44743 * 359.67946 * 9 7 6 11 11 C 1.29934 * 108.47564 * 179.86295 * 10 9 7 12 12 C 1.50703 * 125.37910 * 180.18998 * 11 10 9 13 13 O 1.34049 * 109.24558 * 0.41179 * 11 10 9 14 14 C 1.34253 * 108.22299 * 359.74090 * 13 11 10 15 15 C 1.50702 * 126.52766 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47354 * 119.99560 * 25 23 21 28 28 H 1.48505 * 109.47091 * 239.99582 * 25 23 21 29 29 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 30 30 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 31 31 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47050 * 180.27488 * 12 11 10 38 38 H 1.09002 * 109.47303 * 300.27557 * 12 11 10 39 39 H 1.08997 * 109.47147 * 60.27865 * 12 11 10 40 40 H 1.09001 * 109.47499 * 269.96234 * 15 14 13 41 41 H 1.09007 * 109.46846 * 29.95895 * 15 14 13 42 42 H 1.09000 * 109.47814 * 149.95746 * 15 14 13 43 43 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1685 2.1447 -0.2115 9 6 5.8865 4.4442 0.0672 10 7 5.1334 5.5641 0.2403 11 6 5.9290 6.5894 0.3047 12 6 5.4950 8.0198 0.4964 13 8 7.1964 6.1745 0.1688 14 6 7.1877 4.8403 0.0199 15 6 8.3899 3.9504 -0.1640 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.6684 3.7487 8.4800 27 1 1.0174 1.6712 9.6818 28 1 2.7997 3.3103 9.5500 29 1 -0.3633 0.4300 0.9333 30 1 -0.3633 0.5933 -0.8391 31 1 -0.3633 -1.0234 -0.0944 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 6.3720 8.6672 0.5074 38 1 4.8374 8.3128 -0.3220 39 1 4.9620 8.1141 1.4425 40 1 8.6081 3.8494 -1.2272 41 1 9.2487 4.3906 0.3429 42 1 8.1828 2.9675 0.2593 43 1 1.8236 3.0952 1.2081 44 1 3.3737 1.6315 2.3296 45 1 2.0702 0.4237 2.4306 46 1 2.9164 1.0162 4.9164 47 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269485887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:14 Heat of formation + Delta-G solvation = -57.447178 kcal Electronic energy + Delta-G solvation = -29662.320117 eV Core-core repulsion = 25460.637897 eV Total energy + Delta-G solvation = -4201.682220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.64295 -39.87349 -38.50356 -37.23075 -35.13538 -34.06520 -33.82278 -33.27605 -31.93878 -31.14929 -30.36857 -28.81267 -26.84903 -26.07326 -24.30441 -23.86338 -22.77749 -21.46386 -20.63005 -20.10424 -19.03477 -18.13907 -17.87442 -17.27467 -16.79657 -16.08415 -16.01087 -15.44480 -15.20927 -14.59710 -14.47579 -14.37406 -14.23111 -14.00624 -13.73687 -13.68734 -13.57481 -13.42809 -13.17024 -12.98882 -12.96340 -12.64925 -12.56666 -12.13845 -11.89074 -11.65525 -11.46505 -11.38075 -11.26751 -11.02992 -10.96558 -10.83590 -10.54389 -10.32525 -10.20740 -10.19334 -9.48585 -9.26525 -8.89158 -8.45901 -8.04500 -7.92400 -6.38514 -3.79141 0.89632 1.81500 2.24479 2.96310 3.17994 3.18641 3.28177 3.35537 3.66273 3.94958 4.12175 4.35046 4.37054 4.56168 4.68593 4.80996 4.91710 5.08476 5.09974 5.14918 5.16864 5.22192 5.23471 5.29658 5.37833 5.40878 5.54598 5.59462 5.64879 5.78905 5.80492 5.83174 5.90531 5.95742 6.02520 6.10873 6.25259 6.29981 6.34436 6.57493 7.16341 7.18615 7.45482 7.58190 7.59825 8.03892 8.09753 8.64920 9.21372 9.58252 10.09879 10.79380 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007745 B = 0.003467 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.334800 B = 8075.036644 C =10179.601337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.080 3.920 6 N -0.710 5.710 7 C 0.606 3.394 8 O -0.536 6.536 9 C -0.076 4.076 10 N -0.457 5.457 11 C 0.195 3.805 12 C -0.057 4.057 13 O -0.198 6.198 14 C 0.039 3.961 15 C -0.076 4.076 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.346 0.654 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 6.030 -18.281 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.046 4.046 6 N -0.362 5.362 7 C 0.392 3.608 8 O -0.413 6.413 9 C -0.196 4.196 10 N -0.187 5.187 11 C -0.014 4.014 12 C -0.115 4.115 13 O -0.085 6.085 14 C -0.017 4.017 15 C -0.132 4.132 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.166 0.834 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.712 5.558 -18.139 20.123 hybrid contribution 1.518 0.581 0.869 1.844 sum 8.230 6.139 -17.269 20.091 Atomic orbital electron populations 1.21619 0.94603 1.00571 1.03097 1.21504 0.97363 0.94231 1.01998 1.21992 0.90326 0.97335 0.93803 0.89274 1.22275 0.96765 0.82681 1.02849 1.45731 1.07032 1.10336 1.73091 1.16649 0.82529 0.85253 0.76381 1.90775 1.55882 1.44259 1.50417 1.21430 0.90522 0.94329 1.13311 1.70728 1.33582 0.97189 1.17211 1.26234 0.76399 0.98393 1.00376 1.20323 1.02677 0.83259 1.05194 1.84330 1.33037 1.22314 1.68863 1.23710 0.97939 0.80648 0.99409 1.20597 0.91137 0.97436 1.04021 1.60206 1.60587 1.07596 1.00029 1.21771 0.96344 1.00013 0.90729 1.19799 0.86119 0.86829 0.84418 1.90519 1.35769 1.33527 1.86747 1.41863 1.39053 1.34604 1.04653 1.19741 1.22565 1.17502 0.82896 0.87911 1.25252 0.96576 0.96715 0.99437 1.69628 1.30062 1.28236 1.26420 0.85820 0.78578 0.79004 0.81056 1.19223 1.20740 1.20832 0.91011 0.93207 0.93524 0.91798 0.91395 0.90582 0.90899 0.75570 0.89268 0.88264 0.87983 0.89095 0.90088 0.86878 0.83374 0.93655 0.89286 0.77560 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.73 37.16 0.36 -1.29 16 2 C -0.11 -1.25 5.31 -26.73 -0.14 -1.39 16 3 C 0.08 0.90 2.71 -67.72 -0.18 0.72 16 4 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 5 C 0.08 0.97 4.47 -4.04 -0.02 0.95 16 6 N -0.71 -9.48 5.31 -61.39 -0.33 -9.80 16 7 C 0.61 9.04 7.81 -12.52 -0.10 8.94 16 8 O -0.54 -8.70 14.80 5.27 0.08 -8.63 16 9 C -0.08 -1.09 6.99 -83.02 -0.58 -1.67 16 10 N -0.46 -6.32 11.06 -7.65 -0.08 -6.41 16 11 C 0.19 2.22 8.30 -13.08 -0.11 2.11 16 12 C -0.06 -0.37 10.51 36.01 0.38 0.00 16 13 O -0.20 -2.33 10.73 6.52 0.07 -2.26 16 14 C 0.04 0.49 7.44 -35.08 -0.26 0.23 16 15 C -0.08 -0.71 9.88 36.01 0.36 -0.35 16 16 N -0.65 -10.10 5.41 -107.99 -0.58 -10.69 16 17 C 0.04 0.78 5.30 -4.97 -0.03 0.76 16 18 C 0.44 10.61 7.83 -10.99 -0.09 10.52 16 19 O -0.58 -15.87 15.85 5.55 0.09 -15.78 16 20 N -0.56 -14.63 5.29 -10.97 -0.06 -14.69 16 21 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.48 16 34 H 0.08 1.03 6.71 -51.93 -0.35 0.68 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.41 5.36 6.96 -40.82 -0.28 5.07 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.11 1.22 6.48 -51.93 -0.34 0.89 16 43 H 0.35 5.60 7.29 -39.29 -0.29 5.31 16 44 H 0.05 0.79 6.49 -51.93 -0.34 0.46 16 45 H 0.09 1.48 6.22 -51.93 -0.32 1.16 16 46 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -34.39 392.93 -6.56 -40.94 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -6.71 Total: 17.88 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.65 Total: 11.45 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -0.33 Total: -65.87 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.24 Total: -26.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.39 -6.56 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269485887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.506 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds