Wall clock time and date at job start Tue Mar 31 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21613 * 119.99733 * 359.97438 * 7 6 5 9 9 C 1.47423 * 120.00158 * 179.97438 * 7 6 5 10 10 N 1.36059 * 126.44743 * 359.67946 * 9 7 6 11 11 C 1.29934 * 108.47564 * 179.86295 * 10 9 7 12 12 C 1.50703 * 125.37910 * 180.18998 * 11 10 9 13 13 O 1.34049 * 109.24558 * 0.41179 * 11 10 9 14 14 C 1.34253 * 108.22299 * 359.74090 * 13 11 10 15 15 C 1.50702 * 126.52766 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47354 * 119.99560 * 25 23 21 28 28 H 1.48505 * 109.47091 * 239.99582 * 25 23 21 29 29 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 30 30 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 31 31 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47050 * 180.27488 * 12 11 10 38 38 H 1.09002 * 109.47303 * 300.27557 * 12 11 10 39 39 H 1.08997 * 109.47147 * 60.27865 * 12 11 10 40 40 H 1.09001 * 109.47499 * 269.96234 * 15 14 13 41 41 H 1.09007 * 109.46846 * 29.95895 * 15 14 13 42 42 H 1.09000 * 109.47814 * 149.95746 * 15 14 13 43 43 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1685 2.1447 -0.2115 9 6 5.8865 4.4442 0.0672 10 7 5.1334 5.5641 0.2403 11 6 5.9290 6.5894 0.3047 12 6 5.4950 8.0198 0.4964 13 8 7.1964 6.1745 0.1688 14 6 7.1877 4.8403 0.0199 15 6 8.3899 3.9504 -0.1640 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.6684 3.7487 8.4800 27 1 1.0174 1.6712 9.6818 28 1 2.7997 3.3103 9.5500 29 1 -0.3633 0.4300 0.9333 30 1 -0.3633 0.5933 -0.8391 31 1 -0.3633 -1.0234 -0.0944 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 6.3720 8.6672 0.5074 38 1 4.8374 8.3128 -0.3220 39 1 4.9620 8.1141 1.4425 40 1 8.6081 3.8494 -1.2272 41 1 9.2487 4.3906 0.3429 42 1 8.1828 2.9675 0.2593 43 1 1.8236 3.0952 1.2081 44 1 3.3737 1.6315 2.3296 45 1 2.0702 0.4237 2.4306 46 1 2.9164 1.0162 4.9164 47 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269485887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:14 Heat of formation + Delta-G solvation = -86.308006 kcal Electronic energy + Delta-G solvation = -29663.571617 eV Core-core repulsion = 25460.637897 eV Total energy + Delta-G solvation = -4202.933720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.55595 -41.02755 -40.15899 -38.64348 -36.09422 -35.97784 -35.04329 -34.10433 -33.36632 -33.01137 -31.04809 -29.92990 -28.28382 -27.15028 -26.06342 -24.86563 -23.71070 -22.38447 -21.85544 -21.37237 -20.55996 -19.87329 -19.15031 -18.34961 -18.16941 -17.16282 -17.13231 -16.89220 -16.57966 -16.24477 -15.91472 -15.56369 -15.46237 -15.25126 -15.07394 -14.66662 -14.49294 -14.45066 -14.30865 -14.00432 -13.78338 -13.61535 -13.56326 -13.49366 -13.23906 -13.13358 -12.89577 -12.70969 -12.41784 -12.37721 -12.29583 -12.12483 -11.94047 -11.79713 -11.55461 -11.50463 -11.29248 -10.37770 -10.32116 -10.02717 -9.81722 -9.39668 -8.47793 -5.96798 -0.06220 0.86666 1.35166 1.39272 1.40002 1.54716 1.94142 2.03704 2.11447 2.27849 2.81151 2.92459 3.18988 3.48265 3.50870 3.59614 3.70128 4.01821 4.09206 4.17558 4.27421 4.28316 4.36494 4.43791 4.51928 4.55500 4.61480 4.62275 4.62422 4.66980 4.75097 4.85087 4.92125 4.97255 5.04230 5.17933 5.19270 5.25822 5.37833 5.39576 5.58344 5.85526 6.06258 6.14629 6.31986 6.47120 6.58041 6.94178 7.11186 7.54174 8.09349 8.70021 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007745 B = 0.003467 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.334800 B = 8075.036644 C =10179.601337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.085 3.915 4 H 0.109 0.891 5 C 0.084 3.916 6 N -0.707 5.707 7 C 0.600 3.400 8 O -0.556 6.556 9 C -0.109 4.109 10 N -0.488 5.488 11 C 0.197 3.803 12 C -0.057 4.057 13 O -0.197 6.197 14 C 0.040 3.960 15 C -0.073 4.073 16 N -0.659 5.659 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.408 0.592 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.341 0.659 44 H 0.051 0.949 45 H 0.105 0.895 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 6.388 -19.053 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.025 4.025 4 H 0.127 0.873 5 C -0.041 4.041 6 N -0.358 5.358 7 C 0.387 3.613 8 O -0.436 6.436 9 C -0.228 4.228 10 N -0.218 5.218 11 C -0.012 4.012 12 C -0.114 4.114 13 O -0.085 6.085 14 C -0.017 4.017 15 C -0.129 4.129 16 N -0.291 5.291 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.161 0.839 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.227 0.773 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.316 5.888 -18.930 21.131 hybrid contribution 1.323 0.509 1.048 1.763 sum 8.639 6.397 -17.882 20.865 Atomic orbital electron populations 1.21573 0.94966 1.01283 1.01741 1.21535 0.96918 0.93549 1.02941 1.22083 0.90153 0.97903 0.92384 0.87336 1.22284 0.96649 0.82000 1.03144 1.45754 1.06693 1.10789 1.72551 1.16848 0.82786 0.85539 0.76147 1.90749 1.56322 1.44887 1.51617 1.21522 0.91565 0.94329 1.15392 1.70704 1.34493 0.97747 1.18871 1.27229 0.76013 0.99594 0.98372 1.20614 1.04087 0.80778 1.05882 1.84359 1.33305 1.21967 1.68867 1.24214 0.98271 0.81127 0.98047 1.20686 0.90740 0.96138 1.05335 1.60208 1.60694 1.07472 1.00716 1.21527 0.96361 1.00214 0.88657 1.20828 0.84910 0.85972 0.85618 1.90485 1.37265 1.35095 1.87533 1.41944 1.39439 1.34874 1.04948 1.19710 1.23584 1.18294 0.84605 0.90244 1.26061 0.96338 0.96951 1.01976 1.69693 1.30333 1.28702 1.27584 0.84868 0.78200 0.78160 0.77092 1.19640 1.19491 1.19646 0.94259 0.92150 0.92287 0.88962 0.92333 0.91898 0.89364 0.75519 0.86744 0.86584 0.87712 0.87299 0.87804 0.88442 0.83931 0.93089 0.87677 0.77303 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.73 71.98 0.70 -2.30 16 2 C -0.11 -2.23 5.31 30.59 0.16 -2.07 16 3 C 0.08 1.88 2.71 44.91 0.12 2.00 16 4 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 5 C 0.08 1.96 4.47 86.38 0.39 2.35 16 6 N -0.71 -18.76 5.31 -466.38 -2.47 -21.23 16 7 C 0.60 18.06 7.81 86.66 0.68 18.74 16 8 O -0.56 -18.18 14.80 -4.07 -0.06 -18.24 16 9 C -0.11 -3.15 6.99 40.41 0.28 -2.87 16 10 N -0.49 -13.55 11.06 -293.04 -3.24 -16.79 16 11 C 0.20 4.33 8.30 88.39 0.73 5.07 16 12 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 13 O -0.20 -4.45 10.73 0.43 0.00 -4.44 16 14 C 0.04 0.99 7.44 25.19 0.19 1.18 16 15 C -0.07 -1.30 9.88 71.24 0.70 -0.60 16 16 N -0.66 -20.25 5.41 -495.58 -2.68 -22.93 16 17 C 0.06 2.32 5.30 85.55 0.45 2.77 16 18 C 0.44 21.58 7.83 87.66 0.69 22.26 16 19 O -0.62 -34.74 15.85 -3.05 -0.05 -34.79 16 20 N -0.57 -30.60 5.29 -307.00 -1.62 -32.22 16 21 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 24 N -0.92 -51.06 13.05 21.66 0.28 -50.78 16 25 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 29 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.30 6.28 -2.39 -0.01 1.29 16 34 H 0.06 1.66 6.71 -2.39 -0.02 1.64 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.41 10.78 6.96 -92.70 -0.65 10.13 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.10 2.10 6.48 -2.39 -0.02 2.09 16 43 H 0.34 11.11 7.29 -89.70 -0.65 10.45 16 44 H 0.05 1.79 6.49 -2.39 -0.02 1.78 16 45 H 0.11 3.46 6.22 -2.39 -0.01 3.44 16 46 H 0.39 20.21 7.90 -92.71 -0.73 19.47 16 47 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -75.92 392.93 -1.68 -77.60 By element: Atomic # 1 Polarization: 51.25 SS G_CDS: -0.99 Total: 50.26 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 7.12 Total: 27.80 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -9.73 Total: -143.95 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.10 Total: -57.47 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.92 -1.68 -77.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269485887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.704 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds