Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00078 * 2 1 3 5 5 C 1.53008 * 109.46753 * 174.99899 * 4 2 1 6 6 H 1.08996 * 109.46976 * 54.99865 * 5 4 2 7 7 C 1.53003 * 109.46955 * 175.00214 * 5 4 2 8 8 N 1.46497 * 109.47248 * 174.99983 * 7 5 4 9 9 C 1.36938 * 120.00291 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99336 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99929 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99795 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00046 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47007 * 90.00317 * 13 11 9 15 15 H 1.48503 * 109.46989 * 210.00342 * 13 11 9 16 16 H 1.48491 * 109.47281 * 329.99973 * 13 11 9 17 17 N 1.46499 * 109.47250 * 294.99725 * 5 4 2 18 18 C 1.34779 * 119.99952 * 85.00042 * 17 5 4 19 19 O 1.21626 * 119.99860 * 5.40371 * 18 17 5 20 20 C 1.47299 * 120.00333 * 185.40493 * 18 17 5 21 21 C 1.38321 * 120.73669 * 354.96496 * 20 18 17 22 22 N 1.34953 * 119.02275 * 180.02562 * 21 20 18 23 23 C 1.46500 * 119.70582 * 179.97438 * 22 21 20 24 24 C 1.34454 * 120.58831 * 0.25337 * 22 21 20 25 25 O 1.21902 * 119.19776 * 179.72158 * 24 22 21 26 26 N 1.33326 * 121.59866 * 359.47794 * 24 22 21 27 27 C 1.32222 * 120.92966 * 0.52200 * 26 24 22 28 28 O 1.35008 * 120.33232 * 179.72343 * 27 26 24 29 29 H 1.08994 * 109.46563 * 299.99975 * 1 2 3 30 30 H 1.08994 * 109.46772 * 60.00225 * 1 2 3 31 31 H 1.08995 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47018 * 240.00224 * 2 1 3 33 33 H 1.09001 * 109.47450 * 299.99801 * 3 2 1 34 34 H 1.09002 * 109.47374 * 59.99887 * 3 2 1 35 35 H 1.09002 * 109.47368 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47193 * 55.00585 * 4 2 1 37 37 H 1.08990 * 109.47389 * 294.99802 * 4 2 1 38 38 H 1.09007 * 109.46820 * 295.00196 * 7 5 4 39 39 H 1.09003 * 109.47390 * 54.99610 * 7 5 4 40 40 H 0.97006 * 119.99331 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00087 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00617 * 265.00874 * 17 5 4 43 43 H 1.08002 * 120.48846 * 0.04547 * 21 20 18 44 44 H 1.09003 * 109.47102 * 89.99865 * 23 22 21 45 45 H 1.09004 * 109.46793 * 330.00077 * 23 22 21 46 46 H 1.08998 * 109.47488 * 209.99861 * 23 22 21 47 47 H 0.96698 * 114.00038 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.8311 1.1879 6 1 3.9955 0.1611 1.0526 7 6 4.0853 -1.4395 2.4917 8 7 5.5305 -1.6552 2.3874 9 6 6.2203 -2.1939 3.4406 10 1 5.6986 -2.4602 4.3479 11 6 7.5898 -2.3978 3.3418 12 7 8.2526 -2.9161 4.3539 13 14 8.4917 -1.9378 1.7720 14 1 8.9586 -0.5311 1.8634 15 1 9.6601 -2.8364 1.5910 16 1 7.5736 -2.0803 0.6137 17 7 3.9481 -1.6872 0.0625 18 6 4.0652 -1.1631 -1.1736 19 8 3.9497 0.0363 -1.3390 20 6 4.3332 -2.0428 -2.3243 21 6 4.5699 -3.3933 -2.1417 22 7 4.8121 -4.1673 -3.2204 23 6 5.0653 -5.5994 -3.0442 24 6 4.8287 -3.6346 -4.4548 25 8 5.0552 -4.3563 -5.4108 26 7 4.5987 -2.3373 -4.6591 27 6 4.3547 -1.5227 -3.6466 28 8 4.1289 -0.2100 -3.8667 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6055 -1.7199 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 3.8781 -0.7594 3.3181 39 1 3.5878 -2.3925 2.6720 40 1 5.9989 -1.4163 1.5721 41 1 9.2096 -3.0589 4.2848 42 1 4.1173 -2.6314 0.2070 43 1 4.5607 -3.8221 -1.1505 44 1 4.1219 -6.1436 -3.0908 45 1 5.5349 -5.7688 -2.0752 46 1 5.7272 -5.9515 -3.8353 47 1 4.1651 0.0444 -4.7990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271310841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -52.467209 kcal Electronic energy + Delta-G solvation = -30939.294302 eV Core-core repulsion = 26737.828029 eV Total energy + Delta-G solvation = -4201.466272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20265 -40.08364 -38.89193 -37.18865 -36.73518 -35.18831 -34.93267 -33.72016 -32.12679 -31.12333 -29.38071 -27.97545 -26.99738 -25.88141 -25.36059 -24.17640 -22.60738 -21.50407 -20.60439 -20.07296 -19.84100 -18.51128 -18.37370 -17.55923 -16.99941 -16.43787 -16.14419 -15.79961 -15.43655 -14.98336 -14.84539 -14.59550 -14.34661 -14.11590 -13.93748 -13.65614 -13.56873 -13.47018 -13.25437 -13.02074 -12.85483 -12.36329 -12.25237 -12.12923 -11.89197 -11.75294 -11.38477 -11.22636 -11.19797 -10.96945 -10.61419 -10.44762 -10.39704 -10.34561 -10.31214 -10.17310 -9.74081 -9.71570 -9.06501 -9.01101 -8.81496 -7.38130 -5.89016 -3.25742 0.18687 0.97490 1.96123 2.84784 2.94605 3.10493 3.23211 3.30987 3.37117 3.52113 3.74916 3.97920 4.39995 4.46810 4.64747 4.73240 4.79991 4.82177 4.94715 5.04437 5.04959 5.19383 5.36421 5.40515 5.42487 5.53938 5.54836 5.73142 5.77865 5.85809 5.88515 5.90873 5.97386 6.01866 6.15384 6.26349 6.33828 6.46743 6.53455 6.69345 6.72724 6.85511 7.38497 7.55248 7.78574 7.86412 8.27017 8.29947 9.08186 9.80146 9.99248 11.29032 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007770 B = 0.005093 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.851002 B = 5496.245803 C = 7901.582528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.122 4.122 5 C 0.134 3.866 6 H 0.096 0.904 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.883 3.117 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.280 1.280 17 N -0.715 5.715 18 C 0.576 3.424 19 O -0.507 6.507 20 C -0.295 4.295 21 C 0.243 3.757 22 N -0.517 5.517 23 C 0.055 3.945 24 C 0.654 3.346 25 O -0.528 6.528 26 N -0.617 5.617 27 C 0.496 3.504 28 O -0.410 6.410 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.396 0.604 43 H 0.190 0.810 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -0.253 -12.535 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.161 4.161 5 C 0.030 3.970 6 H 0.114 0.886 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.578 5.578 13 Si 0.713 3.287 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.206 1.206 17 N -0.368 5.368 18 C 0.361 3.639 19 O -0.382 6.382 20 C -0.308 4.308 21 C 0.102 3.898 22 N -0.231 5.231 23 C -0.087 4.087 24 C 0.356 3.644 25 O -0.402 6.402 26 N -0.376 5.376 27 C 0.294 3.706 28 O -0.201 6.201 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.231 0.769 43 H 0.206 0.794 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -13.645 0.236 -13.357 19.096 hybrid contribution 0.935 -0.408 -0.715 1.246 sum -12.710 -0.172 -14.071 18.962 Atomic orbital electron populations 1.21855 0.96202 1.00976 1.01288 1.21109 0.94415 0.97260 0.98329 1.21850 1.03067 0.94921 0.99936 1.22018 0.94674 1.00820 0.98601 1.21477 0.94366 0.95708 0.85493 0.88645 1.20958 0.85616 0.98045 0.93304 1.42704 1.03104 1.77582 1.16741 1.19036 0.90753 1.33629 0.94328 0.89095 1.24656 0.96242 1.00854 0.97026 1.69693 1.08041 1.49704 1.30381 0.86612 0.79699 0.78451 0.83945 1.20969 1.21747 1.20643 1.45901 1.70554 1.13070 1.07262 1.17193 0.77303 0.87501 0.81901 1.90844 1.49404 1.13583 1.84406 1.19834 1.23592 0.93297 0.94098 1.22980 0.83353 0.89854 0.93589 1.46261 1.56452 1.12282 1.08055 1.22391 1.04287 0.76692 1.05340 1.17445 0.79616 0.85624 0.81681 1.90990 1.52064 1.58665 1.38498 1.69719 1.33468 1.03537 1.30882 1.20192 0.77801 0.84536 0.88110 1.85279 1.82345 1.17921 1.34563 0.92979 0.93208 0.93327 0.91063 0.93715 0.94076 0.90490 0.91768 0.90753 0.93870 0.94963 0.80443 0.92950 0.76877 0.79358 0.89614 0.88572 0.87928 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.06 2.38 -90.62 -0.22 -1.28 16 3 C -0.14 -1.74 8.12 37.15 0.30 -1.44 16 4 C -0.12 -1.35 4.36 -26.73 -0.12 -1.47 16 5 C 0.13 1.78 2.33 -67.93 -0.16 1.62 16 6 H 0.10 1.46 5.86 -51.93 -0.30 1.16 16 7 C 0.15 2.40 5.82 -4.04 -0.02 2.38 16 8 N -0.76 -15.85 5.24 -59.91 -0.31 -16.16 16 9 C -0.25 -6.44 10.47 -15.06 -0.16 -6.60 16 10 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 11 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -27.83 13.97 55.49 0.78 -27.05 16 13 Si 0.88 21.04 27.74 -169.99 -4.71 16.32 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 17 N -0.72 -8.66 4.42 -54.92 -0.24 -8.90 16 18 C 0.58 7.52 6.10 -12.58 -0.08 7.44 16 19 O -0.51 -7.80 10.69 -15.92 -0.17 -7.97 16 20 C -0.30 -3.39 5.90 -104.70 -0.62 -4.01 16 21 C 0.24 2.16 9.90 -16.15 -0.16 2.00 16 22 N -0.52 -5.17 2.96 -128.87 -0.38 -5.56 16 23 C 0.05 0.36 10.35 59.85 0.62 0.98 16 24 C 0.65 9.22 8.32 -88.49 -0.74 8.48 16 25 O -0.53 -8.97 16.66 5.01 0.08 -8.89 16 26 N -0.62 -8.50 10.38 -16.47 -0.17 -8.67 16 27 C 0.50 6.07 7.93 -15.90 -0.13 5.94 16 28 O -0.41 -4.49 11.78 -37.91 -0.45 -4.94 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.91 5.32 -51.93 -0.28 0.64 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.11 4.71 -51.93 -0.24 0.87 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 7.63 5.20 -40.82 -0.21 7.42 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.40 4.09 6.71 -40.82 -0.27 3.81 16 43 H 0.19 1.01 6.48 -52.49 -0.34 0.67 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.40 8.02 -51.93 -0.42 -0.02 16 46 H 0.10 0.79 7.35 -51.93 -0.38 0.41 16 47 H 0.41 2.65 8.98 45.56 0.41 3.06 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -36.47 377.64 -6.97 -43.44 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.86 Total: 9.61 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -1.22 Total: 13.09 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.33 Total: -66.35 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.53 Total: -21.80 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.47 -6.97 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271310841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.024 kcal (2) G-P(sol) polarization free energy of solvation -36.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds