Wall clock time and date at job start Tue Mar 31 2020 21:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00078 * 2 1 3 5 5 C 1.53008 * 109.46753 * 174.99899 * 4 2 1 6 6 H 1.08996 * 109.46976 * 54.99865 * 5 4 2 7 7 C 1.53003 * 109.46955 * 175.00214 * 5 4 2 8 8 N 1.46497 * 109.47248 * 174.99983 * 7 5 4 9 9 C 1.36938 * 120.00291 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99336 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99929 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99795 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00046 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47007 * 90.00317 * 13 11 9 15 15 H 1.48503 * 109.46989 * 210.00342 * 13 11 9 16 16 H 1.48491 * 109.47281 * 329.99973 * 13 11 9 17 17 N 1.46499 * 109.47250 * 294.99725 * 5 4 2 18 18 C 1.34779 * 119.99952 * 85.00042 * 17 5 4 19 19 O 1.21626 * 119.99860 * 5.40371 * 18 17 5 20 20 C 1.47299 * 120.00333 * 185.40493 * 18 17 5 21 21 C 1.38321 * 120.73669 * 354.96496 * 20 18 17 22 22 N 1.34953 * 119.02275 * 180.02562 * 21 20 18 23 23 C 1.46500 * 119.70582 * 179.97438 * 22 21 20 24 24 C 1.34454 * 120.58831 * 0.25337 * 22 21 20 25 25 O 1.21902 * 119.19776 * 179.72158 * 24 22 21 26 26 N 1.33326 * 121.59866 * 359.47794 * 24 22 21 27 27 C 1.32222 * 120.92966 * 0.52200 * 26 24 22 28 28 O 1.35008 * 120.33232 * 179.72343 * 27 26 24 29 29 H 1.08994 * 109.46563 * 299.99975 * 1 2 3 30 30 H 1.08994 * 109.46772 * 60.00225 * 1 2 3 31 31 H 1.08995 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47018 * 240.00224 * 2 1 3 33 33 H 1.09001 * 109.47450 * 299.99801 * 3 2 1 34 34 H 1.09002 * 109.47374 * 59.99887 * 3 2 1 35 35 H 1.09002 * 109.47368 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47193 * 55.00585 * 4 2 1 37 37 H 1.08990 * 109.47389 * 294.99802 * 4 2 1 38 38 H 1.09007 * 109.46820 * 295.00196 * 7 5 4 39 39 H 1.09003 * 109.47390 * 54.99610 * 7 5 4 40 40 H 0.97006 * 119.99331 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00087 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00617 * 265.00874 * 17 5 4 43 43 H 1.08002 * 120.48846 * 0.04547 * 21 20 18 44 44 H 1.09003 * 109.47102 * 89.99865 * 23 22 21 45 45 H 1.09004 * 109.46793 * 330.00077 * 23 22 21 46 46 H 1.08998 * 109.47488 * 209.99861 * 23 22 21 47 47 H 0.96698 * 114.00038 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.8311 1.1879 6 1 3.9955 0.1611 1.0526 7 6 4.0853 -1.4395 2.4917 8 7 5.5305 -1.6552 2.3874 9 6 6.2203 -2.1939 3.4406 10 1 5.6986 -2.4602 4.3479 11 6 7.5898 -2.3978 3.3418 12 7 8.2526 -2.9161 4.3539 13 14 8.4917 -1.9378 1.7720 14 1 8.9586 -0.5311 1.8634 15 1 9.6601 -2.8364 1.5910 16 1 7.5736 -2.0803 0.6137 17 7 3.9481 -1.6872 0.0625 18 6 4.0652 -1.1631 -1.1736 19 8 3.9497 0.0363 -1.3390 20 6 4.3332 -2.0428 -2.3243 21 6 4.5699 -3.3933 -2.1417 22 7 4.8121 -4.1673 -3.2204 23 6 5.0653 -5.5994 -3.0442 24 6 4.8287 -3.6346 -4.4548 25 8 5.0552 -4.3563 -5.4108 26 7 4.5987 -2.3373 -4.6591 27 6 4.3547 -1.5227 -3.6466 28 8 4.1289 -0.2100 -3.8667 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6055 -1.7199 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 3.8781 -0.7594 3.3181 39 1 3.5878 -2.3925 2.6720 40 1 5.9989 -1.4163 1.5721 41 1 9.2096 -3.0589 4.2848 42 1 4.1173 -2.6314 0.2070 43 1 4.5607 -3.8221 -1.1505 44 1 4.1219 -6.1436 -3.0908 45 1 5.5349 -5.7688 -2.0752 46 1 5.7272 -5.9515 -3.8353 47 1 4.1651 0.0444 -4.7990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271310841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:36 Heat of formation + Delta-G solvation = -82.891347 kcal Electronic energy + Delta-G solvation = -30940.613591 eV Core-core repulsion = 26737.828029 eV Total energy + Delta-G solvation = -4202.785562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.09567 -41.09223 -39.78782 -38.18455 -37.83213 -36.49352 -35.79436 -35.05341 -33.51382 -32.53864 -30.54590 -28.64205 -27.88867 -27.25533 -26.21130 -25.14234 -24.15581 -22.69719 -21.66533 -20.96321 -20.76609 -19.87258 -19.36458 -18.86844 -17.88296 -17.37528 -17.17928 -16.86455 -16.53899 -16.26411 -15.84935 -15.75227 -15.53453 -15.07454 -14.87865 -14.76657 -14.64943 -14.54009 -14.43033 -14.28908 -13.77954 -13.54666 -13.40274 -13.09266 -12.96054 -12.89801 -12.63872 -12.46833 -12.36702 -12.26375 -12.00256 -11.80051 -11.60504 -11.33435 -11.30870 -11.29217 -11.21349 -10.99237 -10.74167 -10.01070 -9.77482 -9.25575 -7.98853 -5.31230 -0.59071 0.02114 1.18322 1.34918 1.42841 1.47744 1.94527 2.02531 2.17629 2.49332 2.58333 2.94853 3.28084 3.34380 3.50030 3.63125 3.95037 4.00185 4.07115 4.15946 4.18994 4.20739 4.37842 4.41023 4.49284 4.70621 4.73792 4.82756 4.87720 4.95289 4.96972 4.99620 5.05435 5.08819 5.16191 5.23463 5.30765 5.45652 5.62776 5.65511 5.71919 5.82846 6.11522 6.24784 6.44935 6.61792 6.85431 7.12470 7.31956 7.88396 8.06130 9.22513 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007770 B = 0.005093 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.851002 B = 5496.245803 C = 7901.582528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.115 4.115 5 C 0.146 3.854 6 H 0.076 0.924 7 C 0.147 3.853 8 N -0.755 5.755 9 C -0.223 4.223 10 H 0.064 0.936 11 C -0.056 4.056 12 N -0.982 5.982 13 Si 0.942 3.058 14 H -0.295 1.295 15 H -0.299 1.299 16 H -0.244 1.244 17 N -0.710 5.710 18 C 0.579 3.421 19 O -0.534 6.534 20 C -0.316 4.316 21 C 0.270 3.730 22 N -0.510 5.510 23 C 0.047 3.953 24 C 0.647 3.353 25 O -0.570 6.570 26 N -0.643 5.643 27 C 0.495 3.505 28 O -0.417 6.417 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.365 0.635 41 H 0.256 0.744 42 H 0.407 0.593 43 H 0.232 0.768 44 H 0.106 0.894 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -0.926 -12.792 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.194 4.194 4 C -0.153 4.153 5 C 0.041 3.959 6 H 0.094 0.906 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.354 4.354 10 H 0.082 0.918 11 C -0.248 4.248 12 N -0.633 5.633 13 Si 0.770 3.230 14 H -0.222 1.222 15 H -0.226 1.226 16 H -0.168 1.168 17 N -0.363 5.363 18 C 0.365 3.635 19 O -0.411 6.411 20 C -0.328 4.328 21 C 0.128 3.872 22 N -0.221 5.221 23 C -0.094 4.094 24 C 0.349 3.651 25 O -0.448 6.448 26 N -0.403 5.403 27 C 0.295 3.705 28 O -0.211 6.211 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.198 0.802 41 H 0.065 0.935 42 H 0.244 0.756 43 H 0.248 0.752 44 H 0.124 0.876 45 H 0.148 0.852 46 H 0.106 0.894 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -15.268 -0.428 -13.629 20.471 hybrid contribution 1.318 -0.155 -0.553 1.438 sum -13.950 -0.583 -14.183 19.902 Atomic orbital electron populations 1.21809 0.94761 1.01772 1.01581 1.21041 0.95525 0.96248 0.97896 1.21791 1.01626 0.95947 1.00017 1.21963 0.92735 1.01956 0.98690 1.21233 0.95717 0.94571 0.84356 0.90625 1.21124 0.82936 0.98941 0.94882 1.42686 1.04980 1.77014 1.15415 1.19026 0.90705 1.31309 0.94399 0.91827 1.25333 0.97327 1.02100 1.00056 1.69859 1.08042 1.52496 1.32917 0.85624 0.78719 0.76927 0.81685 1.22239 1.22566 1.16818 1.45781 1.70423 1.13467 1.06660 1.17299 0.76684 0.87276 0.82223 1.90844 1.50626 1.14885 1.84793 1.19740 1.25588 0.94346 0.93118 1.23518 0.80388 0.88766 0.94574 1.46247 1.54965 1.13724 1.07145 1.22732 1.05496 0.74533 1.06594 1.17551 0.79477 0.85588 0.82495 1.90955 1.54198 1.59534 1.40109 1.69610 1.34730 1.03994 1.32003 1.20304 0.77280 0.84603 0.88282 1.85263 1.82024 1.17566 1.36211 0.92299 0.93368 0.92271 0.92284 0.94298 0.93289 0.92613 0.89956 0.90076 0.94226 0.93142 0.80207 0.93528 0.75570 0.75181 0.87586 0.85196 0.89416 0.71466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.09 -1.82 2.38 -10.79 -0.03 -1.84 16 3 C -0.14 -3.22 8.12 71.98 0.58 -2.63 16 4 C -0.11 -2.18 4.36 30.60 0.13 -2.04 16 5 C 0.15 3.49 2.33 45.00 0.10 3.59 16 6 H 0.08 2.18 5.86 -2.39 -0.01 2.17 16 7 C 0.15 4.35 5.82 86.38 0.50 4.86 16 8 N -0.75 -29.80 5.24 -343.45 -1.80 -31.59 16 9 C -0.22 -11.36 10.47 84.03 0.88 -10.48 16 10 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 11 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 12 N -0.98 -59.41 13.97 21.65 0.30 -59.11 16 13 Si 0.94 42.51 27.74 68.60 1.90 44.41 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 15 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.24 -9.40 6.52 99.48 0.65 -8.75 16 17 N -0.71 -14.82 4.42 -445.90 -1.97 -16.79 16 18 C 0.58 13.73 6.10 86.63 0.53 14.26 16 19 O -0.53 -15.77 10.69 16.13 0.17 -15.60 16 20 C -0.32 -6.48 5.90 -19.92 -0.12 -6.60 16 21 C 0.27 3.77 9.90 84.23 0.83 4.60 16 22 N -0.51 -8.83 2.96 -679.94 -2.01 -10.84 16 23 C 0.05 0.46 10.35 127.77 1.32 1.79 16 24 C 0.65 17.64 8.32 179.61 1.49 19.13 16 25 O -0.57 -19.43 16.66 -5.00 -0.08 -19.51 16 26 N -0.64 -17.38 10.38 -438.19 -4.55 -21.93 16 27 C 0.50 11.60 7.93 85.59 0.68 12.28 16 28 O -0.42 -8.91 11.78 -62.55 -0.74 -9.64 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.39 5.32 -2.39 -0.01 1.37 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.57 4.71 -2.39 -0.01 1.56 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.36 14.18 5.20 -92.70 -0.48 13.70 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.41 6.53 6.71 -92.71 -0.62 5.91 16 43 H 0.23 1.14 6.48 -2.91 -0.02 1.12 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.13 0.44 8.02 -2.38 -0.02 0.42 16 46 H 0.09 1.21 7.35 -2.39 -0.02 1.20 16 47 H 0.43 5.41 8.98 -74.06 -0.67 4.74 16 Total: -1.00 -81.18 377.64 -1.51 -82.70 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.79 Total: 25.34 kcal Atomic # 6 Polarization: 24.51 SS G_CDS: 8.05 Total: 32.56 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -10.03 Total: -140.26 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.65 Total: -44.75 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.41 kcal Total: -81.18 -1.51 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271310841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.195 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds