Wall clock time and date at job start Tue Mar 31 2020 20:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47409 * 2 1 4 4 N 1.29941 * 126.29337 * 89.96983 * 3 2 1 5 5 O 1.21306 * 110.25677 * 180.02562 * 4 3 2 6 6 C 1.33634 * 109.80802 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.54998 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46827 * 270.02112 * 7 6 5 9 9 C 1.42894 * 113.99640 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47128 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99505 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00027 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99775 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46770 * 179.97438 * 13 12 10 15 15 H 1.08994 * 112.91027 * 316.24922 * 14 13 12 16 16 C 1.53777 * 113.61195 * 87.50624 * 14 13 12 17 17 C 1.53785 * 87.08241 * 139.97738 * 16 14 13 18 18 H 1.09002 * 113.61570 * 220.01842 * 17 16 14 19 19 N 1.46500 * 113.68813 * 89.12417 * 17 16 14 20 20 C 1.36936 * 119.99618 * 105.94148 * 19 17 16 21 21 H 1.07990 * 120.00427 * 359.97438 * 20 19 17 22 22 C 1.38824 * 119.99622 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47190 * 60.00068 * 24 22 20 26 26 H 1.48504 * 109.46839 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47270 * 299.99942 * 24 22 20 28 28 C 1.53781 * 87.08241 * 334.56547 * 17 16 14 29 29 N 1.31129 * 106.90044 * 0.22651 * 6 5 4 30 30 H 1.09005 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47357 * 300.00495 * 1 2 3 32 32 H 1.08995 * 109.47112 * 60.00433 * 1 2 3 33 33 H 1.09002 * 109.47357 * 239.99504 * 2 1 3 34 34 H 1.09011 * 109.46877 * 119.99766 * 2 1 3 35 35 H 1.09005 * 109.46973 * 150.02228 * 7 6 5 36 36 H 1.08993 * 109.47076 * 30.02444 * 7 6 5 37 37 H 1.08998 * 109.47452 * 60.00103 * 9 8 7 38 38 H 1.09002 * 109.47675 * 300.00310 * 9 8 7 39 39 H 0.96999 * 119.99903 * 359.97438 * 12 10 9 40 40 H 1.09005 * 109.46913 * 60.00296 * 13 12 10 41 41 H 1.08994 * 109.47291 * 299.99793 * 13 12 10 42 42 H 1.08999 * 113.61947 * 25.43164 * 16 14 13 43 43 H 1.08997 * 113.61348 * 254.52379 * 16 14 13 44 44 H 0.96998 * 120.00149 * 285.93056 * 19 17 16 45 45 H 0.96996 * 120.00147 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.61578 * 139.97748 * 28 17 16 47 47 H 1.09001 * 113.61682 * 270.80327 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2882 2.1461 1.0473 5 8 2.6766 3.2453 0.7122 6 6 2.7057 3.3283 -0.6212 7 6 3.1271 4.5232 -1.4371 8 8 1.9899 5.3494 -1.6944 9 6 2.2820 6.5167 -2.4650 10 6 1.0178 7.3099 -2.6743 11 8 -0.0302 6.9141 -2.2096 12 7 1.0517 8.4585 -3.3787 13 6 -0.1774 9.2292 -3.5826 14 6 0.1354 10.4791 -4.4076 15 1 1.0451 10.9846 -4.0837 16 6 0.0665 10.2478 -5.9263 17 6 -0.6016 11.6293 -6.0271 18 1 -1.4194 11.6673 -6.7468 19 7 0.3489 12.7325 -6.1872 20 6 0.4851 13.3479 -7.4029 21 1 -0.1078 13.0197 -8.2437 22 6 1.3854 14.3936 -7.5545 23 7 2.1077 14.7939 -6.5296 24 14 1.5717 15.2326 -9.2130 25 1 0.2694 15.8185 -9.6204 26 1 2.5885 16.3102 -9.1111 27 1 2.0049 14.2367 -10.2257 28 6 -1.0671 11.4229 -4.5761 29 7 2.2922 2.1732 -1.0841 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.5526 4.1859 -2.3824 36 1 3.8740 5.0944 -0.8859 37 1 2.6901 6.2213 -3.4316 38 1 3.0112 7.1292 -1.9347 39 1 1.8898 8.7747 -3.7507 40 1 -0.5853 9.5250 -2.6160 41 1 -0.9067 8.6167 -4.1126 42 1 -0.5876 9.4245 -6.2135 43 1 1.0443 10.1997 -6.4055 44 1 0.8817 13.0271 -5.4321 45 1 2.7365 15.5249 -6.6354 46 1 -1.0043 12.3234 -3.9651 47 1 -2.0317 10.9220 -4.4940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316639842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:08 Heat of formation + Delta-G solvation = -7.814049 kcal Electronic energy + Delta-G solvation = -27551.522282 eV Core-core repulsion = 23351.992316 eV Total energy + Delta-G solvation = -4199.529966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.75374 -40.97724 -39.95561 -38.78778 -37.47305 -35.98568 -34.94796 -34.93484 -32.75455 -32.12715 -30.45260 -28.76594 -27.17023 -26.41464 -26.16862 -25.54008 -24.28545 -23.07382 -22.24334 -21.69303 -19.85382 -19.38901 -19.30199 -18.82466 -18.14568 -17.89579 -17.39994 -16.75378 -16.66952 -16.42791 -16.14498 -15.80082 -15.64920 -15.48284 -15.10114 -14.72111 -14.61393 -14.57508 -14.08836 -13.85322 -13.71092 -13.27674 -13.22007 -13.08007 -12.89414 -12.87586 -12.70178 -12.58596 -12.53715 -12.36078 -12.18120 -12.05076 -12.03815 -11.53459 -11.45175 -11.19238 -11.00221 -10.90681 -10.86183 -10.69064 -10.06446 -8.97309 -7.93382 -5.21227 -0.12733 0.97991 1.50188 1.52110 1.54860 1.58226 1.59879 1.98345 2.50162 2.57795 2.90547 3.15270 3.39393 3.66288 3.74723 3.81385 3.82207 3.94277 4.08706 4.13772 4.18292 4.18696 4.25832 4.28143 4.34287 4.37954 4.40027 4.43736 4.69344 4.75056 4.79692 4.82701 4.87936 4.95604 4.96953 5.02384 5.13997 5.19253 5.30672 5.37745 5.50177 5.57001 5.68972 5.79065 6.30308 6.57288 6.99805 7.24677 7.35768 8.13011 8.35590 9.29525 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027390 B = 0.001439 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.037360 B =19448.974386 C =19797.173563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C 0.165 3.835 4 N -0.402 5.402 5 O 0.077 5.923 6 C 0.186 3.814 7 C 0.154 3.846 8 O -0.396 6.396 9 C 0.049 3.951 10 C 0.505 3.495 11 O -0.582 6.582 12 N -0.712 5.712 13 C 0.141 3.859 14 C -0.099 4.099 15 H 0.087 0.913 16 C -0.152 4.152 17 C 0.142 3.858 18 H 0.056 0.944 19 N -0.719 5.719 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.072 4.072 23 N -0.968 5.968 24 Si 0.971 3.029 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.278 1.278 28 C -0.137 4.137 29 N -0.485 5.485 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.417 0.583 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.057 0.943 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -27.064 11.865 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.108 4.108 4 N -0.111 5.111 5 O 0.020 5.980 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.314 6.314 9 C -0.029 4.029 10 C 0.292 3.708 11 O -0.462 6.462 12 N -0.365 5.365 13 C 0.017 3.983 14 C -0.117 4.117 15 H 0.105 0.895 16 C -0.192 4.192 17 C 0.032 3.968 18 H 0.074 0.926 19 N -0.357 5.357 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.207 1.207 26 H -0.223 1.223 27 H -0.204 1.204 28 C -0.176 4.176 29 N -0.220 5.220 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.254 0.746 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.043 -27.881 12.571 30.735 hybrid contribution 0.804 1.334 -0.729 1.720 sum 3.847 -26.546 11.842 29.321 Atomic orbital electron populations 1.21731 0.92899 1.04150 1.01552 1.20180 0.97050 0.83795 1.06208 1.26601 0.99600 1.01658 0.82939 1.74633 1.18375 0.93334 1.24762 1.85270 1.60467 1.27047 1.25238 1.28936 0.95637 0.96976 0.81996 1.21046 0.87984 0.84552 0.98751 1.87980 1.32997 1.36081 1.74378 1.22455 0.94362 0.86746 0.99339 1.20936 0.90961 0.81303 0.77591 1.90728 1.34476 1.70112 1.50876 1.45831 1.12956 1.23106 1.54615 1.21274 0.86554 0.91145 0.99322 1.22480 0.99329 0.94840 0.95097 0.89482 1.23694 1.01237 0.99130 0.95184 1.21392 0.91832 0.87807 0.95797 0.92568 1.42264 1.46122 1.37370 1.09942 1.19626 1.17284 1.10966 0.89729 0.90701 1.25501 0.99726 1.00447 1.00754 1.69790 1.29349 1.31361 1.31298 0.85257 0.77112 0.77846 0.79809 1.20653 1.22261 1.20389 1.23348 0.98344 0.98821 0.97092 1.71911 1.17016 1.03036 1.30072 0.88364 0.93484 0.93297 0.86989 0.87471 0.85286 0.84957 0.85874 0.85492 0.74559 0.92132 0.91748 0.89252 0.92919 0.79269 0.94029 0.92376 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.03 -0.42 6.56 29.84 0.20 -0.22 16 3 C 0.16 3.32 7.47 138.46 1.03 4.35 16 4 N -0.40 -9.12 12.16 -60.31 -0.73 -9.86 16 5 O 0.08 1.63 11.31 74.91 0.85 2.47 16 6 C 0.19 3.36 8.14 88.38 0.72 4.08 16 7 C 0.15 1.48 6.56 71.24 0.47 1.95 16 8 O -0.40 -7.08 9.86 -129.94 -1.28 -8.36 16 9 C 0.05 0.57 6.42 71.24 0.46 1.03 16 10 C 0.51 11.09 7.91 87.66 0.69 11.78 16 11 O -0.58 -19.50 16.50 16.01 0.26 -19.24 16 12 N -0.71 -13.54 5.56 -463.06 -2.57 -16.12 16 13 C 0.14 3.27 5.51 86.38 0.48 3.74 16 14 C -0.10 -2.58 3.64 -10.26 -0.04 -2.61 16 15 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.15 -4.49 7.43 31.12 0.23 -4.26 16 17 C 0.14 5.19 4.55 45.52 0.21 5.40 16 18 H 0.06 2.10 8.11 -2.39 -0.02 2.08 16 19 N -0.72 -34.32 5.31 -320.44 -1.70 -36.02 16 20 C -0.24 -13.09 9.97 84.04 0.84 -12.25 16 21 H 0.08 3.87 7.83 -2.92 -0.02 3.84 16 22 C -0.07 -3.98 5.50 84.87 0.47 -3.52 16 23 N -0.97 -57.09 13.06 21.66 0.28 -56.81 16 24 Si 0.97 44.71 29.55 68.60 2.03 46.73 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 28 C -0.14 -4.00 7.38 31.12 0.23 -3.77 16 29 N -0.48 -10.29 11.55 -303.18 -3.50 -13.79 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.42 5.69 8.47 -92.71 -0.79 4.91 16 40 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.06 1.58 7.84 -2.39 -0.02 1.56 16 42 H 0.09 2.29 7.90 -2.39 -0.02 2.27 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.37 19.11 7.90 -92.71 -0.73 18.38 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -80.15 403.43 -0.20 -80.35 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.52 Total: 25.98 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.69 Total: 4.66 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -8.23 Total: -132.59 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.17 Total: -25.13 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -80.15 -0.20 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316639842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.536 kcal (2) G-P(sol) polarization free energy of solvation -80.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds