Wall clock time and date at job start Tue Mar 31 2020 20:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47281 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46746 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99897 * 66.05099 * 12 11 10 14 14 C 1.46905 * 110.99850 * 190.00132 * 12 11 10 15 15 C 1.50691 * 109.47262 * 170.00487 * 14 12 11 16 16 O 1.21292 * 120.00057 * 359.97438 * 15 14 12 17 17 N 1.34778 * 120.00299 * 180.02562 * 15 14 12 18 18 C 1.37098 * 119.99989 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00182 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99551 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99474 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47154 * 60.00386 * 22 20 18 24 24 H 1.48501 * 109.46759 * 179.97438 * 22 20 18 25 25 H 1.48488 * 109.47314 * 299.99756 * 22 20 18 26 26 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 27 27 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 28 28 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 29 29 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 30 30 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 32 32 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 33 33 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 34 34 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 35 35 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 37 37 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 38 38 H 1.08994 * 109.47333 * 300.00065 * 11 10 9 39 39 H 1.09000 * 109.46769 * 59.99870 * 11 10 9 40 40 H 1.09001 * 109.46970 * 59.99555 * 13 12 11 41 41 H 1.08998 * 109.47431 * 179.97438 * 13 12 11 42 42 H 1.08998 * 109.47245 * 299.99818 * 13 12 11 43 43 H 1.09006 * 109.47105 * 290.00376 * 14 12 11 44 44 H 1.08994 * 109.46924 * 50.00052 * 14 12 11 45 45 H 0.97000 * 119.99571 * 359.97438 * 17 15 14 46 46 H 0.97000 * 119.99824 * 180.02562 * 21 20 18 47 47 H 1.07993 * 126.52411 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3536 1.4373 -5.2165 12 7 8.5326 1.4388 -6.0928 13 6 9.2924 0.1891 -5.9552 14 6 8.1484 1.6699 -7.4918 15 6 9.3849 1.9090 -8.3193 16 8 10.4786 1.8893 -7.7953 17 7 9.2754 2.1458 -9.6416 18 6 10.4004 2.3638 -10.3944 19 1 11.3741 2.3463 -9.9278 20 6 10.2874 2.6084 -11.7576 21 7 9.1024 2.6303 -12.3252 22 14 11.8201 2.9062 -12.7831 23 1 12.7071 1.7178 -12.7041 24 1 11.4316 3.1403 -14.1971 25 1 12.5398 4.0966 -12.2634 26 6 5.6057 1.4526 0.6986 27 8 4.3227 1.4484 1.0939 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 5.7387 1.4389 -3.2654 36 1 8.4000 2.3376 -3.5622 37 1 8.4061 0.5577 -3.5557 38 1 6.7588 0.5444 -5.4085 39 1 6.7522 2.3243 -5.4156 40 1 8.6568 -0.6541 -6.2256 41 1 10.1595 0.2164 -6.6151 42 1 9.6243 0.0775 -4.9230 43 1 7.6198 0.7960 -7.8725 44 1 7.4977 2.5423 -7.5504 45 1 8.4008 2.1619 -10.0606 46 1 9.0237 2.8007 -13.2769 47 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317467181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:58 Heat of formation + Delta-G solvation = -51.646387 kcal Electronic energy + Delta-G solvation = -27738.267028 eV Core-core repulsion = 23536.836349 eV Total energy + Delta-G solvation = -4201.430679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.86725 -39.74751 -38.62096 -36.79313 -36.01958 -35.13241 -34.62164 -33.78210 -31.25516 -31.19583 -29.57581 -27.76051 -27.59679 -25.61699 -24.56397 -23.34877 -22.79022 -21.57300 -21.20786 -20.62209 -19.15065 -18.48982 -17.83582 -17.22745 -16.87403 -16.35817 -16.00460 -15.78046 -15.65831 -15.35742 -14.97832 -14.65505 -14.58883 -14.26617 -14.00769 -13.88853 -13.77824 -13.43972 -13.26019 -13.00516 -12.78631 -12.40085 -12.11272 -12.00162 -11.86421 -11.62821 -11.50490 -11.38070 -11.34635 -11.26210 -11.25730 -11.03632 -10.91027 -10.47067 -10.42654 -10.19870 -9.48968 -9.45399 -9.17549 -8.46435 -7.97438 -7.87454 -6.40302 -3.81011 0.71538 1.58477 2.11640 2.77970 3.02781 3.21552 3.27071 3.31596 3.38042 3.91697 4.04890 4.25466 4.26856 4.33633 4.38204 4.50793 4.67596 4.85044 4.90197 5.00000 5.02058 5.12712 5.13955 5.16185 5.22752 5.26182 5.42174 5.44272 5.53128 5.64076 5.65386 5.68383 5.70959 5.84774 5.89800 5.94966 6.02117 6.20180 6.29222 6.57145 6.97671 7.21162 7.31243 7.35218 7.56589 7.92229 8.07659 8.63403 9.19594 9.55774 10.07831 10.77378 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.001578 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.947342 B =17743.762528 C =18741.483001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.025 4.025 4 C 0.200 3.800 5 N -0.459 5.459 6 C -0.071 4.071 7 C 0.601 3.399 8 O -0.534 6.534 9 N -0.709 5.709 10 C 0.121 3.879 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.018 3.982 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.013 3.987 27 O -0.196 6.196 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.562 -4.576 25.074 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.063 4.063 4 C -0.009 4.009 5 N -0.189 5.189 6 C -0.191 4.191 7 C 0.386 3.614 8 O -0.411 6.411 9 N -0.361 5.361 10 C -0.002 4.002 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.061 4.061 27 O -0.082 6.082 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.243 0.757 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -17.973 -4.161 25.059 31.117 hybrid contribution -0.473 -0.457 -0.649 0.924 sum -18.446 -4.618 24.410 30.942 Atomic orbital electron populations 1.21757 0.94404 1.02466 1.02311 1.21554 0.96720 0.94498 1.03325 1.20267 0.80580 0.99796 1.05631 1.26345 0.96401 0.99934 0.78265 1.70757 1.00623 1.17588 1.29977 1.21806 0.92104 1.12046 0.93103 1.16676 0.86140 0.76717 0.81837 1.90856 1.24260 1.50658 1.75336 1.45720 1.11032 1.73894 1.05410 1.21417 0.86915 1.03742 0.88154 1.22244 0.92878 1.01379 0.91960 1.61446 1.20217 1.36551 1.05676 1.22634 0.99552 0.87878 1.02953 1.21868 0.97277 1.01253 0.88025 1.19703 0.89964 0.84545 0.82887 1.90491 1.27983 1.56188 1.71380 1.41852 1.09882 1.62253 1.06087 1.19659 0.88187 1.45249 0.89798 0.87937 1.25255 0.98134 0.97391 0.97127 1.69603 1.22618 1.49660 1.12497 0.85915 0.80988 0.79118 0.78180 1.19936 1.21011 1.19885 1.25318 0.84818 1.00233 0.95724 1.84400 1.16706 1.69141 1.37925 0.92346 0.92123 0.92052 0.90863 0.91396 0.88592 0.87241 0.75665 0.89890 0.90858 0.94428 0.90152 0.96604 0.88347 0.91836 0.93319 0.89285 0.77498 0.91850 0.75210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.16 0.37 -0.06 16 2 C -0.12 -0.48 5.92 -26.73 -0.16 -0.64 16 3 C -0.02 -0.10 5.84 -27.88 -0.16 -0.27 16 4 C 0.20 1.56 7.56 -13.08 -0.10 1.46 16 5 N -0.46 -4.55 11.06 -7.65 -0.08 -4.63 16 6 C -0.07 -0.76 6.99 -83.02 -0.58 -1.34 16 7 C 0.60 7.64 7.81 -12.52 -0.10 7.54 16 8 O -0.53 -8.29 16.89 5.26 0.09 -8.20 16 9 N -0.71 -8.06 5.55 -61.38 -0.34 -8.40 16 10 C 0.12 1.53 5.60 -4.04 -0.02 1.51 16 11 C 0.04 0.56 5.07 -3.82 -0.02 0.54 16 12 N -0.51 -8.58 4.50 -244.38 -1.10 -9.68 16 13 C 0.02 0.29 8.96 60.06 0.54 0.83 16 14 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 15 C 0.44 10.47 7.47 -10.99 -0.08 10.39 16 16 O -0.58 -15.56 13.91 5.55 0.08 -15.48 16 17 N -0.56 -14.29 5.29 -10.97 -0.06 -14.34 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.01 0.11 11.95 29.96 0.36 0.47 16 27 O -0.20 -1.58 10.73 6.52 0.07 -1.51 16 28 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.41 3.96 8.20 -40.82 -0.33 3.62 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 38 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 42 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -34.20 399.42 -6.89 -41.10 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.04 Total: 9.60 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -0.23 Total: 13.24 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.86 Total: -60.87 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.24 Total: -25.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.20 -6.89 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317467181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.551 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds