Wall clock time and date at job start Tue Mar 31 2020 20:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47281 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46746 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99897 * 66.05099 * 12 11 10 14 14 C 1.46905 * 110.99850 * 190.00132 * 12 11 10 15 15 C 1.50691 * 109.47262 * 170.00487 * 14 12 11 16 16 O 1.21292 * 120.00057 * 359.97438 * 15 14 12 17 17 N 1.34778 * 120.00299 * 180.02562 * 15 14 12 18 18 C 1.37098 * 119.99989 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00182 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99551 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99474 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47154 * 60.00386 * 22 20 18 24 24 H 1.48501 * 109.46759 * 179.97438 * 22 20 18 25 25 H 1.48488 * 109.47314 * 299.99756 * 22 20 18 26 26 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 27 27 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 28 28 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 29 29 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 30 30 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 32 32 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 33 33 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 34 34 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 35 35 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 37 37 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 38 38 H 1.08994 * 109.47333 * 300.00065 * 11 10 9 39 39 H 1.09000 * 109.46769 * 59.99870 * 11 10 9 40 40 H 1.09001 * 109.46970 * 59.99555 * 13 12 11 41 41 H 1.08998 * 109.47431 * 179.97438 * 13 12 11 42 42 H 1.08998 * 109.47245 * 299.99818 * 13 12 11 43 43 H 1.09006 * 109.47105 * 290.00376 * 14 12 11 44 44 H 1.08994 * 109.46924 * 50.00052 * 14 12 11 45 45 H 0.97000 * 119.99571 * 359.97438 * 17 15 14 46 46 H 0.97000 * 119.99824 * 180.02562 * 21 20 18 47 47 H 1.07993 * 126.52411 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3536 1.4373 -5.2165 12 7 8.5326 1.4388 -6.0928 13 6 9.2924 0.1891 -5.9552 14 6 8.1484 1.6699 -7.4918 15 6 9.3849 1.9090 -8.3193 16 8 10.4786 1.8893 -7.7953 17 7 9.2754 2.1458 -9.6416 18 6 10.4004 2.3638 -10.3944 19 1 11.3741 2.3463 -9.9278 20 6 10.2874 2.6084 -11.7576 21 7 9.1024 2.6303 -12.3252 22 14 11.8201 2.9062 -12.7831 23 1 12.7071 1.7178 -12.7041 24 1 11.4316 3.1403 -14.1971 25 1 12.5398 4.0966 -12.2634 26 6 5.6057 1.4526 0.6986 27 8 4.3227 1.4484 1.0939 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 5.7387 1.4389 -3.2654 36 1 8.4000 2.3376 -3.5622 37 1 8.4061 0.5577 -3.5557 38 1 6.7588 0.5444 -5.4085 39 1 6.7522 2.3243 -5.4156 40 1 8.6568 -0.6541 -6.2256 41 1 10.1595 0.2164 -6.6151 42 1 9.6243 0.0775 -4.9230 43 1 7.6198 0.7960 -7.8725 44 1 7.4977 2.5423 -7.5504 45 1 8.4008 2.1619 -10.0606 46 1 9.0237 2.8007 -13.2769 47 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317467181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:57 Heat of formation + Delta-G solvation = -80.241734 kcal Electronic energy + Delta-G solvation = -27739.507015 eV Core-core repulsion = 23536.836349 eV Total energy + Delta-G solvation = -4202.670666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.51912 -40.77979 -40.30821 -38.20740 -36.44790 -36.04462 -35.76899 -35.44834 -33.26806 -31.81448 -30.71377 -29.12596 -28.10024 -27.09855 -25.97021 -24.45232 -23.23259 -22.38511 -22.11348 -21.44989 -20.96230 -19.84589 -19.29389 -17.90166 -17.81473 -17.47794 -17.38081 -16.90423 -16.56019 -16.31559 -16.11982 -15.96604 -15.73012 -15.52917 -15.23036 -15.07730 -14.82025 -14.42155 -14.35978 -14.17703 -13.77554 -13.44385 -13.03970 -13.02355 -12.97415 -12.75357 -12.60951 -12.55587 -12.45084 -12.41000 -12.18937 -12.10568 -12.07871 -11.96281 -11.62039 -11.47827 -11.44097 -10.33773 -10.28241 -10.00854 -9.98485 -9.25987 -8.45042 -5.93431 0.01016 0.88160 1.40634 1.42398 1.51257 1.53242 1.86697 2.07427 2.14112 2.30628 2.71193 2.92716 3.21909 3.42461 3.63580 3.72582 3.82829 4.02668 4.04113 4.09323 4.24931 4.28180 4.35491 4.43780 4.49693 4.52928 4.57022 4.62437 4.63388 4.72718 4.76794 4.81206 4.89684 4.93163 5.00681 5.19904 5.22062 5.25971 5.28091 5.42468 5.46482 5.84248 6.04385 6.14157 6.21645 6.52231 6.62792 6.99179 7.14881 7.58485 8.14872 8.72060 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.001578 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.947342 B =17743.762528 C =18741.483001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.023 4.023 4 C 0.205 3.795 5 N -0.479 5.479 6 C -0.100 4.100 7 C 0.600 3.400 8 O -0.570 6.570 9 N -0.699 5.699 10 C 0.130 3.870 11 C 0.053 3.947 12 N -0.537 5.537 13 C 0.023 3.977 14 C 0.060 3.940 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.028 3.972 27 O -0.194 6.194 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.797 -4.577 25.770 34.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.061 4.061 4 C -0.005 4.005 5 N -0.209 5.209 6 C -0.219 4.219 7 C 0.386 3.614 8 O -0.450 6.450 9 N -0.351 5.351 10 C 0.006 3.994 11 C -0.075 4.075 12 N -0.262 5.262 13 C -0.125 4.125 14 C -0.071 4.071 15 C 0.227 3.773 16 O -0.501 6.501 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.047 4.047 27 O -0.080 6.080 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -20.264 -4.168 25.741 33.024 hybrid contribution 0.161 -0.474 -0.762 0.911 sum -20.104 -4.642 24.979 32.399 Atomic orbital electron populations 1.21741 0.93366 1.02625 1.02956 1.21508 0.97509 0.94124 1.02574 1.20508 0.78184 1.00255 1.07176 1.27085 0.97515 0.98192 0.77685 1.70721 1.00398 1.18832 1.30966 1.21632 0.91937 1.14629 0.93681 1.16951 0.86325 0.75880 0.82196 1.90829 1.25744 1.52490 1.75951 1.45590 1.11100 1.73321 1.05044 1.21207 0.87154 1.02444 0.88628 1.22222 0.91513 1.03207 0.90564 1.61341 1.22394 1.36918 1.05550 1.22487 0.98563 0.88716 1.02688 1.21741 0.94275 1.03335 0.87771 1.20788 0.91489 0.82385 0.82610 1.90473 1.30326 1.57271 1.72074 1.41913 1.09394 1.63018 1.06809 1.19623 0.88280 1.47539 0.90909 0.90386 1.26004 1.01113 0.96508 0.97534 1.69661 1.23949 1.49449 1.13014 0.85006 0.77542 0.78803 0.77089 1.19779 1.19459 1.19846 1.25766 0.85552 0.98025 0.95319 1.84441 1.16549 1.69008 1.38007 0.91351 0.91831 0.92176 0.92213 0.91600 0.86376 0.86333 0.74515 0.91828 0.91660 0.92229 0.88493 0.94694 0.92356 0.90673 0.90941 0.86795 0.76963 0.91328 0.72999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 71.98 0.71 0.17 16 2 C -0.12 -0.73 5.92 30.59 0.18 -0.55 16 3 C -0.02 -0.14 5.84 29.85 0.17 0.03 16 4 C 0.20 2.85 7.56 88.39 0.67 3.51 16 5 N -0.48 -8.91 11.06 -293.03 -3.24 -12.15 16 6 C -0.10 -2.06 6.99 40.41 0.28 -1.78 16 7 C 0.60 15.07 7.81 86.66 0.68 15.75 16 8 O -0.57 -17.88 16.89 -4.08 -0.07 -17.95 16 9 N -0.70 -15.26 5.55 -466.37 -2.59 -17.85 16 10 C 0.13 3.17 5.60 86.38 0.48 3.66 16 11 C 0.05 1.21 5.07 86.30 0.44 1.65 16 12 N -0.54 -17.26 4.50 -927.07 -4.17 -21.44 16 13 C 0.02 0.76 8.96 127.69 1.14 1.90 16 14 C 0.06 2.03 5.45 85.55 0.47 2.49 16 15 C 0.44 20.98 7.47 87.65 0.66 21.63 16 16 O -0.62 -34.27 13.91 -3.07 -0.04 -34.32 16 17 N -0.57 -29.46 5.29 -306.99 -1.62 -31.09 16 18 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 22 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.03 0.43 11.95 67.32 0.80 1.24 16 27 O -0.19 -2.78 10.73 0.42 0.00 -2.77 16 28 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 29 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.42 7.47 8.20 -92.70 -0.76 6.71 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.71 6.55 -2.39 -0.02 1.70 16 38 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 39 H 0.10 1.93 7.93 -2.39 -0.02 1.91 16 40 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 2.39 5.82 -2.39 -0.01 2.37 16 42 H 0.07 2.21 6.47 -2.39 -0.02 2.20 16 43 H 0.07 2.15 8.12 -2.38 -0.02 2.13 16 44 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 45 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.25 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -75.58 399.42 -1.94 -77.52 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.48 Total: 32.83 kcal Atomic # 6 Polarization: 23.32 SS G_CDS: 7.97 Total: 31.29 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -11.34 Total: -131.85 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.11 Total: -55.03 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -75.58 -1.94 -77.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317467181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.723 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds