Wall clock time and date at job start Tue Mar 31 2020 21:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47537 * 2 1 4 4 N 1.46497 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99584 * 274.88216 * 4 3 2 6 6 O 1.21280 * 119.99678 * 182.57024 * 5 4 3 7 7 C 1.50694 * 120.00238 * 2.57263 * 5 4 3 8 8 H 1.08997 * 109.46462 * 39.97557 * 7 5 4 9 9 C 1.53051 * 109.46073 * 279.99968 * 7 5 4 10 10 C 1.50804 * 109.18308 * 286.68031 * 9 7 5 11 11 O 1.21228 * 120.01690 * 145.78876 * 10 9 7 12 12 N 1.34560 * 119.96529 * 325.76730 * 10 9 7 13 13 C 1.34341 * 120.99317 * 4.43574 * 12 10 9 14 14 O 1.21539 * 119.21359 * 192.04211 * 13 12 10 15 15 N 1.34296 * 121.57514 * 12.01997 * 13 12 10 16 16 C 1.46500 * 120.00182 * 94.88197 * 4 3 2 17 17 H 1.08995 * 110.91417 * 190.52563 * 16 4 3 18 18 C 1.55162 * 111.00309 * 66.62727 * 16 4 3 19 19 C 1.54320 * 103.09965 * 277.51812 * 18 16 4 20 20 N 1.47027 * 107.27246 * 337.71506 * 19 18 16 21 21 C 1.36936 * 125.64767 * 178.97956 * 20 19 18 22 22 H 1.07999 * 119.99714 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00124 * 359.97438 * 21 20 19 24 24 N 1.31611 * 119.99928 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47085 * 59.99755 * 25 23 21 27 27 H 1.48493 * 109.47230 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47090 * 300.00054 * 25 23 21 29 29 C 1.47426 * 108.70165 * 358.94664 * 20 19 18 30 30 H 1.09002 * 109.46502 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47186 * 300.00323 * 1 2 3 33 33 H 1.09001 * 109.46936 * 239.99212 * 2 1 3 34 34 H 1.09008 * 109.46884 * 119.99956 * 2 1 3 35 35 H 1.09001 * 109.47106 * 59.99114 * 3 2 1 36 36 H 1.09005 * 109.46508 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.51893 * 46.59284 * 9 7 5 38 38 H 1.08999 * 109.51621 * 166.77314 * 9 7 5 39 39 H 0.97003 * 119.50306 * 184.41099 * 12 10 9 40 40 H 0.96998 * 119.53162 * 185.71416 * 15 13 12 41 41 H 1.08989 * 110.72060 * 159.06419 * 18 16 4 42 42 H 1.09002 * 110.72089 * 35.96537 * 18 16 4 43 43 H 1.08994 * 109.88779 * 97.13749 * 19 18 16 44 44 H 1.09005 * 109.87959 * 218.14848 * 19 18 16 45 45 H 0.97000 * 119.99948 * 180.02562 * 24 23 21 46 46 H 1.08996 * 110.36475 * 142.96464 * 29 20 19 47 47 H 1.09003 * 110.36410 * 265.18063 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1784 1.3432 1.1640 6 8 5.3903 1.3900 1.1690 7 6 3.4255 1.1740 2.4583 8 1 2.5881 0.4932 2.3052 9 6 2.8986 2.5337 2.9232 10 6 4.0485 3.3592 3.4434 11 8 4.0518 4.5613 3.2865 12 7 5.0705 2.7608 4.0821 13 6 5.1307 1.4231 4.1899 14 8 5.9358 0.9251 4.9521 15 7 4.3222 0.6230 3.4760 16 6 4.2381 1.5501 -1.2632 17 1 5.2995 1.3509 -1.1156 18 6 4.0189 2.9403 -1.9165 19 6 2.6691 2.7750 -2.6460 20 7 2.4675 1.3360 -2.8704 21 6 1.3772 0.7673 -3.4727 22 1 1.3237 -0.3049 -3.5911 23 6 0.3406 1.5688 -3.9311 24 7 0.4060 2.8753 -3.7872 25 14 -1.1471 0.7928 -4.7521 26 1 -1.8069 -0.1388 -3.8023 27 1 -2.1050 1.8563 -5.1476 28 1 -0.7123 0.0439 -5.9585 29 6 3.6340 0.6069 -2.3401 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 2.4305 3.0490 2.0845 38 1 2.1662 2.3883 3.7172 39 1 5.7747 3.3035 4.4702 40 1 4.3323 -0.3335 3.6371 41 1 4.8159 3.1631 -2.6258 42 1 3.9532 3.7180 -1.1555 43 1 1.8629 3.1704 -2.0283 44 1 2.6968 3.3010 -3.6004 45 1 -0.3185 3.4354 -4.1071 46 1 3.3198 -0.3333 -1.8872 47 1 4.3583 0.4218 -3.1335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317767545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:45 Heat of formation + Delta-G solvation = -52.857036 kcal Electronic energy + Delta-G solvation = -32191.031404 eV Core-core repulsion = 27989.548227 eV Total energy + Delta-G solvation = -4201.483177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04937 -40.06464 -38.98988 -37.82013 -35.97766 -35.13845 -34.38721 -33.07196 -31.87319 -31.04188 -29.27358 -27.83362 -26.29568 -25.71441 -24.27011 -23.67180 -21.85380 -21.14125 -20.28565 -20.14945 -18.99317 -18.36295 -17.72015 -17.46196 -17.02862 -16.51017 -16.34065 -15.79025 -15.24789 -14.92604 -14.71334 -14.59577 -14.43669 -14.25211 -13.92118 -13.59321 -13.53518 -13.07191 -12.77483 -12.48313 -12.30103 -12.08818 -11.99375 -11.64408 -11.37097 -11.28525 -11.06829 -11.02046 -10.95614 -10.66752 -10.56404 -10.46802 -10.38489 -10.34529 -10.25903 -10.09567 -9.78522 -9.75249 -9.21202 -8.77209 -8.36604 -6.96573 -5.83793 -3.17831 1.52192 2.21489 2.52467 2.71375 3.03886 3.19204 3.30258 3.36727 3.38164 3.98426 4.10894 4.28896 4.38311 4.66049 4.79650 4.98731 5.20439 5.23345 5.35848 5.36154 5.42948 5.54009 5.60529 5.66332 5.78313 5.81463 6.00011 6.01989 6.06359 6.18638 6.25890 6.32294 6.41963 6.50636 6.50947 6.57714 6.72932 6.75197 6.92420 7.04519 7.27780 7.41652 7.45814 7.59367 7.70931 7.97462 8.10127 8.16084 9.08461 9.68138 10.33659 11.27138 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.003661 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.079945 B = 7645.848638 C = 7870.997110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.081 3.919 4 N -0.576 5.576 5 C 0.489 3.511 6 O -0.535 6.535 7 C 0.117 3.883 8 H 0.137 0.863 9 C -0.154 4.154 10 C 0.527 3.473 11 O -0.495 6.495 12 N -0.670 5.670 13 C 0.726 3.274 14 O -0.560 6.560 15 N -0.705 5.705 16 C 0.122 3.878 17 H 0.098 0.902 18 C -0.157 4.157 19 C 0.174 3.826 20 N -0.600 5.600 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.920 5.920 25 Si 0.905 3.095 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.125 3.875 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.426 0.574 40 H 0.427 0.573 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.254 0.746 46 H 0.048 0.952 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -3.405 12.858 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.041 4.041 4 N -0.306 5.306 5 C 0.274 3.726 6 O -0.412 6.412 7 C 0.007 3.993 8 H 0.154 0.846 9 C -0.194 4.194 10 C 0.314 3.686 11 O -0.366 6.366 12 N -0.340 5.340 13 C 0.427 3.573 14 O -0.435 6.435 15 N -0.363 5.363 16 C 0.018 3.982 17 H 0.116 0.884 18 C -0.196 4.196 19 C 0.050 3.950 20 N -0.327 5.327 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.567 5.567 25 Si 0.736 3.264 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.002 4.002 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.268 0.732 40 H 0.266 0.734 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.160 -2.828 12.950 13.430 hybrid contribution -0.643 -0.549 -0.505 0.985 sum 1.517 -3.377 12.446 12.985 Atomic orbital electron populations 1.21656 0.95032 1.01358 1.02428 1.21937 0.96592 0.96726 1.01689 1.22374 0.77862 0.98289 1.05568 1.47868 1.07555 1.69856 1.05348 1.20831 0.88360 0.77861 0.85580 1.90719 1.13565 1.50268 1.86646 1.21238 0.93633 0.97160 0.87233 0.84571 1.22346 0.97307 0.94180 1.05611 1.20747 0.83302 0.88581 0.75973 1.90807 1.77862 1.14652 1.53300 1.44133 1.26812 1.07613 1.55407 1.15502 0.80607 0.80971 0.80246 1.91025 1.38367 1.73366 1.40692 1.44736 1.42611 1.10985 1.37972 1.22394 0.95936 0.97333 0.82514 0.88436 1.23280 1.01074 0.95703 0.99546 1.21221 0.90508 0.85360 0.97922 1.44520 1.17548 1.01516 1.69144 1.18895 0.93982 0.91412 1.31026 0.90628 1.24718 0.98543 0.95470 1.01127 1.69928 1.32960 1.02370 1.51436 0.86316 0.82664 0.77913 0.79552 1.21087 1.21678 1.21313 1.22009 0.90643 0.94518 0.92988 0.90676 0.93257 0.93739 0.89906 0.94058 0.92299 0.84457 0.84745 0.85355 0.73241 0.73352 0.91353 0.91905 0.93123 0.93751 0.93596 0.93352 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.13 -1.69 5.89 -26.73 -0.16 -1.84 16 3 C 0.08 1.11 4.17 -4.04 -0.02 1.09 16 4 N -0.58 -8.29 2.53 -163.38 -0.41 -8.71 16 5 C 0.49 6.78 6.54 -10.99 -0.07 6.71 16 6 O -0.53 -9.30 15.57 5.56 0.09 -9.21 16 7 C 0.12 1.12 2.82 -69.11 -0.19 0.93 16 8 H 0.14 0.94 5.59 -51.93 -0.29 0.65 16 9 C -0.15 -1.37 5.26 -27.81 -0.15 -1.52 16 10 C 0.53 6.38 7.44 -11.03 -0.08 6.29 16 11 O -0.49 -7.52 17.93 5.60 0.10 -7.42 16 12 N -0.67 -7.86 5.18 -16.02 -0.08 -7.94 16 13 C 0.73 9.10 7.98 -87.74 -0.70 8.40 16 14 O -0.56 -8.64 17.97 5.33 0.10 -8.54 16 15 N -0.70 -7.02 4.91 -60.11 -0.29 -7.31 16 16 C 0.12 2.01 3.65 -65.52 -0.24 1.77 16 17 H 0.10 1.64 7.10 -51.93 -0.37 1.27 16 18 C -0.16 -2.73 6.54 -24.90 -0.16 -2.90 16 19 C 0.17 3.67 4.30 -3.06 -0.01 3.65 16 20 N -0.60 -12.76 2.19 -169.77 -0.37 -13.13 16 21 C -0.23 -5.32 10.28 -15.06 -0.15 -5.48 16 22 H 0.08 1.77 7.83 -52.49 -0.41 1.35 16 23 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 24 N -0.92 -23.90 10.31 55.49 0.57 -23.33 16 25 Si 0.91 19.98 29.55 -169.99 -5.02 14.96 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 29 C 0.13 2.26 6.06 -2.27 -0.01 2.24 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.29 5.60 -51.93 -0.29 1.00 16 34 H 0.04 0.42 6.45 -51.92 -0.33 0.09 16 35 H 0.06 0.64 5.03 -51.93 -0.26 0.38 16 36 H 0.14 2.46 3.74 -51.93 -0.19 2.26 16 37 H 0.13 1.24 6.30 -51.93 -0.33 0.91 16 38 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.43 4.55 8.86 -40.82 -0.36 4.19 16 40 H 0.43 3.43 8.90 -40.82 -0.36 3.07 16 41 H 0.07 1.15 8.14 -51.94 -0.42 0.72 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.15 5.82 -51.93 -0.30 0.85 16 44 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 45 H 0.25 6.58 8.31 -40.82 -0.34 6.25 16 46 H 0.05 0.85 5.98 -51.93 -0.31 0.54 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -31.28 363.80 -7.83 -39.11 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.30 Total: 8.34 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: -1.68 Total: 17.71 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.59 Total: -60.42 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.28 Total: -25.17 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.28 -7.83 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.746 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds