Wall clock time and date at job start Tue Mar 31 2020 21:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47537 * 2 1 4 4 N 1.46497 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99584 * 274.88216 * 4 3 2 6 6 O 1.21280 * 119.99678 * 182.57024 * 5 4 3 7 7 C 1.50694 * 120.00238 * 2.57263 * 5 4 3 8 8 H 1.08997 * 109.46462 * 39.97557 * 7 5 4 9 9 C 1.53051 * 109.46073 * 279.99968 * 7 5 4 10 10 C 1.50804 * 109.18308 * 286.68031 * 9 7 5 11 11 O 1.21228 * 120.01690 * 145.78876 * 10 9 7 12 12 N 1.34560 * 119.96529 * 325.76730 * 10 9 7 13 13 C 1.34341 * 120.99317 * 4.43574 * 12 10 9 14 14 O 1.21539 * 119.21359 * 192.04211 * 13 12 10 15 15 N 1.34296 * 121.57514 * 12.01997 * 13 12 10 16 16 C 1.46500 * 120.00182 * 94.88197 * 4 3 2 17 17 H 1.08995 * 110.91417 * 190.52563 * 16 4 3 18 18 C 1.55162 * 111.00309 * 66.62727 * 16 4 3 19 19 C 1.54320 * 103.09965 * 277.51812 * 18 16 4 20 20 N 1.47027 * 107.27246 * 337.71506 * 19 18 16 21 21 C 1.36936 * 125.64767 * 178.97956 * 20 19 18 22 22 H 1.07999 * 119.99714 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00124 * 359.97438 * 21 20 19 24 24 N 1.31611 * 119.99928 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47085 * 59.99755 * 25 23 21 27 27 H 1.48493 * 109.47230 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47090 * 300.00054 * 25 23 21 29 29 C 1.47426 * 108.70165 * 358.94664 * 20 19 18 30 30 H 1.09002 * 109.46502 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47186 * 300.00323 * 1 2 3 33 33 H 1.09001 * 109.46936 * 239.99212 * 2 1 3 34 34 H 1.09008 * 109.46884 * 119.99956 * 2 1 3 35 35 H 1.09001 * 109.47106 * 59.99114 * 3 2 1 36 36 H 1.09005 * 109.46508 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.51893 * 46.59284 * 9 7 5 38 38 H 1.08999 * 109.51621 * 166.77314 * 9 7 5 39 39 H 0.97003 * 119.50306 * 184.41099 * 12 10 9 40 40 H 0.96998 * 119.53162 * 185.71416 * 15 13 12 41 41 H 1.08989 * 110.72060 * 159.06419 * 18 16 4 42 42 H 1.09002 * 110.72089 * 35.96537 * 18 16 4 43 43 H 1.08994 * 109.88779 * 97.13749 * 19 18 16 44 44 H 1.09005 * 109.87959 * 218.14848 * 19 18 16 45 45 H 0.97000 * 119.99948 * 180.02562 * 24 23 21 46 46 H 1.08996 * 110.36475 * 142.96464 * 29 20 19 47 47 H 1.09003 * 110.36410 * 265.18063 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1784 1.3432 1.1640 6 8 5.3903 1.3900 1.1690 7 6 3.4255 1.1740 2.4583 8 1 2.5881 0.4932 2.3052 9 6 2.8986 2.5337 2.9232 10 6 4.0485 3.3592 3.4434 11 8 4.0518 4.5613 3.2865 12 7 5.0705 2.7608 4.0821 13 6 5.1307 1.4231 4.1899 14 8 5.9358 0.9251 4.9521 15 7 4.3222 0.6230 3.4760 16 6 4.2381 1.5501 -1.2632 17 1 5.2995 1.3509 -1.1156 18 6 4.0189 2.9403 -1.9165 19 6 2.6691 2.7750 -2.6460 20 7 2.4675 1.3360 -2.8704 21 6 1.3772 0.7673 -3.4727 22 1 1.3237 -0.3049 -3.5911 23 6 0.3406 1.5688 -3.9311 24 7 0.4060 2.8753 -3.7872 25 14 -1.1471 0.7928 -4.7521 26 1 -1.8069 -0.1388 -3.8023 27 1 -2.1050 1.8563 -5.1476 28 1 -0.7123 0.0439 -5.9585 29 6 3.6340 0.6069 -2.3401 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 2.4305 3.0490 2.0845 38 1 2.1662 2.3883 3.7172 39 1 5.7747 3.3035 4.4702 40 1 4.3323 -0.3335 3.6371 41 1 4.8159 3.1631 -2.6258 42 1 3.9532 3.7180 -1.1555 43 1 1.8629 3.1704 -2.0283 44 1 2.6968 3.3010 -3.6004 45 1 -0.3185 3.4354 -4.1071 46 1 3.3198 -0.3333 -1.8872 47 1 4.3583 0.4218 -3.1335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317767545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:44 Heat of formation + Delta-G solvation = -75.989238 kcal Electronic energy + Delta-G solvation = -32192.034491 eV Core-core repulsion = 27989.548227 eV Total energy + Delta-G solvation = -4202.486264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.99480 -41.25744 -39.99747 -39.18615 -36.99814 -36.42587 -35.36734 -34.53150 -33.20462 -32.02115 -30.87636 -29.30608 -27.28980 -27.00698 -25.81661 -24.61485 -22.95222 -22.27088 -21.88573 -21.21509 -20.16232 -19.29320 -18.83012 -18.74213 -18.43342 -17.59380 -17.31523 -16.89179 -16.58041 -16.27715 -15.90318 -15.77562 -15.57792 -15.51347 -15.30585 -14.79626 -14.54533 -14.22148 -13.96691 -13.73953 -13.57605 -13.44267 -13.31175 -12.84630 -12.82213 -12.74094 -12.53719 -12.44709 -12.04765 -12.03747 -11.95505 -11.75891 -11.71842 -11.56725 -11.48547 -11.39616 -11.38144 -10.96744 -10.59953 -10.26150 -9.62477 -8.76486 -7.73360 -5.06504 0.58169 1.28628 1.49968 1.53109 1.55480 1.60026 1.75342 2.12106 2.20844 2.57246 3.16969 3.22048 3.39768 3.47890 3.71267 3.90289 3.93495 4.01480 4.06866 4.21887 4.31287 4.34726 4.41462 4.53900 4.66236 4.73053 4.79232 4.82787 4.89529 4.99067 5.06391 5.07965 5.13884 5.19335 5.36675 5.56174 5.58757 5.64701 5.70556 5.73302 5.76315 5.88952 6.13486 6.27118 6.37082 6.47400 7.01849 7.09089 7.20665 7.86633 8.51508 9.36309 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.003661 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.079945 B = 7645.848638 C = 7870.997110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.082 3.918 4 N -0.575 5.575 5 C 0.486 3.514 6 O -0.572 6.572 7 C 0.128 3.872 8 H 0.178 0.822 9 C -0.151 4.151 10 C 0.524 3.476 11 O -0.533 6.533 12 N -0.670 5.670 13 C 0.726 3.274 14 O -0.592 6.592 15 N -0.690 5.690 16 C 0.134 3.866 17 H 0.099 0.901 18 C -0.145 4.145 19 C 0.190 3.810 20 N -0.607 5.607 21 C -0.216 4.216 22 H 0.078 0.922 23 C -0.049 4.049 24 N -0.945 5.945 25 Si 0.956 3.044 26 H -0.272 1.272 27 H -0.303 1.303 28 H -0.290 1.290 29 C 0.127 3.873 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.177 0.823 39 H 0.427 0.573 40 H 0.438 0.562 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.002 0.998 45 H 0.243 0.757 46 H 0.059 0.941 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -5.145 14.903 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.039 4.039 4 N -0.305 5.305 5 C 0.273 3.727 6 O -0.451 6.451 7 C 0.019 3.981 8 H 0.195 0.805 9 C -0.191 4.191 10 C 0.313 3.687 11 O -0.407 6.407 12 N -0.338 5.338 13 C 0.427 3.573 14 O -0.470 6.470 15 N -0.349 5.349 16 C 0.029 3.971 17 H 0.117 0.883 18 C -0.184 4.184 19 C 0.065 3.935 20 N -0.333 5.333 21 C -0.345 4.345 22 H 0.096 0.904 23 C -0.242 4.242 24 N -0.595 5.595 25 Si 0.787 3.213 26 H -0.198 1.198 27 H -0.230 1.230 28 H -0.217 1.217 29 C 0.001 3.999 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.154 0.846 38 H 0.194 0.806 39 H 0.268 0.732 40 H 0.280 0.720 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.314 -4.625 15.003 15.755 hybrid contribution -0.313 -0.026 -1.155 1.197 sum 1.001 -4.651 13.848 14.642 Atomic orbital electron populations 1.21602 0.94934 1.01753 1.01752 1.21872 0.96541 0.95898 1.02093 1.22334 0.77164 0.99032 1.05404 1.47860 1.07815 1.69908 1.04914 1.21600 0.88124 0.76485 0.86501 1.90718 1.15433 1.51735 1.87229 1.21363 0.93664 0.98608 0.84495 0.80494 1.22515 0.96725 0.92734 1.07110 1.21374 0.83745 0.88431 0.75126 1.90800 1.78641 1.16386 1.54849 1.44174 1.26962 1.07588 1.55120 1.15630 0.80481 0.81085 0.80127 1.91009 1.39792 1.73904 1.42262 1.44672 1.41817 1.11384 1.37011 1.22128 0.96120 0.95634 0.83233 0.88318 1.23132 0.99018 0.96789 0.99493 1.20900 0.91920 0.84888 0.95772 1.44596 1.17888 1.01936 1.68882 1.19108 0.94309 0.91506 1.29582 0.90382 1.25265 1.00720 0.95780 1.02474 1.70114 1.33111 1.03307 1.52941 0.85489 0.80236 0.76906 0.78701 1.19799 1.22968 1.21674 1.22074 0.89417 0.95025 0.93386 0.95000 0.92329 0.90739 0.92912 0.90168 0.88666 0.88565 0.84576 0.80593 0.73186 0.72022 0.90804 0.91413 0.94930 0.97998 0.94698 0.92315 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.91 71.98 0.71 -2.52 16 2 C -0.13 -2.81 5.89 30.59 0.18 -2.63 16 3 C 0.08 2.04 4.17 86.38 0.36 2.40 16 4 N -0.57 -15.20 2.53 -789.22 -1.99 -17.19 16 5 C 0.49 12.00 6.54 87.65 0.57 12.57 16 6 O -0.57 -18.70 15.57 -3.03 -0.05 -18.75 16 7 C 0.13 1.86 2.82 44.28 0.12 1.98 16 8 H 0.18 1.23 5.59 -2.39 -0.01 1.22 16 9 C -0.15 -2.02 5.26 29.90 0.16 -1.87 16 10 C 0.52 11.48 7.44 87.72 0.65 12.14 16 11 O -0.53 -15.58 17.93 -2.87 -0.05 -15.63 16 12 N -0.67 -14.59 5.18 -441.65 -2.29 -16.88 16 13 C 0.73 16.55 7.98 179.34 1.43 17.98 16 14 O -0.59 -17.43 17.97 -3.84 -0.07 -17.50 16 15 N -0.69 -11.14 4.91 -462.64 -2.27 -13.41 16 16 C 0.13 4.25 3.65 46.55 0.17 4.42 16 17 H 0.10 3.19 7.10 -2.39 -0.02 3.17 16 18 C -0.15 -5.05 6.54 31.78 0.21 -4.84 16 19 C 0.19 8.22 4.30 86.73 0.37 8.60 16 20 N -0.61 -26.02 2.19 -691.03 -1.51 -27.54 16 21 C -0.22 -10.29 10.28 84.03 0.86 -9.43 16 22 H 0.08 3.62 7.83 -2.91 -0.02 3.60 16 23 C -0.05 -2.45 5.49 84.86 0.47 -1.98 16 24 N -0.95 -50.79 10.31 21.65 0.22 -50.57 16 25 Si 0.96 41.53 29.55 68.60 2.03 43.55 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 29 C 0.13 4.49 6.06 87.02 0.53 5.01 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.52 5.60 -2.39 -0.01 1.51 16 34 H 0.08 1.18 6.45 -2.38 -0.02 1.16 16 35 H 0.10 1.66 5.03 -2.39 -0.01 1.64 16 36 H 0.10 3.37 3.74 -2.38 -0.01 3.36 16 37 H 0.14 1.91 6.30 -2.39 -0.02 1.90 16 38 H 0.18 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.43 8.85 8.86 -92.71 -0.82 8.03 16 40 H 0.44 5.25 8.90 -92.71 -0.83 4.43 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.03 1.54 5.82 -2.39 -0.01 1.53 16 44 H 0.00 0.09 7.50 -2.38 -0.02 0.07 16 45 H 0.24 13.13 8.31 -92.71 -0.77 12.36 16 46 H 0.06 1.98 5.98 -2.39 -0.01 1.96 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.83 363.80 0.22 -71.60 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.60 Total: 20.49 kcal Atomic # 6 Polarization: 35.04 SS G_CDS: 6.80 Total: 41.84 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -7.84 Total: -125.60 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.17 Total: -51.89 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -71.83 0.22 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds