Wall clock time and date at job start Tue Mar 31 2020 21:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47056 * 2 1 4 4 H 1.08999 * 109.47188 * 305.13898 * 3 2 1 5 5 C 1.52992 * 109.47207 * 65.14498 * 3 2 1 6 6 C 1.53002 * 109.47200 * 185.86985 * 5 3 2 7 7 O 1.42897 * 109.47222 * 181.46152 * 6 5 3 8 8 C 1.53008 * 109.46676 * 185.14163 * 3 2 1 9 9 N 1.46500 * 109.47112 * 65.00476 * 8 3 2 10 10 C 1.34776 * 119.99885 * 179.97438 * 9 8 3 11 11 O 1.21364 * 120.00008 * 359.97438 * 10 9 8 12 12 C 1.49345 * 120.00023 * 179.97438 * 10 9 8 13 13 O 1.21392 * 119.99739 * 359.73082 * 12 10 9 14 14 N 1.34776 * 120.00023 * 180.02562 * 12 10 9 15 15 C 1.39934 * 119.99928 * 179.72980 * 14 12 10 16 16 C 1.40452 * 125.98067 * 359.71425 * 15 14 12 17 17 C 1.35217 * 107.86810 * 179.82958 * 16 15 14 18 18 N 1.34984 * 107.87369 * 0.43077 * 17 16 15 19 19 C 1.46498 * 125.97175 * 179.70470 * 18 17 16 20 20 C 1.50703 * 109.47057 * 125.00107 * 19 18 17 21 21 H 1.07996 * 120.00049 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00110 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99757 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00002 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47027 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46825 * 119.99597 * 24 22 20 27 27 H 1.48500 * 109.47041 * 239.99826 * 24 22 20 28 28 N 1.31266 * 125.97624 * 180.02562 * 15 14 12 29 29 H 1.08997 * 109.47151 * 173.10265 * 1 2 3 30 30 H 1.08997 * 109.46514 * 293.10286 * 1 2 3 31 31 H 1.09000 * 109.47176 * 53.10316 * 1 2 3 32 32 H 1.09004 * 109.46887 * 240.00195 * 2 1 3 33 33 H 1.08996 * 109.47415 * 120.00253 * 2 1 3 34 34 H 1.09001 * 109.46682 * 305.86597 * 5 3 2 35 35 H 1.09002 * 109.47402 * 65.86632 * 5 3 2 36 36 H 1.09000 * 109.46738 * 301.45846 * 6 5 3 37 37 H 1.08997 * 109.47002 * 61.45779 * 6 5 3 38 38 H 0.96702 * 114.00292 * 179.97438 * 7 6 5 39 39 H 1.08989 * 109.47167 * 304.99845 * 8 3 2 40 40 H 1.08999 * 109.46847 * 184.99833 * 8 3 2 41 41 H 0.97003 * 120.00043 * 359.97438 * 9 8 3 42 42 H 0.97000 * 119.99546 * 359.72137 * 14 12 10 43 43 H 1.08011 * 126.07051 * 359.97438 * 16 15 14 44 44 H 1.07998 * 126.06074 * 180.15156 * 17 16 15 45 45 H 1.09000 * 109.47528 * 244.99963 * 19 18 17 46 46 H 1.08995 * 109.47229 * 5.00076 * 19 18 17 47 47 H 0.97002 * 120.00323 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 -0.8404 5 6 1.6384 2.1254 1.3088 6 6 2.0188 3.6062 1.2491 7 8 1.6747 4.2366 2.4844 8 6 3.5646 1.4444 -0.1293 9 7 3.9447 0.8990 -1.4348 10 6 5.2460 0.8037 -1.7724 11 8 6.1029 1.1702 -0.9950 12 6 5.6335 0.2472 -3.1030 13 8 4.7765 -0.1238 -3.8785 14 7 6.9348 0.1515 -3.4403 15 6 7.2980 -0.3752 -4.6849 16 6 6.4156 -0.8447 -5.6715 17 6 7.1546 -1.2661 -6.7225 18 7 8.4559 -1.0820 -6.4144 19 6 9.5979 -1.4106 -7.2711 20 6 10.4580 -0.1866 -7.4530 21 1 10.1814 0.7432 -6.9783 22 6 11.5976 -0.2535 -8.2263 23 7 11.9342 -1.3855 -8.8047 24 14 12.6634 1.2639 -8.4523 25 1 12.0705 2.4012 -7.7038 26 1 14.0293 0.9905 -7.9378 27 1 12.7372 1.6065 -9.8954 28 7 8.5234 -0.5222 -5.1321 29 1 -0.3633 -1.0202 -0.1234 30 1 -0.3632 0.4032 0.9453 31 1 -0.3633 0.6170 -0.8218 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5618 2.0324 1.4516 35 1 2.1578 1.6501 2.1410 36 1 3.0917 3.6991 1.0803 37 1 1.4796 4.0872 0.4331 38 1 1.8885 5.1791 2.5180 39 1 3.9970 0.8306 0.6608 40 1 3.9355 2.4654 -0.0402 41 1 3.2597 0.6064 -2.0562 42 1 7.6195 0.4478 -2.8205 43 1 5.3378 -0.8635 -5.6039 44 1 6.7718 -1.6811 -7.6432 45 1 10.1857 -2.2017 -6.8055 46 1 9.2378 -1.7492 -8.2425 47 1 12.7360 -1.4328 -9.3485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319563279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:44 Heat of formation + Delta-G solvation = -51.908266 kcal Electronic energy + Delta-G solvation = -28158.531832 eV Core-core repulsion = 23957.089797 eV Total energy + Delta-G solvation = -4201.442035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12981 -40.28947 -38.93589 -38.15556 -36.73514 -35.20366 -34.07118 -33.36020 -31.44532 -31.06131 -29.43752 -28.59377 -26.97004 -25.51060 -24.03977 -22.99853 -22.78408 -21.32364 -20.79890 -20.31359 -19.67990 -18.37696 -17.80041 -17.06475 -16.63757 -16.45278 -16.24632 -16.20511 -15.55476 -15.29168 -15.14347 -14.82123 -14.53094 -14.34917 -14.08406 -13.93330 -13.74068 -13.46436 -12.97942 -12.89693 -12.70828 -12.43561 -12.31995 -12.12668 -11.91704 -11.82565 -11.58314 -11.31825 -11.14213 -11.09186 -11.07119 -10.87864 -10.56214 -10.40297 -10.29456 -10.05842 -9.61126 -9.56126 -9.53614 -8.66759 -8.25312 -7.60411 -6.27483 -4.32583 1.16430 2.01503 2.63750 3.00182 3.15477 3.21136 3.28886 3.35924 3.63604 3.64226 3.83375 4.09282 4.24068 4.28624 4.36688 4.49786 4.60943 4.82850 4.88969 4.94236 4.98734 5.08018 5.11534 5.16340 5.30583 5.40536 5.41780 5.56631 5.58155 5.63210 5.68934 5.75016 5.85388 5.91337 6.07897 6.28803 6.38753 6.77052 6.84665 7.00288 7.13644 7.21868 7.32891 7.58299 7.67392 7.82900 7.92300 7.95697 8.51989 8.76343 9.33432 10.81374 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.442130 B =15612.108287 C =16574.547601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.098 4.098 4 H 0.084 0.916 5 C -0.113 4.113 6 C 0.069 3.931 7 O -0.576 6.576 8 C 0.117 3.883 9 N -0.700 5.700 10 C 0.516 3.484 11 O -0.515 6.515 12 C 0.512 3.488 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.054 3.946 18 N -0.314 5.314 19 C 0.256 3.744 20 C -0.530 4.530 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.294 5.294 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.381 0.619 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.414 0.586 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.230 5.550 17.621 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.117 4.117 4 H 0.102 0.898 5 C -0.151 4.151 6 C -0.009 4.009 7 O -0.382 6.382 8 C -0.006 4.006 9 N -0.354 5.354 10 C 0.295 3.705 11 O -0.390 6.390 12 C 0.292 3.708 13 O -0.373 6.373 14 N -0.246 5.246 15 C -0.003 4.003 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.126 5.126 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.228 0.772 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.251 0.749 42 H 0.261 0.739 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.949 4.985 17.843 28.723 hybrid contribution 0.146 1.200 -0.625 1.361 sum -21.803 6.185 17.219 28.463 Atomic orbital electron populations 1.21828 0.95347 1.02017 1.02013 1.21613 0.96409 0.95112 1.02902 1.21426 0.93936 0.97542 0.98811 0.89809 1.21524 1.02967 0.93491 0.97119 1.22326 0.98929 0.93679 0.85930 1.86453 1.86916 1.27627 1.37198 1.21676 0.94734 0.99888 0.84293 1.45716 1.07023 1.63472 1.19210 1.19895 0.83617 0.79757 0.87186 1.90801 1.49441 1.47130 1.51602 1.19913 0.82790 0.80483 0.87623 1.90710 1.49282 1.46370 1.50981 1.41996 1.07720 1.59311 1.15583 1.19010 0.92845 1.01356 0.87059 1.21510 1.01052 1.15061 0.94070 1.22583 0.84786 1.01989 1.00298 1.49171 1.06642 1.43227 1.10561 1.19809 0.80972 0.97918 0.87384 1.21290 1.08115 0.96234 1.31157 0.91193 1.24945 0.97240 0.96876 0.95003 1.69921 1.25825 1.25217 1.32303 0.86266 0.79957 0.82371 0.77887 1.19535 1.20652 1.20757 1.77411 1.17104 1.21426 0.96611 0.92472 0.92435 0.92518 0.91297 0.91330 0.90153 0.90646 0.93203 0.93539 0.77199 0.90473 0.90587 0.74893 0.73939 0.82161 0.81224 0.93523 0.92351 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.51 37.16 0.35 -0.34 16 2 C -0.12 -0.60 5.33 -26.73 -0.14 -0.74 16 3 C -0.10 -0.47 1.88 -90.62 -0.17 -0.64 16 4 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 5 C -0.11 -0.58 4.93 -26.73 -0.13 -0.72 16 6 C 0.07 0.37 6.86 37.16 0.25 0.63 16 7 O -0.58 -3.79 13.66 -35.23 -0.48 -4.27 16 8 C 0.12 0.79 4.94 -4.04 -0.02 0.77 16 9 N -0.70 -5.96 5.23 -60.76 -0.32 -6.27 16 10 C 0.52 6.17 7.89 -11.63 -0.09 6.08 16 11 O -0.51 -7.23 16.48 5.48 0.09 -7.14 16 12 C 0.51 7.30 7.85 -11.63 -0.09 7.20 16 13 O -0.50 -7.64 13.60 5.46 0.07 -7.56 16 14 N -0.60 -9.65 5.43 -11.58 -0.06 -9.71 16 15 C 0.25 4.94 8.10 -154.56 -1.25 3.69 16 16 C -0.29 -5.37 9.60 -39.82 -0.38 -5.76 16 17 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.13 3.67 -62.56 -0.23 -7.36 16 19 C 0.26 6.40 6.26 -5.19 -0.03 6.37 16 20 C -0.53 -14.59 9.24 -34.44 -0.32 -14.91 16 21 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 24 Si 0.91 21.28 29.54 -169.99 -5.02 16.25 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 N -0.29 -6.72 12.42 31.41 0.39 -6.33 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 6.79 -51.93 -0.35 -0.10 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 7.07 -51.93 -0.37 0.00 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.42 6.46 -51.93 -0.34 0.08 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.26 6.43 -51.93 -0.33 -0.08 16 37 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.38 0.93 9.12 45.56 0.42 1.35 16 39 H 0.08 0.56 8.14 -51.94 -0.42 0.14 16 40 H 0.08 0.53 6.35 -51.93 -0.33 0.20 16 41 H 0.41 3.03 7.12 -40.82 -0.29 2.74 16 42 H 0.42 6.29 8.29 -40.82 -0.34 5.95 16 43 H 0.16 2.81 5.91 -52.48 -0.31 2.50 16 44 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -33.28 394.82 -7.20 -40.48 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.01 Total: 6.24 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.32 Total: 4.06 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.52 Total: -54.01 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.32 Total: -18.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.28 -7.20 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319563279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.429 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds