Wall clock time and date at job start Tue Mar 31 2020 21:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47056 * 2 1 4 4 H 1.08999 * 109.47188 * 305.13898 * 3 2 1 5 5 C 1.52992 * 109.47207 * 65.14498 * 3 2 1 6 6 C 1.53002 * 109.47200 * 185.86985 * 5 3 2 7 7 O 1.42897 * 109.47222 * 181.46152 * 6 5 3 8 8 C 1.53008 * 109.46676 * 185.14163 * 3 2 1 9 9 N 1.46500 * 109.47112 * 65.00476 * 8 3 2 10 10 C 1.34776 * 119.99885 * 179.97438 * 9 8 3 11 11 O 1.21364 * 120.00008 * 359.97438 * 10 9 8 12 12 C 1.49345 * 120.00023 * 179.97438 * 10 9 8 13 13 O 1.21392 * 119.99739 * 359.73082 * 12 10 9 14 14 N 1.34776 * 120.00023 * 180.02562 * 12 10 9 15 15 C 1.39934 * 119.99928 * 179.72980 * 14 12 10 16 16 C 1.40452 * 125.98067 * 359.71425 * 15 14 12 17 17 C 1.35217 * 107.86810 * 179.82958 * 16 15 14 18 18 N 1.34984 * 107.87369 * 0.43077 * 17 16 15 19 19 C 1.46498 * 125.97175 * 179.70470 * 18 17 16 20 20 C 1.50703 * 109.47057 * 125.00107 * 19 18 17 21 21 H 1.07996 * 120.00049 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00110 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99757 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00002 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47027 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46825 * 119.99597 * 24 22 20 27 27 H 1.48500 * 109.47041 * 239.99826 * 24 22 20 28 28 N 1.31266 * 125.97624 * 180.02562 * 15 14 12 29 29 H 1.08997 * 109.47151 * 173.10265 * 1 2 3 30 30 H 1.08997 * 109.46514 * 293.10286 * 1 2 3 31 31 H 1.09000 * 109.47176 * 53.10316 * 1 2 3 32 32 H 1.09004 * 109.46887 * 240.00195 * 2 1 3 33 33 H 1.08996 * 109.47415 * 120.00253 * 2 1 3 34 34 H 1.09001 * 109.46682 * 305.86597 * 5 3 2 35 35 H 1.09002 * 109.47402 * 65.86632 * 5 3 2 36 36 H 1.09000 * 109.46738 * 301.45846 * 6 5 3 37 37 H 1.08997 * 109.47002 * 61.45779 * 6 5 3 38 38 H 0.96702 * 114.00292 * 179.97438 * 7 6 5 39 39 H 1.08989 * 109.47167 * 304.99845 * 8 3 2 40 40 H 1.08999 * 109.46847 * 184.99833 * 8 3 2 41 41 H 0.97003 * 120.00043 * 359.97438 * 9 8 3 42 42 H 0.97000 * 119.99546 * 359.72137 * 14 12 10 43 43 H 1.08011 * 126.07051 * 359.97438 * 16 15 14 44 44 H 1.07998 * 126.06074 * 180.15156 * 17 16 15 45 45 H 1.09000 * 109.47528 * 244.99963 * 19 18 17 46 46 H 1.08995 * 109.47229 * 5.00076 * 19 18 17 47 47 H 0.97002 * 120.00323 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 -0.8404 5 6 1.6384 2.1254 1.3088 6 6 2.0188 3.6062 1.2491 7 8 1.6747 4.2366 2.4844 8 6 3.5646 1.4444 -0.1293 9 7 3.9447 0.8990 -1.4348 10 6 5.2460 0.8037 -1.7724 11 8 6.1029 1.1702 -0.9950 12 6 5.6335 0.2472 -3.1030 13 8 4.7765 -0.1238 -3.8785 14 7 6.9348 0.1515 -3.4403 15 6 7.2980 -0.3752 -4.6849 16 6 6.4156 -0.8447 -5.6715 17 6 7.1546 -1.2661 -6.7225 18 7 8.4559 -1.0820 -6.4144 19 6 9.5979 -1.4106 -7.2711 20 6 10.4580 -0.1866 -7.4530 21 1 10.1814 0.7432 -6.9783 22 6 11.5976 -0.2535 -8.2263 23 7 11.9342 -1.3855 -8.8047 24 14 12.6634 1.2639 -8.4523 25 1 12.0705 2.4012 -7.7038 26 1 14.0293 0.9905 -7.9378 27 1 12.7372 1.6065 -9.8954 28 7 8.5234 -0.5222 -5.1321 29 1 -0.3633 -1.0202 -0.1234 30 1 -0.3632 0.4032 0.9453 31 1 -0.3633 0.6170 -0.8218 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5618 2.0324 1.4516 35 1 2.1578 1.6501 2.1410 36 1 3.0917 3.6991 1.0803 37 1 1.4796 4.0872 0.4331 38 1 1.8885 5.1791 2.5180 39 1 3.9970 0.8306 0.6608 40 1 3.9355 2.4654 -0.0402 41 1 3.2597 0.6064 -2.0562 42 1 7.6195 0.4478 -2.8205 43 1 5.3378 -0.8635 -5.6039 44 1 6.7718 -1.6811 -7.6432 45 1 10.1857 -2.2017 -6.8055 46 1 9.2378 -1.7492 -8.2425 47 1 12.7360 -1.4328 -9.3485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319563279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:43 Heat of formation + Delta-G solvation = -77.063048 kcal Electronic energy + Delta-G solvation = -28159.622625 eV Core-core repulsion = 23957.089797 eV Total energy + Delta-G solvation = -4202.532828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45012 -41.54828 -39.89685 -38.87273 -37.27488 -36.49259 -35.39376 -34.79462 -32.83654 -31.85514 -31.02003 -29.36318 -28.62682 -26.53366 -25.07806 -24.29590 -23.39753 -22.61912 -21.83507 -21.30916 -20.82727 -19.46502 -18.71517 -18.34917 -18.19365 -17.71914 -17.26987 -16.98654 -16.88861 -16.29622 -16.06900 -15.90426 -15.76558 -15.32897 -15.23250 -14.73433 -14.57959 -14.44431 -14.25404 -14.07993 -13.87180 -13.71252 -13.33666 -13.21734 -13.01791 -12.81039 -12.62555 -12.51936 -12.32831 -12.21234 -12.13988 -11.75632 -11.64795 -11.54523 -11.49278 -11.42428 -10.83668 -10.79304 -10.72761 -10.31243 -9.83489 -9.21728 -8.34355 -6.47724 0.04693 0.86424 1.14072 1.36562 1.38731 1.51201 1.74577 1.84571 2.26206 2.33727 2.59896 2.98045 3.23055 3.31693 3.62442 3.80586 3.91435 4.10158 4.21014 4.22603 4.41956 4.47742 4.52420 4.56866 4.63698 4.70410 4.72551 4.82841 4.84220 4.88671 4.95155 5.00999 5.02686 5.07796 5.17502 5.19084 5.25809 5.42072 5.50521 5.55890 5.74357 5.78816 5.85233 6.15193 6.25485 6.55877 6.63987 6.78483 6.89347 6.96696 7.22301 8.73669 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.442130 B =15612.108287 C =16574.547601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.086 4.086 4 H 0.095 0.905 5 C -0.110 4.110 6 C 0.066 3.934 7 O -0.598 6.598 8 C 0.115 3.885 9 N -0.679 5.679 10 C 0.523 3.477 11 O -0.537 6.537 12 C 0.516 3.484 13 O -0.506 6.506 14 N -0.601 5.601 15 C 0.258 3.742 16 C -0.287 4.287 17 C 0.060 3.940 18 N -0.339 5.339 19 C 0.270 3.730 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.019 3.981 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.396 0.604 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.422 0.578 42 H 0.428 0.572 43 H 0.177 0.823 44 H 0.207 0.793 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.873 6.457 17.801 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.104 4.104 4 H 0.114 0.886 5 C -0.148 4.148 6 C -0.012 4.012 7 O -0.406 6.406 8 C -0.007 4.007 9 N -0.333 5.333 10 C 0.302 3.698 11 O -0.414 6.414 12 C 0.297 3.703 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.122 5.122 19 C 0.152 3.848 20 C -0.586 4.586 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.200 1.200 27 H -0.194 1.194 28 N -0.174 5.174 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.261 0.739 42 H 0.266 0.734 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.653 5.900 18.039 30.326 hybrid contribution 0.494 0.921 -0.582 1.196 sum -23.159 6.820 17.458 29.793 Atomic orbital electron populations 1.21817 0.94901 1.02080 1.02298 1.21614 0.96788 0.94996 1.02658 1.21333 0.92283 0.97683 0.99147 0.88641 1.21492 1.02954 0.93508 0.96853 1.22398 0.99128 0.93732 0.85917 1.86408 1.87149 1.29196 1.37875 1.21848 0.96147 0.99770 0.82964 1.45703 1.05830 1.61859 1.19870 1.19439 0.84520 0.79915 0.85898 1.90806 1.50264 1.48555 1.51808 1.20370 0.81889 0.79619 0.88374 1.90687 1.49295 1.46456 1.51529 1.42128 1.08741 1.59593 1.14600 1.19334 0.92286 0.99850 0.88148 1.21756 1.01601 1.14784 0.93644 1.23256 0.83328 1.00608 1.01621 1.48906 1.07169 1.45233 1.10852 1.19395 0.81478 0.96293 0.87641 1.21429 1.09261 0.96447 1.31475 0.93021 1.25711 0.98212 0.99665 0.94530 1.69989 1.26415 1.26750 1.32617 0.85316 0.78226 0.78702 0.78268 1.20046 1.19957 1.19406 1.77322 1.19066 1.23642 0.97320 0.92602 0.92255 0.92095 0.91538 0.91616 0.89946 0.91411 0.93158 0.92460 0.75399 0.90763 0.90331 0.73920 0.73423 0.80555 0.77614 0.95923 0.91870 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.51 71.98 0.68 -0.42 16 2 C -0.12 -0.98 5.33 30.60 0.16 -0.82 16 3 C -0.09 -0.64 1.88 -10.79 -0.02 -0.66 16 4 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 5 C -0.11 -0.96 4.93 30.59 0.15 -0.81 16 6 C 0.07 0.60 6.86 71.98 0.49 1.09 16 7 O -0.60 -7.08 13.66 -148.98 -2.03 -9.11 16 8 C 0.11 1.35 4.94 86.38 0.43 1.77 16 9 N -0.68 -10.24 5.23 -464.51 -2.43 -12.67 16 10 C 0.52 11.80 7.89 87.24 0.69 12.48 16 11 O -0.54 -14.59 16.48 -3.29 -0.05 -14.65 16 12 C 0.52 14.08 7.85 87.24 0.69 14.76 16 13 O -0.51 -14.53 13.60 -3.38 -0.05 -14.57 16 14 N -0.60 -19.16 5.43 -308.89 -1.68 -20.84 16 15 C 0.26 10.13 8.10 133.40 1.08 11.21 16 16 C -0.29 -10.44 9.60 22.11 0.21 -10.22 16 17 C 0.06 2.24 11.43 83.51 0.95 3.20 16 18 N -0.34 -15.58 3.67 -351.86 -1.29 -16.87 16 19 C 0.27 13.81 6.26 85.63 0.54 14.34 16 20 C -0.55 -30.75 9.24 25.60 0.24 -30.51 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.06 5.46 84.66 0.46 1.53 16 23 N -0.92 -51.66 13.29 21.45 0.28 -51.38 16 24 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 N -0.34 -15.91 12.42 -54.54 -0.68 -16.59 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.41 6.79 -2.39 -0.02 0.39 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.57 7.07 -2.38 -0.02 0.55 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.71 6.46 -2.39 -0.02 0.70 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.44 6.43 -2.39 -0.02 0.43 16 37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.40 1.46 9.12 -74.06 -0.68 0.78 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.95 6.35 -2.39 -0.02 0.94 16 41 H 0.42 5.18 7.12 -92.71 -0.66 4.52 16 42 H 0.43 12.75 8.29 -92.71 -0.77 11.98 16 43 H 0.18 5.81 5.91 -2.90 -0.02 5.79 16 44 H 0.21 5.82 8.06 -2.91 -0.02 5.80 16 45 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 3.11 8.07 -2.39 -0.02 3.09 16 47 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.09 394.82 -0.22 -71.30 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -1.07 Total: 22.78 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.75 Total: 16.94 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -5.79 Total: -118.36 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.14 Total: -38.33 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.09 -0.22 -71.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319563279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.760 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds