Wall clock time and date at job start Tue Mar 31 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 C 1.53009 * 109.47333 * 175.00082 * 5 3 2 7 7 O 1.42902 * 109.47053 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 9 9 C 1.34776 * 120.00080 * 275.00208 * 8 3 2 10 10 O 1.21357 * 120.00188 * 359.97438 * 9 8 3 11 11 C 1.49346 * 120.00063 * 179.97438 * 9 8 3 12 12 O 1.21386 * 119.99945 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00063 * 180.02562 * 11 9 8 14 14 C 1.39932 * 119.99624 * 179.97438 * 13 11 9 15 15 C 1.40458 * 125.98392 * 359.71773 * 14 13 11 16 16 C 1.35219 * 107.86601 * 179.82619 * 15 14 13 17 17 C 1.50698 * 126.06251 * 180.17973 * 16 15 14 18 18 N 1.34990 * 107.87586 * 0.43109 * 16 15 14 19 19 C 1.46493 * 125.97227 * 179.72761 * 18 16 15 20 20 C 1.50702 * 109.47061 * 269.97631 * 19 18 16 21 21 H 1.07995 * 119.99813 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99656 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00017 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47372 * 89.99806 * 24 22 20 26 26 H 1.48500 * 109.46934 * 210.00135 * 24 22 20 27 27 H 1.48503 * 109.47186 * 329.99290 * 24 22 20 28 28 N 1.31273 * 125.97484 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47310 * 295.00266 * 5 3 2 35 35 H 1.09002 * 109.47223 * 55.00225 * 5 3 2 36 36 H 1.09001 * 109.47073 * 300.00330 * 6 5 3 37 37 H 1.08993 * 109.46778 * 60.00094 * 6 5 3 38 38 H 0.96703 * 113.99478 * 180.02562 * 7 6 5 39 39 H 0.97001 * 119.99703 * 95.00546 * 8 3 2 40 40 H 0.96996 * 120.00057 * 359.97438 * 13 11 9 41 41 H 1.07994 * 126.06587 * 359.96500 * 15 14 13 42 42 H 1.08997 * 109.47206 * 270.29706 * 17 16 15 43 43 H 1.09002 * 109.47224 * 30.29029 * 17 16 15 44 44 H 1.08997 * 109.47266 * 150.29573 * 17 16 15 45 45 H 1.09006 * 109.46991 * 29.97004 * 19 18 16 46 46 H 1.09001 * 109.47278 * 149.97268 * 19 18 16 47 47 H 0.97001 * 119.99403 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 6 4.0646 2.8849 -0.2511 7 8 5.4887 2.8865 -0.3690 8 7 1.6525 2.0974 1.2518 9 6 0.4352 2.6643 1.3670 10 8 -0.3397 2.6327 0.4335 11 6 0.0399 3.3315 2.6433 12 8 0.8151 3.3636 3.5768 13 7 -1.1776 3.8980 2.7586 14 6 -1.5481 4.5227 3.9547 15 6 -0.7569 4.6275 5.1105 16 6 -1.4692 5.3021 6.0411 17 6 -1.0073 5.6476 7.4333 18 7 -2.6696 5.6063 5.5037 19 6 -3.7532 6.3306 6.1726 20 6 -4.6512 5.3492 6.8808 21 1 -4.4365 4.2918 6.8366 22 6 -5.7469 5.8015 7.5851 23 7 -6.5309 4.9450 8.2027 24 14 -6.1186 7.6305 7.6608 25 1 -7.0040 8.0031 6.5285 26 1 -6.7968 7.9451 8.9439 27 1 -4.8502 8.3976 7.5705 28 7 -2.6981 5.1083 4.1948 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 4.0030 0.9834 0.7597 35 1 3.8571 0.8799 -1.0113 36 1 3.6265 3.3457 -1.1364 37 1 3.7724 3.4492 0.6345 38 1 5.8755 3.7690 -0.4521 39 1 2.2720 2.1231 1.9978 40 1 -1.7969 3.8727 2.0126 41 1 0.2437 4.2403 5.2333 42 1 -1.2766 4.8417 8.1159 43 1 0.0748 5.7788 7.4350 44 1 -1.4859 6.5722 7.7559 45 1 -3.3314 7.0262 6.8983 46 1 -4.3315 6.8838 5.4326 47 1 -7.3015 5.2632 8.6984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319672200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:03 Heat of formation + Delta-G solvation = -44.467657 kcal Electronic energy + Delta-G solvation = -29046.529042 eV Core-core repulsion = 24845.409656 eV Total energy + Delta-G solvation = -4201.119386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27540 -40.52567 -38.96362 -37.71922 -36.39933 -35.13892 -33.37036 -32.68917 -31.65451 -31.42822 -31.20934 -27.58571 -26.55599 -26.45216 -25.03749 -22.61507 -22.29812 -21.58284 -20.97804 -19.96738 -19.70305 -18.17151 -17.63966 -17.25618 -17.16730 -16.45333 -16.25791 -15.84875 -15.33167 -15.27827 -15.11766 -14.59628 -14.43010 -14.15495 -13.91140 -13.86673 -13.42180 -13.28477 -12.97834 -12.66304 -12.50390 -12.40077 -12.32776 -12.10613 -11.89116 -11.69598 -11.60477 -11.52923 -11.43136 -11.27279 -11.10511 -10.82768 -10.66973 -10.44312 -10.07527 -10.04893 -9.66046 -9.63606 -9.50851 -8.81684 -8.13179 -7.64010 -6.29635 -4.33274 1.13453 1.97163 2.53740 2.94355 3.05829 3.13549 3.18584 3.22711 3.56626 3.57753 3.73386 4.18169 4.28596 4.40453 4.45837 4.62061 4.80229 4.87190 4.98334 4.99755 5.13006 5.21544 5.25224 5.42688 5.48292 5.51458 5.60964 5.70833 5.72142 5.78606 5.96607 5.97930 6.01178 6.16020 6.22369 6.29218 6.38266 6.50387 6.59420 6.84692 7.14557 7.18939 7.23760 7.30818 7.58034 7.74691 7.87656 8.26157 8.42877 8.75197 9.24998 10.82770 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.002150 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.484705 B =13021.841821 C =13697.356145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.146 3.854 4 H 0.097 0.903 5 C -0.128 4.128 6 C 0.072 3.928 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.517 3.483 10 O -0.509 6.509 11 C 0.511 3.489 12 O -0.498 6.498 13 N -0.599 5.599 14 C 0.261 3.739 15 C -0.286 4.286 16 C 0.097 3.903 17 C -0.086 4.086 18 N -0.312 5.312 19 C 0.231 3.769 20 C -0.542 4.542 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.885 5.885 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.308 5.308 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.382 0.618 39 H 0.414 0.586 40 H 0.423 0.577 41 H 0.162 0.838 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.215 -4.344 -15.206 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.042 3.958 4 H 0.115 0.885 5 C -0.166 4.166 6 C -0.005 4.005 7 O -0.382 6.382 8 N -0.351 5.351 9 C 0.297 3.703 10 O -0.383 6.383 11 C 0.290 3.710 12 O -0.371 6.371 13 N -0.247 5.247 14 C 0.009 3.991 15 C -0.316 4.316 16 C -0.034 4.034 17 C -0.144 4.144 18 N -0.094 5.094 19 C 0.112 3.888 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.700 3.300 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.138 5.138 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.229 0.771 39 H 0.250 0.750 40 H 0.261 0.739 41 H 0.180 0.820 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.710 -4.652 -15.492 25.497 hybrid contribution 0.207 1.217 0.366 1.288 sum 19.917 -3.434 -15.126 25.244 Atomic orbital electron populations 1.21834 0.94489 1.01211 1.03087 1.21963 0.97372 0.95067 1.02842 1.21153 0.93735 0.94139 0.86784 0.88534 1.21822 0.93330 0.96861 1.04596 1.22201 0.81065 0.97090 1.00180 1.86443 1.20428 1.34344 1.96937 1.45844 1.15930 1.55893 1.17459 1.19820 0.82932 0.79648 0.87863 1.90804 1.50556 1.57442 1.39541 1.19988 0.82159 0.80256 0.88547 1.90719 1.50627 1.56543 1.39176 1.42004 1.16000 1.52578 1.14136 1.18881 0.93855 0.99248 0.87156 1.21244 1.04007 1.14136 0.92252 1.21080 0.86812 0.98715 0.96779 1.20370 1.00978 1.02822 0.90221 1.48598 1.11953 1.41373 1.07516 1.20056 0.84185 0.92357 0.92252 1.21150 1.09724 0.95079 1.32085 0.90075 1.24809 0.95246 0.97963 0.94501 1.69872 1.15526 1.34365 1.32406 0.86885 0.79430 0.85244 0.78413 1.19594 1.20506 1.18896 1.77337 1.18006 1.20359 0.98142 0.91901 0.92594 0.93081 0.91346 0.90589 0.90146 0.89168 0.93419 0.93210 0.77073 0.74965 0.73948 0.82020 0.89928 0.90552 0.90991 0.93054 0.93515 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.51 37.16 0.32 -1.03 16 2 C -0.13 -0.90 5.61 -26.74 -0.15 -1.05 16 3 C 0.15 0.98 2.26 -67.93 -0.15 0.83 16 4 H 0.10 0.73 7.58 -51.93 -0.39 0.33 16 5 C -0.13 -0.72 5.12 -26.73 -0.14 -0.85 16 6 C 0.07 0.44 6.93 37.16 0.26 0.70 16 7 O -0.58 -3.95 13.66 -35.23 -0.48 -4.43 16 8 N -0.70 -5.76 4.48 -54.28 -0.24 -6.00 16 9 C 0.52 5.83 6.45 -11.63 -0.08 5.75 16 10 O -0.51 -6.45 13.61 5.49 0.07 -6.37 16 11 C 0.51 7.10 7.85 -11.63 -0.09 7.01 16 12 O -0.50 -7.58 13.60 5.47 0.07 -7.50 16 13 N -0.60 -9.40 5.43 -11.58 -0.06 -9.47 16 14 C 0.26 5.12 8.10 -154.55 -1.25 3.87 16 15 C -0.29 -5.49 9.51 -39.82 -0.38 -5.86 16 16 C 0.10 1.92 6.92 -82.28 -0.57 1.35 16 17 C -0.09 -1.35 10.11 36.00 0.36 -0.98 16 18 N -0.31 -7.05 3.59 -58.33 -0.21 -7.26 16 19 C 0.23 5.42 5.06 -5.20 -0.03 5.40 16 20 C -0.54 -14.96 9.94 -34.44 -0.34 -15.30 16 21 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 24 Si 0.87 19.88 27.47 -169.99 -4.67 15.22 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 28 N -0.31 -6.89 12.60 31.41 0.40 -6.49 16 29 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 30 H 0.06 0.62 5.65 -51.93 -0.29 0.32 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.05 0.31 7.75 -51.93 -0.40 -0.09 16 38 H 0.38 1.09 9.12 45.56 0.42 1.51 16 39 H 0.41 3.07 8.07 -40.82 -0.33 2.74 16 40 H 0.42 6.01 8.29 -40.82 -0.34 5.67 16 41 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.10 7.07 -51.93 -0.37 0.74 16 45 H 0.05 1.12 6.09 -51.93 -0.32 0.80 16 46 H 0.05 1.10 7.57 -51.93 -0.39 0.70 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -33.75 389.46 -6.92 -40.67 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.11 Total: 9.12 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.34 Total: 1.91 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.65 Total: -54.48 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.33 Total: -18.30 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.75 -6.92 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319672200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.795 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds