Wall clock time and date at job start Tue Mar 31 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 C 1.53009 * 109.47333 * 175.00082 * 5 3 2 7 7 O 1.42902 * 109.47053 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 9 9 C 1.34776 * 120.00080 * 275.00208 * 8 3 2 10 10 O 1.21357 * 120.00188 * 359.97438 * 9 8 3 11 11 C 1.49346 * 120.00063 * 179.97438 * 9 8 3 12 12 O 1.21386 * 119.99945 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00063 * 180.02562 * 11 9 8 14 14 C 1.39932 * 119.99624 * 179.97438 * 13 11 9 15 15 C 1.40458 * 125.98392 * 359.71773 * 14 13 11 16 16 C 1.35219 * 107.86601 * 179.82619 * 15 14 13 17 17 C 1.50698 * 126.06251 * 180.17973 * 16 15 14 18 18 N 1.34990 * 107.87586 * 0.43109 * 16 15 14 19 19 C 1.46493 * 125.97227 * 179.72761 * 18 16 15 20 20 C 1.50702 * 109.47061 * 269.97631 * 19 18 16 21 21 H 1.07995 * 119.99813 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99656 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00017 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47372 * 89.99806 * 24 22 20 26 26 H 1.48500 * 109.46934 * 210.00135 * 24 22 20 27 27 H 1.48503 * 109.47186 * 329.99290 * 24 22 20 28 28 N 1.31273 * 125.97484 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47310 * 295.00266 * 5 3 2 35 35 H 1.09002 * 109.47223 * 55.00225 * 5 3 2 36 36 H 1.09001 * 109.47073 * 300.00330 * 6 5 3 37 37 H 1.08993 * 109.46778 * 60.00094 * 6 5 3 38 38 H 0.96703 * 113.99478 * 180.02562 * 7 6 5 39 39 H 0.97001 * 119.99703 * 95.00546 * 8 3 2 40 40 H 0.96996 * 120.00057 * 359.97438 * 13 11 9 41 41 H 1.07994 * 126.06587 * 359.96500 * 15 14 13 42 42 H 1.08997 * 109.47206 * 270.29706 * 17 16 15 43 43 H 1.09002 * 109.47224 * 30.29029 * 17 16 15 44 44 H 1.08997 * 109.47266 * 150.29573 * 17 16 15 45 45 H 1.09006 * 109.46991 * 29.97004 * 19 18 16 46 46 H 1.09001 * 109.47278 * 149.97268 * 19 18 16 47 47 H 0.97001 * 119.99403 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 6 4.0646 2.8849 -0.2511 7 8 5.4887 2.8865 -0.3690 8 7 1.6525 2.0974 1.2518 9 6 0.4352 2.6643 1.3670 10 8 -0.3397 2.6327 0.4335 11 6 0.0399 3.3315 2.6433 12 8 0.8151 3.3636 3.5768 13 7 -1.1776 3.8980 2.7586 14 6 -1.5481 4.5227 3.9547 15 6 -0.7569 4.6275 5.1105 16 6 -1.4692 5.3021 6.0411 17 6 -1.0073 5.6476 7.4333 18 7 -2.6696 5.6063 5.5037 19 6 -3.7532 6.3306 6.1726 20 6 -4.6512 5.3492 6.8808 21 1 -4.4365 4.2918 6.8366 22 6 -5.7469 5.8015 7.5851 23 7 -6.5309 4.9450 8.2027 24 14 -6.1186 7.6305 7.6608 25 1 -7.0040 8.0031 6.5285 26 1 -6.7968 7.9451 8.9439 27 1 -4.8502 8.3976 7.5705 28 7 -2.6981 5.1083 4.1948 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 4.0030 0.9834 0.7597 35 1 3.8571 0.8799 -1.0113 36 1 3.6265 3.3457 -1.1364 37 1 3.7724 3.4492 0.6345 38 1 5.8755 3.7690 -0.4521 39 1 2.2720 2.1231 1.9978 40 1 -1.7969 3.8727 2.0126 41 1 0.2437 4.2403 5.2333 42 1 -1.2766 4.8417 8.1159 43 1 0.0748 5.7788 7.4350 44 1 -1.4859 6.5722 7.7559 45 1 -3.3314 7.0262 6.8983 46 1 -4.3315 6.8838 5.4326 47 1 -7.3015 5.2632 8.6984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319672200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:03 Heat of formation + Delta-G solvation = -71.359586 kcal Electronic energy + Delta-G solvation = -29047.695164 eV Core-core repulsion = 24845.409656 eV Total energy + Delta-G solvation = -4202.285507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.56840 -41.73698 -40.03964 -38.36481 -37.09444 -36.46836 -35.27266 -33.46221 -33.26177 -32.84825 -31.99229 -29.29982 -27.94999 -27.33501 -26.08432 -24.36001 -22.84114 -22.66419 -21.73702 -21.39526 -20.97839 -19.25302 -19.24126 -18.36321 -18.14384 -17.63899 -17.34886 -17.06195 -16.70264 -16.38753 -16.01456 -15.87759 -15.48657 -15.32378 -14.97643 -14.85744 -14.58211 -14.48656 -14.14129 -13.91423 -13.80142 -13.65504 -13.55867 -13.28394 -13.04797 -12.84927 -12.64055 -12.57355 -12.43511 -12.30317 -12.12121 -11.99125 -11.83470 -11.75120 -11.60970 -11.54331 -10.90946 -10.90241 -10.76458 -10.26284 -9.69261 -9.22684 -8.40950 -6.52321 0.04153 0.82591 1.04087 1.35069 1.37756 1.46763 1.69752 1.78286 2.22939 2.26202 2.54203 2.91684 3.12680 3.24601 3.76209 3.87848 3.97691 4.04575 4.13290 4.25697 4.34147 4.35956 4.49438 4.51067 4.57591 4.62606 4.70036 4.74933 4.80902 4.87807 4.88833 4.92056 5.03533 5.05847 5.11554 5.14475 5.16027 5.22253 5.33143 5.45323 5.73135 5.81691 5.95520 6.15511 6.32661 6.51071 6.55363 6.80059 6.86048 6.88129 7.11412 8.75625 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.002150 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.484705 B =13021.841821 C =13697.356145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.148 3.852 4 H 0.092 0.908 5 C -0.121 4.121 6 C 0.070 3.930 7 O -0.593 6.593 8 N -0.679 5.679 9 C 0.526 3.474 10 O -0.523 6.523 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.601 5.601 14 C 0.268 3.732 15 C -0.292 4.292 16 C 0.093 3.907 17 C -0.085 4.085 18 N -0.338 5.338 19 C 0.240 3.760 20 C -0.551 4.551 21 H 0.024 0.976 22 C 0.021 3.979 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.232 1.232 28 N -0.351 5.351 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.397 0.603 39 H 0.420 0.580 40 H 0.429 0.571 41 H 0.176 0.824 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.536 -3.191 -15.881 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.045 3.955 4 H 0.110 0.890 5 C -0.158 4.158 6 C -0.008 4.008 7 O -0.401 6.401 8 N -0.333 5.333 9 C 0.305 3.695 10 O -0.400 6.400 11 C 0.294 3.706 12 O -0.381 6.381 13 N -0.250 5.250 14 C 0.014 3.986 15 C -0.323 4.323 16 C -0.037 4.037 17 C -0.143 4.143 18 N -0.121 5.121 19 C 0.120 3.880 20 C -0.589 4.589 21 H 0.042 0.958 22 C -0.179 4.179 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.154 1.154 28 N -0.181 5.181 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.247 0.753 39 H 0.258 0.742 40 H 0.267 0.733 41 H 0.193 0.807 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.105 -3.518 -16.189 27.624 hybrid contribution -0.398 0.677 0.510 0.936 sum 21.707 -2.841 -15.680 26.928 Atomic orbital electron populations 1.21815 0.96315 1.01040 1.01480 1.21962 0.95561 0.95098 1.04223 1.21266 0.94699 0.93964 0.85535 0.88970 1.21763 0.91917 0.96884 1.05284 1.22229 0.80941 0.97318 1.00266 1.86397 1.20743 1.36036 1.96953 1.45854 1.14647 1.54504 1.18324 1.19302 0.83777 0.79941 0.86444 1.90812 1.51242 1.58361 1.39547 1.20542 0.81206 0.79384 0.89429 1.90692 1.50740 1.56708 1.39939 1.42136 1.16936 1.52744 1.13220 1.19205 0.93085 0.97906 0.88406 1.21483 1.04501 1.14235 0.92055 1.21822 0.85798 0.97705 0.98372 1.20539 1.03300 1.02817 0.87630 1.48509 1.12633 1.42913 1.08025 1.19839 0.84218 0.91594 0.92373 1.21234 1.11252 0.93341 1.33055 0.95792 1.25844 0.94543 1.03980 0.93536 1.70036 1.16431 1.37390 1.33654 0.85674 0.80558 0.78054 0.78492 1.19228 1.19946 1.15441 1.77242 1.19722 1.22329 0.98821 0.92791 0.94869 0.92576 0.90751 0.88414 0.89792 0.88050 0.92997 0.93527 0.75283 0.74225 0.73306 0.80704 0.90258 0.86959 0.90351 0.90413 0.93352 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.51 71.98 0.61 -1.96 16 2 C -0.13 -1.48 5.61 30.59 0.17 -1.31 16 3 C 0.15 1.71 2.26 44.99 0.10 1.81 16 4 H 0.09 1.23 7.58 -2.39 -0.02 1.21 16 5 C -0.12 -1.05 5.12 30.60 0.16 -0.90 16 6 C 0.07 0.71 6.93 71.99 0.50 1.21 16 7 O -0.59 -6.97 13.66 -148.98 -2.04 -9.01 16 8 N -0.68 -10.22 4.48 -443.99 -1.99 -12.21 16 9 C 0.53 11.45 6.45 87.24 0.56 12.01 16 10 O -0.52 -13.05 13.61 -3.27 -0.04 -13.10 16 11 C 0.51 14.01 7.85 87.24 0.69 14.69 16 12 O -0.51 -14.94 13.60 -3.36 -0.05 -14.98 16 13 N -0.60 -18.99 5.43 -308.89 -1.68 -20.67 16 14 C 0.27 10.60 8.10 133.40 1.08 11.68 16 15 C -0.29 -11.09 9.51 22.11 0.21 -10.88 16 16 C 0.09 3.64 6.92 41.38 0.29 3.93 16 17 C -0.08 -2.53 10.11 71.24 0.72 -1.81 16 18 N -0.34 -15.41 3.59 -338.45 -1.22 -16.63 16 19 C 0.24 11.21 5.06 85.63 0.43 11.65 16 20 C -0.55 -31.33 9.94 25.60 0.25 -31.08 16 21 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 22 C 0.02 1.16 5.47 84.66 0.46 1.62 16 23 N -0.94 -56.81 13.96 21.45 0.30 -56.51 16 24 Si 0.95 40.42 27.47 68.60 1.88 42.31 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.23 -8.57 6.54 99.48 0.65 -7.92 16 28 N -0.35 -16.03 12.60 -54.54 -0.69 -16.72 16 29 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 30 H 0.03 0.71 5.65 -2.39 -0.01 0.70 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.49 7.75 -2.39 -0.02 0.47 16 38 H 0.40 1.58 9.12 -74.05 -0.68 0.91 16 39 H 0.42 5.48 8.07 -92.71 -0.75 4.73 16 40 H 0.43 12.42 8.29 -92.71 -0.77 11.65 16 41 H 0.18 6.09 5.91 -2.91 -0.02 6.07 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.23 7.07 -2.39 -0.02 2.21 16 45 H 0.08 3.21 6.09 -2.38 -0.01 3.19 16 46 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.89 389.46 -0.48 -76.37 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -1.21 Total: 30.46 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 6.24 Total: 10.68 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -5.27 Total: -122.74 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.13 Total: -37.09 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.88 Total: 42.31 kcal Total: -75.89 -0.48 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319672200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds